LOCUS       NZ_KP979589             6754 bp    DNA     circular CON 09-JUL-2023
DEFINITION  Shigella sonnei strain IDH01157 plasmid pSSE, complete sequence.
ACCESSION   NZ_KP979589
VERSION     NZ_KP979589.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14226596
KEYWORDS    RefSeq.
SOURCE      Shigella sonnei
  ORGANISM  Shigella sonnei
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6754)
  AUTHORS   Calcuttawala,F., Pazhani,G.P., Hariharan,C., Saha,D.R. and
            Ramamurthy,T.
  TITLE     Characterization of plasmid-borne E-type colicins from the clinical
            strains of Shigella sonnei
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6754)
  AUTHORS   Calcuttawala,F., Pazhani,G.P., Hariharan,C., Saha,D.R. and
            Ramamurthy,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAR-2015) Bacteriology, National Institute of Cholera
            and Enteric Diseases, P-33 CIT Road, Scheme-XM, Kolkata, West Bengal
            700010, India
COMMENT     ##Assembly-Data-START##
            Sequencing Technology        :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI RefSeq
            Annotation Date              :: 07/09/2023 03:23:12
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision :: 6.5
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                :: 6
            CDSs (total)                 :: 6
            Genes (coding)               :: 6
            CDSs (with protein)          :: 6
            Genes (RNA)                  :: 0
            tRNAs                        :: 0
            ncRNAs                       :: 0
            Pseudo Genes (total)         :: 0
            CDSs (without protein)       :: 0
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            KP979589.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..6754
                     /organism="Shigella sonnei"
                     /mol_type="genomic DNA"
                     /strain="IDH01157"
                     /isolation_source="Stool"
                     /db_xref="taxon:624"
                     /plasmid="pSSE"
                     /geo_loc_name="India"
     gene            361..1254
                     /locus_tag="HPF15_RS00005"
     CDS             361..1254
                     /locus_tag="HPF15_RS00005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016237866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_001277133.1"
                     /translation="MSAVLQRFREKLPHKPYCTNDFAYGVRILPKNIAILARFIQQNQP
                     HALYWLPFDVDRTGASIDWSDRNCPAPNITVKNPRNGHAHLLYALALPVRTAPDASASA
                     LRYAAAIERALCEKLGADVNYSGLICKNPCHPEWQEVEWREEPYTLDELADYLDLSASA
                     RRSVDKNYGLGRNYHLFEKVRKWAYRAIRQGWPVFSQWLDAVIQRVEMYNASLPVPLSP
                     AECRAIGKSIAKYTHRKFSPEGFSAVQAARGRKGGTKSKRAAVPTSARSLKPWEALGIS
                     RATYYRKLKCDPDLAK"
                     /name="replication initiation protein"
     gene            complement(1470..1745)
                     /locus_tag="HPF15_RS00010"
     CDS             complement(1470..1745)
                     /locus_tag="HPF15_RS00010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000091757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mobilization protein"
                     /protein_id="WP_171264635.1"
                     /translation="MSRTLEQKIAEAEARLQRLKAKSRSLDTAQKVIVGAAMLARVRRP
