LOCUS       NZ_JQ776508             2683 bp    DNA     circular CON 23-DEC-2023
DEFINITION  Proteus mirabilis strain CGH15 plasmid pCGH15, complete sequence.
ACCESSION   NZ_JQ776508
VERSION     NZ_JQ776508.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14226285
KEYWORDS    RefSeq.
SOURCE      Proteus mirabilis
  ORGANISM  Proteus mirabilis
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Morganellaceae; Proteus.
REFERENCE   1  (bases 1 to 2683)
  AUTHORS   Zhang,S., Sun,J., Liao,X.P., Hu,Q.J., Liu,B.T., Fang,L.X., Deng,H.,
            Ma,J., Xiao,X., Zhu,H.Q. and Liu,Y.H.
  TITLE     Prevalence and plasmid characterization of the qnrD determinant in
            Enterobacteriaceae isolated from animals, retail meat products, and
            humans
  JOURNAL   Microb Drug Resist 19 (4), 331-335 (2013)
   PUBMED   23557071
REFERENCE   2  (bases 1 to 2683)
  AUTHORS   Zhang,S., Sun,J. and Liu,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-MAR-2012) South China Agricultural University, College
            of Veterinary Medicine, Wushan, Guangzhou, Guangdong 510642, China
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI RefSeq
            Annotation Date              :: 12/23/2023 06:56:03
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision :: 6.6
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                :: 2
            CDSs (total)                 :: 2
            Genes (coding)               :: 2
            CDSs (with protein)          :: 2
            Genes (RNA)                  :: 0
            tRNAs                        :: 0
            ncRNAs                       :: 0
            Pseudo Genes (total)         :: 0
            CDSs (without protein)       :: 0
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            JQ776508.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2683
                     /organism="Proteus mirabilis"
                     /mol_type="genomic DNA"
                     /strain="CGH15"
                     /isolation_source="urine"
                     /db_xref="taxon:584"
                     /plasmid="pCGH15"
                     /geo_loc_name="China"
                     /collection_date="2010-04-10"
                     /collected_by="Sen Zhang"
                     /PCR_primers="fwd_name: invdr/f, fwd_seq:
                     caggcgcttcagcttgtt, fwd_name: qnrd-f, fwd_seq:
                     cgagatcaatttacggggaata, rev_name: invdf/r, rev_seq:
                     tattccccgtaaattgatctcg, rev_name: qnrd-r, rev_seq:
                     aacaagctgaagcgcctg"
     gene            38..682
                     /locus_tag="HUF34_RS00005"
     CDS             38..682
                     /locus_tag="HUF34_RS00005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032495680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinolone resistance pentapeptide repeat protein
                     QnrD1"
                     /protein_id="WP_012634451.1"
                     /translation="MEKHFINEKFSRDQFTGNRVKNIAFSNCDFSGVDLTDTEFVDCSF
                     YDRNSLEGCDFNRAKLKNASFKSCDLSMSNFKNISALGLEISECLAQGADFRGANFMNM
                     ITTRSWFCSAYITKTNLSYANFSRVILEKCELWENRWNGTVITGAVFRGSDLSCGEFSS
                     FDWSLADFTGCDLTGGALGELDARRINLDGVKLDGEQALQLVESLGVIVHR"
                     /name="quinolone resistance pentapeptide repeat protein
                     QnrD1"
     gene            1320..1760
                     /locus_tag="HUF34_RS00010"
     CDS             1320..1760
                     /locus_tag="HUF34_RS00010"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_015063446.1"
                     /translation="MSQLFRLASPEDYEYIEELNLWELSFDKRPVQGVRCEDPVIGAEK
                     YNQGREKFKALASRHKKHWKPNGLTFSELIRWAIECGTPEQCQLVLALYHCTNDDDYQA
                     MGIQLSRSIDNANVSPIIFFTGKNQRLLGDISMLKQLEEKVR"
                     /name="hypothetical protein"
     ARG             39..679
