LOCUS       NZ_KP313759             2683 bp    DNA     circular CON 20-JUL-2023
DEFINITION  Proteus mirabilis strain PmZXF plasmid pPmZXF, complete sequence.
ACCESSION   NZ_KP313759
VERSION     NZ_KP313759.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14226534
KEYWORDS    RefSeq.
SOURCE      Proteus mirabilis
  ORGANISM  Proteus mirabilis
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Morganellaceae; Proteus.
REFERENCE   1  (bases 1 to 2683)
  AUTHORS   Lei,C.W., Zhang,A.Y. and Wang,H.N.
  TITLE     Molecular characteristic of Salmonella genomic island 1 associated
            with ESBLs and PMQR determinants in Proteus mirabilis isolates from
            food-producing animals
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2683)
  AUTHORS   Lei,C.W., Zhang,A.Y. and Wang,H.N.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-DEC-2014) School of Life Science, Sichuan University,
            No. 29 Wangjiang Road, Chengdu, Sichuan 610064, China
COMMENT     ##Assembly-Data-START##
            Assembly Method              :: MEGA v. 6.0
            Sequencing Technology        :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI RefSeq
            Annotation Date              :: 07/20/2023 02:06:45
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision :: 6.5
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                :: 2
            CDSs (total)                 :: 2
            Genes (coding)               :: 2
            CDSs (with protein)          :: 2
            Genes (RNA)                  :: 0
            tRNAs                        :: 0
            ncRNAs                       :: 0
            Pseudo Genes (total)         :: 0
            CDSs (without protein)       :: 0
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            KP313759.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2683
                     /organism="Proteus mirabilis"
                     /mol_type="genomic DNA"
                     /strain="PmZXF"
                     /host="chicken"
                     /db_xref="taxon:584"
                     /plasmid="pPmZXF"
                     /geo_loc_name="China"
                     /collected_by="Chang-Wei Lei"
                     /PCR_primers="fwd_name: D1-F, fwd_seq:
                     ccaggtgtagcatgtatgga, rev_name: D1-R, rev_seq:
                     aatcaacggactagggattt"
                     /PCR_primers="fwd_name: D2-F, fwd_seq:
                     agtttggttaggttgggcttct, rev_name: D2-R, rev_seq:
                     agtgagtttgacgggcttgg"
                     /PCR_primers="fwd_name: D3-F, fwd_seq:
                     gcagaataacgggtgaaata, rev_name: D3-R, rev_seq:
                     aaatcagccaaagaccaatc"
     gene            1..645
                     /locus_tag="HTD79_RS00005"
     CDS             1..645
                     /locus_tag="HTD79_RS00005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032495680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinolone resistance pentapeptide repeat protein
                     QnrD1"
                     /protein_id="WP_012634451.1"
                     /translation="MEKHFINEKFSRDQFTGNRVKNIAFSNCDFSGVDLTDTEFVDCSF
                     YDRNSLEGCDFNRAKLKNASFKSCDLSMSNFKNISALGLEISECLAQGADFRGANFMNM
                     ITTRSWFCSAYITKTNLSYANFSRVILEKCELWENRWNGTVITGAVFRGSDLSCGEFSS
                     FDWSLADFTGCDLTGGALGELDARRINLDGVKLDGEQALQLVESLGVIVHR"
                     /name="quinolone resistance pentapeptide repeat protein
                     QnrD1"
     gene            1283..1723
                     /locus_tag="HTD79_RS00010"
     CDS             1283..1723
                     /locus_tag="HTD79_RS00010"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_015063446.1"
                     /translation="MSQLFRLASPEDYEYIEELNLWELSFDKRPVQGVRCEDPVIGAEK
                     YNQGREKFKALASRHKKHWKPNGLTFSELIRWAIECGTPEQCQLVLALYHCTNDDDYQA
                     MGIQLSRSIDNANVSPIIFFTGKNQRLLGDISMLKQLEEKVR"