                     EEAQLRAFLLQFLRKDVTRQADVNRLQPLINELEKLPRPPAKPQNH"
                     /name="mobilization protein"
     gene            1924..4143
                     /gene="mobQ"
                     /locus_tag="HPF15_RS00015"
     CDS             1924..4143
                     /gene="mobQ"
                     /locus_tag="HPF15_RS00015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001029330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobQ family relaxase"
                     /protein_id="WP_052986705.1"
                     /translation="MAIYHLSMKIISRKNGYSAVASAAYRSGSVIPDDRTGLIHDYTRK
                     RGVDDAVILTPANAPSWCGDRSVLWNAVEKAEQRRNSQLAREIELAIPREISREAARET
                     VLAFVRENFVSRGMIADVAFHHMDRTNPHAHIMLTTRAVGETGFAGKVRDWNDRALAET
                     WRASWADHANRALANAGYQEEIDHRSYERQGLEKAPGLHLGKAACAMEKRGMETERGEQ
                     NRLINSLNLEIQVSRTQLALRTVQEAQRKRELSDAARRAAEALNLTIPAANASADTLRE
                     FIATLPQECGNAWEMTPEFLAMSGKVNDIEREGNALLKEQAILEKEMTGLKKARPVASL
                     LSEIPLMTWAEPEYRKRQLRFWKLGKQIESLRRTYRAVKERDIPARRQAFETQWNTWIA
                     PGMAELKEKLSAREAERRREEAEAEARRKEQEHEARLKRHDNHRLSRETALVGVITELG
                     RAREPGTGRITRYMMLSNRAGEFTVWGDELAHYPQSVHDPVNVYLSPGGAVMVSDIREG
                     MPESHETMVRPERVRMYSGATVRHVLEQMRQGWPSYGFPALPHHWPDNFYFSDDRRPVA
                     SPLPSAHRVDITADAVPEQLMPVVFSREGNSRTLNLLLCKGPEEMLVGFVRREGGFCPV
                     LVLPSPDYSHLIVSTITENGVCLAGYGEAINHDEDTPYPPEPHLMQFRLKGHHDRLLAA
                     VHKPEEMPDYLFRQLGFNQTWHEWKRDEQHRQQQRRPGHFRGMSM"
                     /name="mobQ"
     gene            4376..6121
                     /gene="col"
                     /locus_tag="HPF15_RS00020"
     CDS             4376..6121
                     /gene="col"
                     /locus_tag="HPF15_RS00020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_172690082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colicin-E2"
                     /protein_id="WP_052986704.1"
                     /translation="MSGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNP
                     WGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA
                     VSISAGALSAAIADMMAALKGPFKFGLWGVALYGVLPSQIAKDDPNMMSKIVTSLPADD
                     ITESPVSSLPLDKATVNVNVRVVDDVKDERQNISVVSGVPMSVPVVDAKPTERPGVFTA
                     SIPGAPVLNISVNNSTPAVQTLSPGVTNNTDKDVRPAGFTQGGNTRDAVIRFPKDSGHN
                     AVYVSVSDVLSPDQVKQRQDEENRRQQEWDATHPVEAAERNYERARAELNQANEDVARN
                     QERQAKAVQVYNSRKSELDAANKTLADAIAEIKQFDRFAHDPMSGGHRMWQMAGLKAQR
                     AQTDVNNKQAAFDAAAKEKSDADAALSAAQERRKQKENKEKDAKDKLDKESKRNKPGKA
                     TGKGKPVGDKWLDDAGKDSGAPIPDRIADKLRDKEFKNFDDFRRKFWEEVSKDPELSKQ
                     FNPGNKKRLSQGLAPRARNKDTVGGRRSFELHHDKPISQDGGVYDMDNLRITTPKRHID
                     IHRGQ"
                     /name="col"
     gene            6124..6381
                     /locus_tag="HPF15_RS00025"
     CDS             6124..6381
                     /locus_tag="HPF15_RS00025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000421100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriocin immunity protein"
                     /protein_id="WP_171264636.1"
                     /translation="MELKNSISDYTETEFKKIIEDIINCEGDEKKQDDNLEHFISVTEH
                     PSGSDLIYYPEGNNDGSPEAVIKEIKEWRTANGKSGFKQG"
