LOCUS       NZ_HM070379             2699 bp    DNA     circular CON 23-DEC-2023
DEFINITION  Salmonella enterica subsp. enterica serovar Infantis strain S20
            plasmid pMK100, complete sequence.
ACCESSION   NZ_HM070379
VERSION     NZ_HM070379.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14225581
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Infantis
  ORGANISM  Salmonella enterica subsp. enterica serovar Infantis
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2699)
  AUTHORS   Karczmarczyk,M., Martins,M., McCusker,M., Mattar,S., Amaral,L.,
            Leonard,N., Aarestrup,F.M. and Fanning,S.
  TITLE     Characterization of antimicrobial resistance in Salmonella enterica
            food and animal isolates from Colombia: identification of a
            qnrB19-mediated quinolone resistance marker in two novel serovars
  JOURNAL   FEMS Microbiol Lett 313 (1), 10-19 (2010)
   PUBMED   20883500
REFERENCE   2  (bases 1 to 2699)
  AUTHORS   Karczmarczyk,M., Martins,M.S., McCusker,M.M., Mattar,S., Amaral,L.,
            Leonard,N., Aarestrup,F.M. and Fanning,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-APR-2010) Centres for Food Safety & Food-borne
            Zoonomics, University College Dublin, Belfield, Dublin, Dublin 4,
            Ireland
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/23/2023 07:07:45
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3
            CDSs (total)                      :: 3
            Genes (coding)                    :: 2
            CDSs (with protein)               :: 2
            Genes (RNA)                       :: 0
            tRNAs                             :: 0
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 1
            CDSs (without protein)            :: 1
            Pseudo Genes (ambiguous residues) :: 0 of 1
            Pseudo Genes (frameshifted)       :: 0 of 1
            Pseudo Genes (incomplete)         :: 1 of 1
            Pseudo Genes (internal stop)      :: 0 of 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            HM070379.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2699
                     /organism="Salmonella enterica subsp. enterica serovar
                     Infantis"
                     /mol_type="genomic DNA"
                     /strain="S20"
                     /serovar="Infantis"
                     /isolation_source="chicken"
                     /sub_species="enterica"
                     /db_xref="taxon:595"
                     /plasmid="pMK100"
                     /geo_loc_name="Colombia"
     gene            37..681
                     /locus_tag="HS693_RS00005"
     CDS             37..681
                     /locus_tag="HS693_RS00005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017900990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinolone resistance pentapeptide repeat protein
                     QnrB19"
                     /protein_id="WP_012954666.1"
                     /translation="MTLALVGEKIDRNRFTGEKVENSTFFNCDFSGADLSGTEFIGCQF
                     YDRESQKGCNFSRAMLKDAIFKSCDLSMADFRNVSALGIEIRHCRAQGADFRGASFMNM
                     ITTRTWFCSAYITNTNLSYANFSKVVLEKCELWENRWMGTQVLGATFSGSDLSGGEFST
                     FDWRAANFTHCDLTNSELGDLDIRGVDLQGVKLDSYQASLLMERLGIAVIG"
                     /name="quinolone resistance pentapeptide repeat protein
                     QnrB19"
     gene            complement(1183..1419)
                     /locus_tag="HS693_RS00010"
     CDS             complement(1183..1419)
                     /locus_tag="HS693_RS00010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001676031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_012772745.1"
                     /translation="MARLTNLTPAEKKFLDDAVAAAERASGKKLNQPNRHIVLNRARAQ
                     IELQRYADRQRALREDERQQSDFAWSRPRAPRR"
                     /name="hypothetical protein"
     gene            <2487..2642
                     /locus_tag="HS693_RS00015"
                     /pseudo=""
     CDS             <2487..2642
                     /locus_tag="HS693_RS00015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707212.3"
