LOCUS       NZ_CP155480             2025 bp    DNA     circular CON 17-MAY-2024
DEFINITION  Acinetobacter baumannii strain 2024CK-00247 plasmid unnamed4,
            complete sequence.
ACCESSION   NZ_CP155480
VERSION     NZ_CP155480.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40443483
            Assembly: GCF_039654205.1
KEYWORDS    RefSeq.
SOURCE      Acinetobacter baumannii
  ORGANISM  Acinetobacter baumannii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii
            complex.
REFERENCE   1  (bases 1 to 2025)
  AUTHORS   Hergert,J., Casey,R., Wagner,J., Young,E.L. and Oakeson,K.F.
  TITLE     Pathogen: clinical or host-associated sample
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2025)
  AUTHORS   Hergert,J., Casey,R., Wagner,J., Young,E.L. and Oakeson,K.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-MAY-2024) Utah Public Health Laboratory, Utah Public
            Health Laboratory Infectious Disease submission group, 4431 S 2700
            W, Salt Lake City, UT 84129, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.5.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 20.0x
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_039654205.1-RS_2024_05_17
            Annotation Date                   :: 05/17/2024 00:28:22
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,081
            CDSs (total)                      :: 3,987
            Genes (coding)                    :: 3,893
            CDSs (with protein)               :: 3,893
            Genes (RNA)                       :: 94
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 94
            CDSs (without protein)            :: 94
            Pseudo Genes (ambiguous residues) :: 0 of 94
            Pseudo Genes (frameshifted)       :: 35 of 94
            Pseudo Genes (incomplete)         :: 55 of 94
            Pseudo Genes (internal stop)      :: 11 of 94
            Pseudo Genes (multiple problems)  :: 7 of 94
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP155480.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2025
                     /organism="Acinetobacter baumannii"
                     /mol_type="genomic DNA"
                     /strain="2024CK-00247"
                     /isolation_source="skin"
                     /host="Homo sapiens"
                     /db_xref="taxon:470"
                     /plasmid="unnamed4"
                     /geo_loc_name="USA"
                     /collection_date="2024-02-20"
     gene            complement(join(1077..2025,1..56))
                     /locus_tag="ABDZ19_RS20395"
                     /old_locus_tag="ABDZ19_20395"
     CDS             complement(join(1077..2025,1..56))
                     /locus_tag="ABDZ19_RS20395"
                     /old_locus_tag="ABDZ19_20395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000568086.1"
                     /GO_process="GO:0006260 - DNA replication [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage/plasmid replication protein, II/X family"
                     /protein_id="WP_000568086.1"
                     /translation="MIDWASAILPCKHDPSKLISGVVMSFDPLGNNEWIVNKTLSVEGS
                     YSSKIQIKSHTDNQIYISGNPTKFLQGHNLFGSNDLVSIMDSCFEKLLTYDNLGLCPDP
                     FQRAAIKDGYYELTRVDVNETWHLKNKNEVLAWIRAVGETAILKHRGAGQFSGDTAYFG
                     KNSRRWSLKCYSKGLEILAKGHKLPQELCIPEMIEYANKALRIEGVIRQLELKRRHLNV
                     AANWDIDTAEVLLLEYISKLEMSDVYMLKDDVLDSLPHRLRLTYQSWLNGDDLKQILPH
                     NTFYRYKKALREYGIDISTKSPKEKNNVIPLIRVLEAKPVGIPDWAYEKGLVA"
                     /name="phage/plasmid replication protein, II/X family"
     gene            complement(53..331)
                     /locus_tag="ABDZ19_RS20400"