                     /name="bacteriocin immunity protein"
     gene            6443..6586
                     /locus_tag="HPF15_RS00030"
     CDS             6443..6586
                     /locus_tag="HPF15_RS00030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000724569.1"
                     /GO_component="GO:0019867 - outer membrane [Evidence IEA]"
                     /GO_process="GO:0019835 - cytolysis [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colicin release lysis protein"
                     /protein_id="WP_001314446.1"
                     /translation="MKKITGIILLLLAVIILAACQANYIRDVQGGTVSPSSTAEVTGLA
                     TQ"
                     /name="colicin release lysis protein"
     BGC             1..6754
                     /name="RiPP-like"
                     /gene="RiPP-like"
                     /tool="antismash"
     Typing          complement(1750..1923)
                     /name="MOBQ"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.5600000000000002e-86"
     Typing          complement(1924..2282)
                     /name="MOBQ"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="99.167"
                     /coverage="100.0"
                     /evalue="0.0"
     Typing          362..1254
                     /name="rep_cluster_2150"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="91.051"
                     /coverage="100.0"
                     /evalue="0.0"
     Typing          1925..4140
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="99.865"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 gcacgaaacc gatcgtgcat cgctttcgtg catagttatg caacgcgcta aaaacgattc
       61 tgacgcattt tttatgttta ccctggtgtt tccttgtctt tttgtttttt ttgcgtcaga
      121 aagcgattga gggtgtttta aggggtacgt acaacgggag ttatggtaaa tggatcggtt
      181 tttcgggaag gatcgacagg atttgccgtt gggtgtagtg taagcgactg aaaaacaaac
      241 gccccgtaaa tcgtgctctc accgccaaga ttgatcacga aattacaggg cgccgggttc
      301 cgcgtttccc gatgggaaag cgcggttagt taaactgtgt accgagagaa atcgtatcac
      361 atgagcgccg tacttcaacg cttcagggaa aaattaccgc acaaaccgta ctgtacgaac
      421 gatttcgcgt acggcgttcg cattctgccg aaaaacattg ccattcttgc ccgtttcatc
      481 cagcagaacc agccacatgc actgtactgg cttccctttg acgtggaccg gacaggggca
      541 tcaatcgact ggagcgaccg gaattgtccg gcccctaaca tcaccgtaaa aaatccccgt
      601 aacgggcacg cgcatctgct ctacgcgctc gcccttcctg tgagaactgc gccggatgca
      661 tcggcttcgg cgctcagata cgctgccgct attgagcgtg cgttgtgtga aaaactgggc
      721 gcggatgtga attacagcgg cctgatctgc aaaaatccgt gccaccctga atggcaggaa
      781 gtggaatggc gcgaggaacc ctacactctc gacgaactgg ctgattatct cgatttgagc
      841 gcctcagcgc gccgtagcgt cgataaaaat tacgggctgg ggcgaaacta ccatctgttc
      901 gaaaaggtcc gtaaatgggc ctacagagcg attcgtcagg gctggcctgt attctcacaa
      961 tggcttgatg ccgtgatcca gcgtgtcgaa atgtacaacg catcgcttcc cgttccgctt
     1021 tctccggctg aatgtcgggc tattggcaag agcattgcga aatatacaca caggaaattc
     1081 tcaccagagg gattttccgc tgtacaggcc gctcgaggtc gcaagggtgg aactaaatct
     1141 aagcgcgcag cagttcctac atcagcacgt tcgctgaagc cgtgggaggc attagggatc
     1201 agtcgagcga cgtactaccg aaaattaaaa tgtgatccag atctcgcaaa atgagaccag
     1261 ataagcctta tcagataaca gcgccctttt ggcgtctttt tgagcagtga tctttcttgc
     1321 gatttcctcc gttctgcccc gtaatggcgt ggctttccgc atgattgagg tggtagcgct
     1381 cgccgcagtc tcatgaccga gcgtagcgag cgaatgagcg aggaagcgca aaggcgcccg