                     /name="hypothetical protein"
     ARG             2..642
                     /name="qnrD1"
                     /gene="qnrD1"
                     /gene_name="quinolone resistance pentapeptide repeat
                     protein QnrD1"
                     /tool="amrfinderplus"
                     /drug_class="QUINOLONE"
                     /identity="100.0"
                     /coverage="100.0"
     Typing          2435..2590
                     /name="Col3M"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.089"
                     /coverage="100.0"
                     /evalue="2.29e-71"
ORIGIN
        1 atggaaaagc actttatcaa tgaaaagttt tcacgagatc aatttacggg gaatagagtt
       61 aaaaatattg ccttttcaaa ttgtgatttt tcaggggttg atttaactga tactgaattt
      121 gttgattgta gtttttacga caggaatagc ttggaagggt gtgattttaa tagagccaaa
      181 ctaaaaaacg ctagctttaa aagctgcgat ttatcaatga gtaattttaa aaacattagc
      241 gccttaggtc ttgaaattag tgagtgttta gctcaaggag ctgattttcg aggggctaat
      301 tttatgaata tgataactac aaggtcatgg ttttgtagtg cttatataac caagacaaat
      361 cttagttacg ctaatttttc tagagtcata ttagaaaagt gcgaactgtg ggaaaatcgc
      421 tggaatggca ctgtgataac tggcgccgtg tttcgtggct ccgatctttc ttgtggggag
      481 ttttcatcgt ttgattggtc tttggctgat tttactggtt gtgatttaac gggtggggcg
      541 cttggcgagc ttgatgcaag gcgaattaat ttagatggag tgaagttgga tggagagcag
      601 gcgcttcagc ttgttgagag tttaggtgtt attgttcacc gataaaatct aggtaaaaaa
      661 cgcctaatgc cccaatgtgg tactaatcaa aacggagcga agcgacatct tcatcttgtc
      721 tttgcttttc tccatgatca gttattgggt catggtctct tagctcgtta atctggctaa
      781 gtttggttag gttgggcttc tttcgacact tcgcaatcca agaaatccct agtccgttga
      841 ttggtgctct tatcaggtac gcactgtaat ctttcgatac cgcagcgtga ttcggaggta
      901 gagccggaat ttcgttttcc ggtacgtttt actaccacaa tttgcctgtt tatcctttcg
      961 gagaccgggc taagtccgag tcaatcaagt ggtgcatttg ggttaatgtc gttggctggt
     1021 atttaatgag aacgtgacaa gcgcctctca cgttgctaag attggattgc gacgtctaat
     1081 ctgagcaacg aatgcacaag atttagagta ccagagccct gtgatgctgt cacggggctt
     1141 tgttacatct ggagcttggt aaacctcata aattcaattc gcaacgctcg ccgcaaggcg
     1201 tgaacttgtt tcacgtcgag gaagcggaat ttctcgaaag ccttatactg tctccgttca
     1261 cacatgatcg gagggtgtct ctatgtctca attatttcgt ttggcatcgc cagaagatta
     1321 cgaatacatc gaagaattaa atttatggga attgtcattt gataagcgac cggttcaagg
     1381 ggttcgttgt gaagatccgg tgatcggggc agaaaaatat aatcaagggc gtgaaaaatt
     1441 taaggcgtta gcgtcacggc ataaaaaaca ctggaaaccg aacggattga ccttttcgga
     1501 gttgatccgc tgggcaatag aatgcggaac tccagaacaa tgtcagcttg ttttagcgtt
     1561 ataccattgc acaaacgatg atgattatca ggcgatggga attcagttaa gccgaagtat
     1621 tgataatgca aatgtcagtc cgatcatctt tttcacaggt aaaaatcaac ggttattagg
     1681 tgatatttcg atgctaaaac agctcgaaga aaaggtgcgc tgacgttagg tttacctatt
     1741 attttatgta ttatcctatc tattattcta tctcttattt tatctatttc gtctgtaata
     1801 ggtagaataa tacatagaat aagatacaga ataatagata gacacaagat gacgttgtgt
     1861 tatttcttac ccattaatcc acctgttatt ctacctatta ctttacccgt tattgcaccc
     1921 aatttaggta taacgggcag aataacgggt gaaataatgg gtagaatcat agttttacta
     1981 acttgcaccc catgatactt tcagtatcaa tgccactcat tttctggacg aaaatgaatg
     2041 acatagggct ccgccctctg gctattttct tcggctggac gcctgcgaaa aaaaccattc
     2101 acccaagccc gtcaaactca ctgcgttcgt ctgaccaccc ccttttttcg cccctgtatt
     2161 tggtcgctca aaaatgtggt ggtcagacgc ttcgcttgac ggggggcttt gcccccaaaa
     2221 cgaaacacgt tcactggggt tcacttgcca tcgctggggc gtgtcatttc gtttcggctc
     2281 cccctgtttt tccctttctt cgctggacgc tcatcaggat aaaaacaaaa agcctaccgc
     2341 cctcgtttta ctcggttggt caaatcgctt cttgccacaa aacaagtttg tgactttcag
     2401 cgatttcgca tcgttttact tgtcagtttg cacgatgtta aaaacgcact cagaagcccg
     2461 caaaaccgtt ctaaactttc agcgtagatt tgggtgtttt atagggtgat cgtgtcttaa
     2521 aatcgtttcg aggggcttta atggggatga acgggaggtt tttgctaact aactcgcccg
     2581 tttaacataa aagggattgt atgaatcaat tttagctaga gtttaaggtt gttcaaatta
     2641 atgtacaatg attgcactgt ataaataacc aggtgtagca tgt
//