                     /old_locus_tag="ABDZ19_20400"
     CDS             complement(53..331)
                     /locus_tag="ABDZ19_RS20400"
                     /old_locus_tag="ABDZ19_20400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001143137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001143137.1"
                     /translation="MPTQKPRIALTVPDEINQTLDRLYELTGTPKSKLIVEMLEQYVPI
                     LEQVVDTLEKIKSDKENGKEIAKKFAQDMLFDGQEMLGIMAKEARDL"
                     /name="hypothetical protein"
     gene            complement(785..1009)
                     /locus_tag="ABDZ19_RS20405"
                     /old_locus_tag="ABDZ19_20405"
     CDS             complement(785..1009)
                     /locus_tag="ABDZ19_RS20405"
                     /old_locus_tag="ABDZ19_20405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000752628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000752628.1"
                     /translation="MADANTTAFEFLGKTVSFEYVRHIQITEQSSIDFREKVSGVITNI
                     VLSLNSEPEISINDGDFYSLSDLINFTVS"
                     /name="hypothetical protein"
ORIGIN
        1 atgagcttac tagggtcgtg tttacaaggg agtattgcag atgcccaatc aatcataaat
       61 cgcgagcctc tttagccata atgcctaaca tttcctgacc atcaaaaagc atatcttgag
      121 caaatttttt agctatttcc ttaccgtttt ccttgtcaga tttgattttt tccaaggtgt
      181 cgactacttg ctcaagaata ggaacatatt gctccaacat ctctacgata agcttcgatt
      241 taggcgtacc agtgagttcg tacaaacgat ctaaagtttg attaatttca tcaggaacag
      301 ttaaggcgat tctaggtttt tgagtaggca tattgtttta ggtgtaacta ttttggatta
      361 atgtagcact ctaaaataac aaagtaaata gaataattcc cgaaagtggt acaaatgtgc
      421 agggggggaa atgtagtgtt tatctagtat tgtctcgtat cagaatacca ctatggtaca
      481 aatgtgcagt attactaaca ctgcacaccc cctcggcgac aagtctgcct gagcgggtgt
      541 tggtgggtgg atatgcgagc atagctcggt tcttactgtt cttaggcaaa agggagctgt
      601 aatcagagag ggaagtttca agatttttat ggaatcagtt cactcgtaga cactcgctct
      661 ggaactaaag gttatatcag taatatttag tagcgcagga taggcaaatg tattgcaaat
      721 ggtagttttg tcatacaaaa aaagcgccac atggacgctt ttggggtgga atctagtcct
      781 atatttagga aactgtgaaa ttaattaaat cagataggga gtaaaaatcc ccatcattta
      841 tagaaatttc aggttcagaa ttgagactga gaacaatatt agtgatgact ccagaaacct
      901 tttctctaaa atcaatcgaa gattgttcag ttatttgaat gtggcggaca tattcaaatg
      961 aaacagtctt gcctaaaaat tcgaaagcag tagtattggc atcagccatg atgatctcct
     1021 cgaaagatcg atgtggttag ctgtataggg ggattgccgt ccctctatgc agcggtttaa
     1081 gcgactagac ccttttcata agcccagtca ggaataccta caggttttgc ttctaaaacc
     1141 cgaattaatg gaattacatt atttttctct ttaggtgact ttgtagaaat atctatccca
     1201 tattcacgaa gagccttttt ataacgataa aaagtgttat ggggtaaaat ctgcttcaga
     1261 tcatcaccat ttagccatga ttgatatgta aggcgtaggc gatgaggcaa agagtcaaga
     1321 acatcatctt tgagcatata gacatcactc atttctaatt tagatatata ttctaggagt
     1381 aacacctctg ctgtgtctat atcccaatta gcagctacat ttaaatgacg tcttttaagc
     1441 tctaattgtc ttataacacc ctctattctc aaggctttgt ttgcatattc aatcatttca
     1501 ggaatacata attcctgtgg taatttatga ccttttgcca aaatttctaa acctttggag
     1561 taacacttta gagaccatcg gcgagaattt ttaccaaaat aagcagtatc accagagaat
     1621 tgaccagccc cacgatgttt aagaattgct gtttcaccta cagcccgaat ccaggctaga
     1681 acctcatttt tatttttcag atgccaagtt tcatttacat ccaccctagt cagttcatag
     1741 taaccatctt taatagcagc tctttgaaat gggtcggggc ataaacctaa attatcgtat
     1801 gtcaaaagct tttcaaaaca agaatccatt attgaaacta ggtcattaga accgaatagg
     1861 ttatgacctt gtaaaaattt agttgggttg cccgaaatgt aaatctgatt atcagtatga
     1921 gatttaattt gaatctttga agaataagaa ccctcaacac tcaatgtttt attaacaatc
     1981 cattcattgt tacccaatgg gtcaaatgac ataacaacgc ccgat
//