     1441 gtggtgcatg ggcacttacg cgccggggct tagtggttct gcggtttcgc cggtggtctg
     1501 ggtagcttct ccagctcgtt aatcagtggt tgtagtcggt tcacatccgc ctgtcttgtg
     1561 acgtcctttc gcagaaactg gagcaggaac gcacgcagtt gcgcttcttc aggcctccgt
     1621 actctcgcca gcatggcagc ccccacaatg actttttgcg ccgtgtccag gctccggctc
     1681 ttcgccttca ggcgctgtaa tctggcctca gcttcggcaa tcttctgttc gagtgttctg
     1741 ctcatttcgt gactccgtgc gcggtgaaaa atcgcatttt agcgcgtcac tggtagttgc
     1801 aaaactgaac tggcataatg cacggcacat cacgaagtgc gcacttatac aatctccact
     1861 tcgtttcgat tgtgtgcggt ctgcgacgct aaaagaaaac ggcaaaaagg cattacggca
     1921 gaaatggcga tttatcatct cagcatgaaa atcatttcgc gaaaaaacgg ctacagtgct
     1981 gttgcttctg ctgcctaccg ttccggctct gtcatacccg atgaccgtac cggattaatc
     2041 cacgattaca cccgtaaacg cggcgttgat gatgcggtca ttctcacccc tgcgaatgca
     2101 ccgtcctggt gtggtgaccg ttccgttctc tggaatgcgg tcgagaaagc cgaacagcgc
     2161 cggaactccc agctggcaag ggagattgaa cttgccattc cccgtgagat ttcccgcgag
     2221 gccgcacggg agaccgttct cgcttttgtc cgggaaaact ttgtcagtcg gggcatgatt
     2281 gccgatgtgg cgttccatca catggaccgg accaatcccc atgcgcacat catgctgacc
     2341 acgagagctg tcggggaaac gggattcgca ggaaaggtca gggactggaa cgaccgggca
     2401 ctcgccgaga cgtggcgcgc atcatgggct gaccatgcga acagagcgct tgcgaacgcc
     2461 ggctaccagg aagagataga ccatcgttca tacgagcgtc agggactgga gaaagcgccg
     2521 ggccttcacc tcggaaaggc tgcctgtgcg atggaaaaac ggggaatgga aacagaacgc
     2581 ggtgagcaga accgtctgat taacagcctt aacctggaaa tacaggtttc ccgcacgcag
     2641 cttgctctca ggacggttca ggaagcgcag cgtaagcggg aactcagcga tgctgcacgt
     2701 cgtgcagcgg aagcccttaa cctgaccatt cccgctgcga atgcctcagc ggataccctg
     2761 cgggaattca ttgccacgct gccgcaggaa tgcgggaacg cgtgggagat gaccccggag
     2821 ttcctggcga tgagcgggaa ggtgaacgac atcgaacgtg aggggaatgc gctgctgaaa
     2881 gagcaggcca ttctcgaaaa ggagatgacc ggactcaaaa aagcacgccc tgtcgcgtcc
     2941 cttctgtcag agattcccct gatgacatgg gctgaaccgg aataccgcaa aagacaactc
     3001 cgtttctgga aactcgggaa acagattgaa tctcttcgcc gcacctacag ggccgtgaaa
     3061 gaacgggaca ttcccgcccg tcgtcaggcc tttgaaacgc agtggaatac gtggattgcg
     3121 ccgggaatgg cagagctgaa agaaaaactg tcagcacggg aagcggagcg gcgcagggag
     3181 gaagccgaag cggaagcgcg ccggaaggaa caggagcatg aggcgcggct gaaacgtcat
     3241 gataaccacc gtctgagccg tgaaacggca ttagtcgggg ttattacgga gctggggcgt
     3301 gccagagagc cgggaacggg caggataacc cgctacatga tgctgagtaa cagagccgga
     3361 gaattcacgg tatggggtga tgagctggcg cattaccccc agagtgttca tgacccggtg
     3421 aatgtttacc tgtcgccagg cggggctgtg atggtctcgg atatacgcga gggaatgcca
     3481 gaatctcatg agacgatggt gcggcctgag cgtgtgagaa tgtattccgg tgcgacggtc
     3541 cggcatgtac tggaacagat gcgccagggg tggccctctt acggttttcc ggcgctgccg
     3601 catcactggc cggataattt ttatttcagc gacgaccgca ggcccgtagc ctctccgctg
     3661 ccgtcagcgc accgggtgga tatcaccgct gatgctgtac cggaacaact catgcctgtt
     3721 gtattttcga gagagggaaa cagcaggacg ctgaatctgt tgttatgcaa agggccggag
     3781 gaaatgcttg tcgggtttgt tcgacgggaa ggagggtttt gccccgttct tgtgcttccg
     3841 tcgccggatt acagtcatct gatagtcagc accatcacgg agaacggggt atgcctggca
     3901 ggttacggag aagctataaa ccatgatgag gatactccgt acccaccgga accgcacctg
     3961 atgcagttcc ggctcaaagg ccatcatgac aggcttttgg ctgctgtcca caaaccggaa
     4021 gagatgccgg attatctctt ccgtcaactc ggttttaatc agacctggca tgagtggaag