                     /name="qnrD1"
                     /gene="qnrD1"
                     /gene_name="quinolone resistance pentapeptide repeat
                     protein QnrD1"
                     /tool="amrfinderplus"
                     /drug_class="QUINOLONE"
                     /identity="100.0"
                     /coverage="100.0"
     Typing          2472..2627
                     /name="Col3M"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.089"
                     /coverage="100.0"
                     /evalue="2.29e-71"
ORIGIN
        1 aatgattgca ctgtataaat aaccaggtgt agcatgtatg gaaaagcact ttatcaatga
       61 aaagttttca cgagatcaat ttacggggaa tagagttaaa aatattgcct tttcaaattg
      121 tgatttttca ggggttgatt taactgatac tgaatttgtt gattgtagtt tttacgacag
      181 gaatagcttg gaagggtgtg attttaatag agccaaacta aaaaacgcta gctttaaaag
      241 ctgcgattta tcaatgagta attttaaaaa cattagcgcc ttaggtcttg aaattagtga
      301 gtgtttagct caaggagctg attttcgagg ggctaatttt atgaatatga taactacaag
      361 gtcatggttt tgtagtgctt atataaccaa gacaaatctt agttacgcta atttttctag
      421 agtcatatta gaaaagtgcg aactgtggga aaatcgctgg aatggcactg tgataactgg
      481 cgccgtgttt cgtggctccg atctttcttg tggggagttt tcatcgtttg attggtcttt
      541 ggctgatttt actggttgtg atttaacggg tggggcgctt ggcgagcttg atgcaaggcg
      601 aattaattta gatggagtga agttggatgg agagcaggcg cttcagcttg ttgagagttt
      661 aggtgttatt gttcaccgat aaaatctagg taaaaaacgc ctaatgcccc aatgtggtac
      721 taatcaaaac ggagcgaagc gacatcttca tcttgtcttt gcttttctcc atgatcagtt
      781 attgggtcat ggtctcttag ctcgttaatc tggctaagtt tggttaggtt gggcttcttt
      841 cgacacttcg caatccaaga aatccctagt ccgttgattg gtgctcttat caggtacgca
      901 ctgtaatctt tcgataccgc agcgtgattc ggaggtagag ccggaatttc gttttccggt
      961 acgttttact accacaattt gcctgtttat cctttcggag accgggctaa gtccgagtca
     1021 atcaagtggt gcatttgggt taatgtcgtt ggctggtatt taatgagaac gtgacaagcg
     1081 cctctcacgt tgctaagatt ggattgcgac gtctaatctg agcaacgaat gcacaagatt
     1141 tagagtacca gagccctgtg atgctgtcac ggggctttgt tacatctgga gcttggtaaa
     1201 cctcataaat tcaattcgca acgctcgccg caaggcgtga acttgtttca cgtcgaggaa
     1261 gcggaatttc tcgaaagcct tatactgtct ccgttcacac atgatcggag ggtgtctcta
     1321 tgtctcaatt atttcgtttg gcatcgccag aagattacga atacatcgaa gaattaaatt
     1381 tatgggaatt gtcatttgat aagcgaccgg ttcaaggggt tcgttgtgaa gatccggtga
     1441 tcggggcaga aaaatataat caagggcgtg aaaaatttaa ggcgttagcg tcacggcata
     1501 aaaaacactg gaaaccgaac ggattgacct tttcggagtt gatccgctgg gcaatagaat
     1561 gcggaactcc agaacaatgt cagcttgttt tagcgttata ccattgcaca aacgatgatg
     1621 attatcaggc gatgggaatt cagttaagcc gaagtattga taatgcaaat gtcagtccga
     1681 tcatcttttt cacaggtaaa aatcaacggt tattaggtga tatttcgatg ctaaaacagc
     1741 tcgaagaaaa ggtgcgctga cgttaggttt acctattatt ttatgtatta tcctatctat
     1801 tattctatct cttattttat ctatttcgtc tgtaataggt agaataatac atagaataag
     1861 atacagaata atagatagac acaagatgac gttgtgttat ttcttaccca ttaatccacc
     1921 tgttattcta cctattactt tacccgttat tgcacccaat ttaggtataa cgggcagaat
     1981 aacgggtgaa ataatgggta gaatcatagt tttactaact tgcaccccat gatactttca
     2041 gtatcaatgc cactcatttt ctggacgaaa atgaatgaca taaggctccg ccctctggct
     2101 attttcttcg gctggacgcc tgcgaaaaaa accattcacc caagcccgtc aaactcactg
     2161 cgttcgtctg accaccccct tttttcgccc ctgtatttgg tcgctcaaaa atgtggtggt
     2221 cagacgcttc gcttgacggg gggctttgcc cccaaaacga aacacgttca ctggggttca
     2281 cttgccatcg ctggggcgtg tcatttcgtt tcggctcccc ctgtttttcc ctttcttcgc
     2341 tggacgctca tcaggataaa aacaaaaagc ctaccgccct cgttttactc ggttggtcaa
     2401 atcgcttctt gccacaaaac aagtttgtga ctttcagcga tttcgcatcg ttttacttgt
     2461 cagtttgcac gatgttaaaa acgcactcag aagcccgcaa aaccgttcta aactttcagc
     2521 gtagatttgg gtgttttata gggtgatcgt gtcttaaaat cgtttcgagg ggctttaatg
     2581 gggatgaacg ggaggttttt gctaactaac tcgcccgttt aacataaaag ggattgtatg
     2641 aatcaatttt agctagagtt taaggttgtt caaattaatg tac
//