                     /GO_function="GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /name="helix-turn-helix domain-containing protein"
     ARG             38..678
                     /name="qnrB19"
                     /gene="qnrB19"
                     /gene_name="quinolone resistance pentapeptide repeat
                     protein QnrB19"
                     /tool="amrfinderplus"
                     /drug_class="QUINOLONE"
                     /identity="100.0"
                     /coverage="100.0"
     Typing          complement(1585..1758)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.5600000000000002e-86"
     Typing          1737..2228
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="92.51"
                     /coverage="81.0"
                     /evalue="0.0"
ORIGIN
        1 atggcgtcat tactgtataa aaacacaggc atagatatga ctctggcatt agttggcgaa
       61 aaaattgaca gaaatcgctt caccggtgag aaagttgaaa atagtacatt ttttaactgc
      121 gatttttcag gtgccgacct gagcggcact gaatttatcg gctgccagtt ctatgatcgc
      181 gaaagtcaga aagggtgcaa ttttagtcgc gcaatgctga aagatgccat tttcaaaagc
      241 tgtgatttat caatggcaga tttccgcaac gtcagtgcct tgggcattga aattcgccac
      301 tgccgcgcac aaggcgcaga tttccgcggt gcaagcttta tgaatatgat caccacgcgc
      361 acctggtttt gcagcgcata tatcactaat actaatctaa gctacgccaa tttttcgaaa
      421 gtcgtgttgg aaaagtgtga gctgtgggaa aaccgctgga tggggactca ggtactgggt
      481 gcgacgttca gtggttcaga tctctccggc ggcgagtttt cgactttcga ctggcgagca
      541 gcaaacttca cacattgcga tctgaccaat tcggagttag gtgacttaga tattcggggt
      601 gttgatttac aaggcgttaa gttagacagc taccaggcat cgttgctcat ggagcggctt
      661 ggcatcgctg tgattggtta gttcagcgtt tacaccggga gatgcgtttg acgatttact
      721 tttaaccagt acgactcctg gcaagcattg tgaaacgttt tctccagtgg acgaatatcc
      781 tgacctaccg catcaacgac atgccatcta atgctgcatt ctggacagga atttgatgaa
      841 tatctaacca attcattttc gcgagaacaa cgaataacca ctcccgaatc atgaagccat
      901 gtcttaacga aaatatggct aactcatagc aaaaaaaaag ccccctaagg gctttttttt
      961 gtacctgacg gtcagaccga ttaaacataa catcccttgc ccgcaccccc gcaggcgccc
     1021 tcagcgcaat cctgctgcat cagggccgtt tccagcacct ttcctcacca gtatcccgga
     1081 aaaacgcccc tgatgatttc tgcgcgactg catggctatg cacgcaggtg aatggcaggt
     1141 gatttcgcag cgtcagcacc actaaaccgc caaaagccaa aatcagcggc gcggcgcgcg
     1201 cggacgtgac caggcaaaat cggactgctg ccgctcatcc tcacgtaatg cacgctggcg
     1261 gtcggcgtaa cgctgcaact caatttgcgc acgcgctctg ttcaggacga tgtgccggtt
     1321 aggctgattt agctttttac ctgacgctct ttcagctgcg gcaacagcat catcaagaaa
     1381 ttttttctct gcaggcgtca agtttgtcag tctggccata acgttctcca gtcagaataa
     1441 atcagcacag tctgccagac acagtagaaa cgatgaagcg ccagcgacgg tgaaaggcag
     1501 tcagaaacgg tgaacgggag cggattttaa tccggtgccg tgaggcgttg gacaagccgc
     1561 aggcgcgtca ttagctttta gccggtttcg gggcgcagcc ctgaaccagt cacgtagcgc
     1621 tagcggagtg tatactggct gactatgttg gcacggatgt ggaaatcagt gaagtgcttc
     1681 atgtagcagg agaaaaaagg cggcaccagc gcgtcagcag gatatgtagt acaggatata
     1741 ttccgcttcc tcgctcactg actcgctgcg ctcggtcgtt cggctgcggc gagcggtgcc
     1801 ggcttacagg cggggcggaa atttcctggg agataccagg aaggagctta acagggaaga
     1861 gataaggccg cggcgaagcc gtttttccat aggctccgcc cccctgacaa acatcatgaa
     1921 atctgacgct caaatcagtg gtggcgaaac ccgatgcggc ttaaagatac caggcgtttc
     1981 cccctggtgg ctccctcgtg ctcccccgca ttcctgcctt tcggtttacc ggtgtcattc
     2041 cgctgttatg gccgcgttta tctcattcca cgcctgacac tcagttccgc gaaggcagtt
     2101 cgctcctgga tggactgtat gcacgaaccc cccgttcagt ccgactgctg cgccttatcc
     2161 ggtaactatc atcttgagtc caacccggaa agacacgact tatcgccact ggcagcagcc
     2221 actggtaact gatttagagg agttagtctt gaagttatgc gcctgttaag gctaaactga
     2281 aagaacagat ttggttactg cgctcctcgt aagccagtta ccacggttca aagagttgct
     2341 gctctgagaa ccttcgaaaa accgccttgc agggcggttt tttcgtttac agagcaagag
     2401 attacgacgc cacagaaagg atctcaagaa gatccttcac cgtaatggaa atctatccaa
     2461 tccgagcaca taggatacac atcgttataa cgctggatct gcgtgaattc cagcagcagc
     2521 aagagaaaga ctttctacaa accagcttac agcaggctaa atttaaccag aaaaaagccg
     2581 ctgaattact gggtctgact tatcatcagc tacgtgcctt gctgaagaaa caccagatct
     2641 aatacgcatt tgcaggtgtc atactggcgg gtttgacgca taacgtcata aggtttacc
//
