LOCUS       NZ_KP330456             2682 bp    DNA     circular CON 20-JUL-2023
DEFINITION  Proteus mirabilis strain C1042 plasmid p1042, complete sequence.
ACCESSION   NZ_KP330456
VERSION     NZ_KP330456.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14226531
KEYWORDS    RefSeq.
SOURCE      Proteus mirabilis
  ORGANISM  Proteus mirabilis
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Morganellaceae; Proteus.
REFERENCE   1  (bases 1 to 2682)
  AUTHORS   Chen,X., Zhang,N., Wang,Y. and Jiao,X.
  TITLE     Description of a 2,682-Base-Pair Plasmid Containing qnrD in Proteus
            mirabilis isolated from chicken
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2682)
  AUTHORS   Chen,X., Zhang,N., Wang,Y. and Jiao,X.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-DEC-2014) Yangzhou University, Jiangsu Key Laboratory
            of Zoonosis, Wenhui east road 48, Yangzhou, Jiangsu 225009, China
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI RefSeq
            Annotation Date              :: 07/20/2023 02:09:09
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision :: 6.5
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                :: 2
            CDSs (total)                 :: 2
            Genes (coding)               :: 2
            CDSs (with protein)          :: 2
            Genes (RNA)                  :: 0
            tRNAs                        :: 0
            ncRNAs                       :: 0
            Pseudo Genes (total)         :: 0
            CDSs (without protein)       :: 0
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            KP330456.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2682
                     /organism="Proteus mirabilis"
                     /mol_type="genomic DNA"
                     /strain="C1042"
                     /isolation_source="chicken"
                     /db_xref="taxon:584"
                     /plasmid="p1042"
                     /geo_loc_name="China"
                     /collection_date="2013-07-10"
     gene            join(2362..2682,1..120)
                     /locus_tag="HTD96_RS00005"
     CDS             join(2362..2682,1..120)
                     /locus_tag="HTD96_RS00005"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_015063446.1"
                     /translation="MSQLFRLASPEDYEYIEELNLWELSFDKRPVQGVRCEDPVIGAEK
                     YNQGREKFKALASRHKKHWKPNGLTFSELIRWAIECGTPEQCQLVLALYHCTNDDDYQA
                     MGIQLSRSIDNANVSPIIFFTGKNQRLLGDISMLKQLEEKVR"
                     /name="hypothetical protein"
     gene            1081..1725
                     /locus_tag="HTD96_RS00010"
     CDS             1081..1725
                     /locus_tag="HTD96_RS00010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032495680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinolone resistance pentapeptide repeat protein
                     QnrD1"
                     /protein_id="WP_012634451.1"
                     /translation="MEKHFINEKFSRDQFTGNRVKNIAFSNCDFSGVDLTDTEFVDCSF
                     YDRNSLEGCDFNRAKLKNASFKSCDLSMSNFKNISALGLEISECLAQGADFRGANFMNM
                     ITTRSWFCSAYITKTNLSYANFSRVILEKCELWENRWNGTVITGAVFRGSDLSCGEFSS
                     FDWSLADFTGCDLTGGALGELDARRINLDGVKLDGEQALQLVESLGVIVHR"
                     /name="quinolone resistance pentapeptide repeat protein
                     QnrD1"
     ARG             1082..1722
                     /name="qnrD1"
                     /gene="qnrD1"
                     /gene_name="quinolone resistance pentapeptide repeat
                     protein QnrD1"
                     /tool="amrfinderplus"
                     /drug_class="QUINOLONE"