     4081 cgggacgaac agcacaggca acaacaacgc cgccccgggc acttccgggg catgagtatg
     4141 tgatatccgg ggctgcaccc cggaccccgc caacacatca cgggccacaa aattttttgt
     4201 ggcccgctct gcgttttcta agtgttatcc ctcctgattt ctaaaaaatt ttccacctga
     4261 acttgacaga aaaaacgatg acgggtactt tttgatctgt acataaaacc agtggtttta
     4321 tgtacagtat taatcatgta attaattgtt ttaacgctta aaagagggag tttttatgag
     4381 cggtggcgat ggacgcggcc ataacacggg cgcgcatagc acaagtggta acattaatgg
     4441 tggcccgacc gggcttggtg taggtggtgg tgcttctgat ggttccgggt ggagttcgga
     4501 aaataacccg tggggtggtg gttccggtag cggcattcac tggggtggtg gttccggtca
     4561 tggtaatggc ggggggaatg gtaattccgg tggtggctcg ggaacaggcg gtaatctgtc
     4621 agcagtagct gcgccagtgg catttggttt tccggcactt tccactccag gagctggcgg
     4681 tctggcggtc agtatttcag cgggagcatt atcggcagct attgctgata tgatggctgc
     4741 cctgaaagga ccgtttaaat ttggtctttg gggggtggct ttatatggtg tattgccatc
     4801 acaaatagcg aaagatgacc ccaatatgat gtcaaagatt gtgacgtcat tacccgcaga
     4861 tgatattact gaatcacctg tcagttcatt acctctcgat aaggcaacag taaacgtaaa
     4921 tgttcgtgtt gttgatgatg taaaagacga acgacagaat atttcggttg tttcaggtgt
     4981 tccgatgagt gttccggtgg ttgatgcaaa acctaccgaa cgtccaggtg tttttacggc
     5041 atcaattcca ggtgcacctg ttctgaatat ttcagttaat aacagtacgc cagcagtaca
     5101 gacattaagc ccaggtgtta caaataatac tgataaggat gttcgcccgg caggatttac
     5161 tcaggggggt aataccaggg atgcagttat tcgattcccg aaggacagcg gtcataatgc
     5221 cgtatatgtt tcagtgagtg atgttcttag ccctgaccag gtaaaacaac gtcaagatga
     5281 agaaaatcgc cgtcagcagg aatgggatgc tacgcatccg gttgaagcgg ctgagcgaaa
     5341 ttatgaacgc gcgcgtgcag agctgaatca ggcaaatgaa gatgttgcca gaaatcagga
     5401 gcgacaggct aaagctgttc aggtttataa ttcgcgtaaa agcgaacttg atgcagcgaa
     5461 taagactctt gctgatgcaa tagctgaaat aaaacaattt gatcgatttg cccatgaccc
     5521 aatgtctggc ggtcacagaa tgtggcaaat ggccgggctt aaagcccagc gggcgcagac
     5581 ggatgtaaat aataagcagg ctgcatttga tgctgctgca aaagagaagt cagatgctga
     5641 tgctgcatta agtgccgcgc aggagcgccg caaacagaag gaaaataaag aaaaggacgc
     5701 taaggataaa ttagataagg agagtaaacg gaataagcca gggaaggcga caggtaaagg
     5761 taaaccagtt ggtgataaat ggctggatga tgcaggtaaa gattcaggag cgccaattcc
     5821 agatcgcatt gctgataagt tgcgtgataa agaatttaaa aacttcgacg attttcggag
     5881 aaaattctgg gaagaagtgt cgaaagatcc tgagttaagt aagcaattta atccaggtaa
     5941 taaaaaacgc ttaagccaag gattagctcc acgggctagg aataaagata ctgtcggtgg
     6001 gcgtcgctca tttgagcttc atcacgacaa gccaatcagt caggatggtg gtgtttatga
     6061 tatggacaac ctccgtatca ctacgccgaa acgccatatt gatattcaca gaggtcagta
     6121 aaaatggaac tgaaaaacag cattagtgat tacactgaaa ctgaattcaa aaaaattatt
     6181 gaagacatca tcaattgtga aggtgatgaa aaaaaacagg atgataacct cgagcatttt
     6241 ataagtgtta ctgagcatcc tagtggttct gatctgattt attacccaga aggtaataat
     6301 gatggtagcc ctgaagctgt tattaaagag attaaagaat ggcgaactgc taacggtaag
     6361 tcaggattta aacagggctg aaatatgaat gccagttgtt taaggatgaa tgactggcat
     6421 tctttcacaa caaggagtcg ttatgaaaaa aataacaggg attattttat tgcttcttgc
     6481 agtcattatt ctggctgcat gtcaggcaaa ctatatccgg gatgttcagg gcgggaccgt
     6541 atctccgtca tcaacagctg aagtgaccgg attagcaacg cagtaacccg aaatcctctt
     6601 tgacaaaaac aaagcgtgtc aggctgattc tgacgcgctt ttttttgaag tgtcacaaaa
     6661 attccatgtg ggagatggga tctaaaatcc ccgtgcagaa ctttccatcc agggggagaa
     6721 aacttgtcgt tttgagccgt tcggtgttca gaac
//
