LOCUS       NZ_KM107839             1934 bp    DNA     circular CON 02-JUL-2023
DEFINITION  Escherichia coli strain G3/10 plasmid pSYM3, complete sequence.
ACCESSION   NZ_KM107839
VERSION     NZ_KM107839.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02867340
KEYWORDS    RefSeq.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 1934)
  AUTHORS   Zschuettig,A., Auerbach,C., Eichhorn,C., Blom,J., Goesmann,A.,
            Jarek,M., Scharfe,M., Zimmermann,K., Wassenaar,T.M. and Gunzer,F.
  TITLE     Complete sequence of probiotic Symbioflor2 E. coli strain G3/10 and
            draft sequences of Symbioflor2 strains G1/2, G4/9, G5, G6/7 and G8
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1934)
  AUTHORS   Zschuettig,A., Auerbach,C., Meltke,S., Eichhorn,C., Brandt,M.,
            Blom,J., Goesmann,A., Jarek,M., Scharfe,M., Zimmermann,K.,
            Wassenaar,T.M. and Gunzer,F.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-JUL-2014) Institute of Medical Microbiology and
            Hygiene, TU Dresden, Medical Faculty 'Carl Gustav Carus',
            Fetscherstrasse 74, Dresden, Saxony 01307, Germany
COMMENT     ##Assembly-Data-START##
            Assembly Method              :: GS de novo assembler v. 2.5.3
            Sequencing Technology        :: 454
            ##Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI RefSeq
            Annotation Date              :: 07/02/2023 04:19:30
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision :: 6.5
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                :: 2
            CDSs (total)                 :: 2
            Genes (coding)               :: 2
            CDSs (with protein)          :: 2
            Genes (RNA)                  :: 0
            tRNAs                        :: 0
            ncRNAs                       :: 0
            Pseudo Genes (total)         :: 0
            CDSs (without protein)       :: 0
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            KM107839.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1934
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /strain="G3/10"
                     /db_xref="taxon:562"
                     /plasmid="pSYM3"
                     /note="identical sequence found in strain G5"
     gene            join(1934,1..302)
                     /locus_tag="EL76_RS00005"
     CDS             join(1934,1..302)
                     /locus_tag="EL76_RS00005"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_023150476.1"
                     /translation="MAGSIRARSLYLYLRDNSGDKKWHQALRTKASGLICVVEGFGSIL
                     LGVVALKATPATTAIVRGCDHLQKFDSKRQPTGDTAMITRQMSHRPAWDGVHAKP"
                     /name="hypothetical protein"
     gene            289..1275
                     /locus_tag="EL76_RS00010"
                     /old_locus_tag="EL76_p6501"
     CDS             289..1275
                     /locus_tag="EL76_RS00010"
                     /old_locus_tag="EL76_p6501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001529700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_016245711.1"
                     /translation="MQNPKLQNLTDYSPSDAPWDAHKSVSDDVGGIYLLAAEYERYGAR
                     MASCGGLLRFGWSTLKETGETRLRLREAHFCRVRHCPVCQWRRSLMWQARFYQSLPRIV
                     ADYPDARWMFLTLTVRNCAIGELGETLNRMNMAFQRLKDRKEFRPVQGWIRTTEVTRGS
                     DGSAHPHFHTLMMVPPSMFTRDYVKHDRWVELWRECLRVNYDPNVDVRAVKPRKPKDGE
                     SLASATAELVRGAVAETLKYSTKPADMVADPEWFLELTKQTHKRRFVATGGALKDILKL
                     DQETDADMVIGDDIPEGDDDGSRIAFEWKTESKKYRRSPSKDKAESD"
                     /name="protein rep"
     Typing          complement(1002..1190)
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="88.947"
                     /coverage="98.0"
                     /evalue="1.39e-59"
ORIGIN
        1 tggctggttc gatccgcgcg cgatccttgt atttatactt aagggataac tctggcgata
       61 aaaaatggca tcaagccttg cgtaccaagg cttcggggct tatttgcgtt gtagaaggtt
      121 ttggaagtat tctgttggga gtggtcgcct taaaagcgac ccccgcaacg acggccatcg
      181 ttcgggggtg tgaccacctg cagaaattcg attcgaagcg acaaccaaca ggtgatacgg
      241 caatgataac acgtcaaatg agccatcgcc cagcatggga cggtgtgcat gcaaaaccct
      301 aaactccaga acctcacgga ttactccccc tcagacgcgc cctgggacgc tcacaaaagc
      361 gtttctgacg acgtaggtgg gatttacctt ctcgcagccg aatatgagcg ctacggggcg
      421 cgtatggctt cctgtggcgg tttactgagg tttggttggt ctaccctcaa agaaactgga
      481 gaaactcgcc ttaggctacg tgaggcgcat ttctgccgtg tccggcactg tcctgtctgc
      541 cagtggaggc gatccctgat gtggcaagcc cgtttttatc agtccctgcc gcgtattgtt
      601 gcggattatc cagatgcacg ctggatgttc ctgaccctca cagtgcgaaa ctgcgcgatc
      661 ggggaattgg gtgagacact taaccgaatg aacatggcct tccagcgact taaggatcgc
      721 aaagagtttc gacctgttca gggctggatc cgcaccacgg aagttacacg tggaagtgac
      781 ggtagtgcgc acccgcactt tcacactctg atgatggttc ctccctcaat gttcacgcga
      841 gattacgtta aacatgaccg ctgggtagag ctttggcgag agtgtttgcg tgtgaattac
      901 gatccgaatg ttgatgttcg agcagtaaaa ccccgcaagc ctaaggacgg agaatcattg
      961 gcttctgcaa ctgcggaact tgtacggggc gcagtggctg aaaccctgaa atattccacg
     1021 aagccggctg acatggttgc tgatcctgaa tggttcctcg aattgactaa gcagacacat
     1081 aagcgccgat ttgtggctac cggtggcgca ctcaaagaca tactgaaact cgatcaggaa
     1141 actgatgccg atatggtaat cggggatgat attcccgaag gcgatgatga tggttcacgc
     1201 attgcttttg agtggaaaac cgaatccaaa aagtaccgtc gctcaccgtc aaaagataaa
     1261 gctgaatcag actgacaggg tgtcggggcg cagccctgac cacgacgttt ttgagaggac
     1321 gccgcttgtc ggcggtactc caaaaacaca tcttgtccta ttggttctac tccgatgcag
     1381 gatagggcta acgccgcaaa gtgacgtcac tcaattactg agttcggttt ccgaactcag
     1441 ttgggacaag atgtgttttt ggtacaccgc catcacgatg tcggtgccaa aaacgattcg
     1501 tcagggctgc gccccgacac cctgccaaca cctcacgcag tcagattaaa atctgccagc
     1561 gctcgccgtt tccgaaatcg tcaaactcta aatcgtgggg tcccgctggc ttgccagtgg
     1621 gttccgattt agtgattgac gacattgctg attgaaaaat tggctgaggt ggttggattc
     1681 acgaagtgag gccaaccacc tggaagacgg tttttaattg tctggtaccg gatacaacca
     1741 gaacgaatgg agttggttct gtcgtgatgc gaaaaagtat gggttcgcaa atcacagact
     1801 aaatagattt acccaattcc attcgagtga ggttgttatg ttttttgagg ttcttaatca
     1861 tgttgatagt gcgttgagcg ttgctgtttc gctcctggcg ttgtggcagt ttttggtggc
     1921 gggtgggcgt tgaa
//