                     /identity="100.0"
                     /coverage="100.0"
     Typing          832..987
                     /name="Col3M"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.089"
                     /coverage="100.0"
                     /evalue="2.29e-71"
ORIGIN
        1 cagttaagcc gaagtattga taatgcaaat gtcagtccga tcatcttttt cacaggtaaa
       61 aatcaacggt tattaggtga tatttcgatg ctaaaacagc tcgaagaaaa ggtgcgctga
      121 cgttaggttt acctattatt ttatgtatta tcctatctat tattctatct cttattttat
      181 ctatttcgtc tgtaataggt agaataatac atagaataag atacagaata atagatagac
      241 acaagatgac gttgtgttat ttcttaccca ttaatccacc tgttattcta cctattactt
      301 tacccgttat tgcacccaat ttaggtataa cgggcagaat aacgggtgaa ataatgggta
      361 gaatcatagt tttactaact tgcaccccat gatactttca gtatcaatgc cactcatttt
      421 ctggacgaaa atgaatgaca taaggctccg ccctctggct attttcttcg gctggacgcc
      481 tgcgaaaaaa accattcacc caagcccgtc aaactcactg cgttcgtctg accaccccct
      541 tttttcgccc ctgtatttgg tcgctcaaaa atgtggtggt cagacgcttc gcttgacggg
      601 gggctttgcc cccaaaacga aacacgttca ctggggttca cttgccatcg ctggggcgtg
      661 tcatttcgtt tcggctcccc ctgtttttcc ctttcttcgc tggacgctca tcaggataaa
      721 aacaaaaagc ctaccgccct cgttttactc ggttggtcaa atcgcttctt gccacaaaac
      781 aagtttgtga ctttcagcga tttcgcatcg ttttacttgt cagtttgcac gatgttaaaa
      841 acgcactcag aagcccgcaa aaccgttcta aactttcagc gtagatttgg gtgttttata
      901 gggtgatcgt gtcttaaaat cgtttcgagg ggctttaatg gggatgaacg ggaggttttt
      961 gctaactaac tcgcccgttt aacataaaag ggattgtatg aatcaatttt agctagagtt
     1021 taaggttgtt caaattaatg tacaatgatt gcactgtata aataaccagg tgtagcatgt
     1081 atggaaaagc actttatcaa tgaaaagttt tcacgagatc aatttacggg gaatagagtt
     1141 aaaaatattg ccttttcaaa ttgtgatttt tcaggggttg atttaactga tactgaattt
     1201 gttgattgta gtttttacga caggaatagc ttggaagggt gtgattttaa tagagccaaa
     1261 ctaaaaaacg ctagctttaa aagctgcgat ttatcaatga gtaattttaa aaacattagc
     1321 gccttaggtc ttgaaattag tgagtgttta gctcaaggag ctgattttcg aggggctaat
     1381 tttatgaata tgataactac aaggtcatgg ttttgtagtg cttatataac caagacaaat
     1441 cttagttacg ctaatttttc tagagtcata ttagaaaagt gcgaactgtg ggaaaatcgc
     1501 tggaatggca ctgtgataac tggcgccgtg tttcgtggct ccgatctttc ttgtggggag
     1561 ttttcatcgt ttgattggtc tttggctgat tttactggtt gtgatttaac gggtggggcg
     1621 cttggcgagc ttgatgcaag gcgaattaat ttagatggag tgaagttgga tggagagcag
     1681 gcgcttcagc ttgttgagag tttaggtgtt attgttcacc gataaaatct aggtaaaaaa
     1741 cgcctaatgc cccaatgtgg tactaatcaa aacggagcga agcgacatct tcatcttgtc
     1801 tttgcttttc tccatgatca gttattgggt catggtctct tagctcgtta atctggctaa
     1861 gtttggttag gttgggcttc tttcgacact tcgcaatcca agaaatccct agtccgttga
     1921 ttggtgctct tatcaggtac gcactgtaat ctttcgatac cgcagcgtga ttcggaggta
     1981 gagccggaat ttcgttttcc ggtacgtttt actaccacaa tttgcctgtt tatcctttcg
     2041 gagaccgggc taagtccgag tcaatcaagt ggtgcatttg ggttaatgtc gttggctggt
     2101 atttaatgag aacgtgacaa gcgcctctca cgttgctaag attggattcg acgtctaatc
     2161 tgagcaacga atgcacaaga tttagagtac cagagccctg tgatgctgtc acggggcttt
     2221 gttacatctg gagcttggta aacctcataa attcaattcg caacgctcgc cgcaaggcgt
     2281 gaacttgttt cacgtcgagg aagcggaatt tctcgaaagc cttatactgt ctccgttcac
     2341 acatgatcgg agggtgtctc tatgtctcaa ttatttcgtt tggcatcgcc agaagattac
     2401 gaatacatcg aagaattaaa tttatgggaa ttgtcatttg ataagcgacc ggttcaaggg
     2461 gttcgttgtg aagatccggt gatcggggca gaaaaatata atcaagggcg tgaaaaattt
     2521 aaggcgttag cgtcacggca taaaaaacac tggaaaccga acggattgac cttttcggag
     2581 ttgatccgct gggcaataga atgcggaact ccagaacaat gtcagcttgt tttagcgtta
     2641 taccattgca caaacgatga tgattatcag gcgatgggaa tt
//
