LOCUS       NZ_CP154377             1810 bp    DNA     circular CON 08-MAY-2024
DEFINITION  Acinetobacter baumannii strain NCSR_106 plasmid pNCSR_106-1,
            complete sequence.
ACCESSION   NZ_CP154377
VERSION     NZ_CP154377.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN41107056
            Assembly: GCF_039545565.1
KEYWORDS    RefSeq.
SOURCE      Acinetobacter baumannii
  ORGANISM  Acinetobacter baumannii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii
            complex.
REFERENCE   1  (bases 1 to 1810)
  AUTHORS   Harmer,C.J. and Hall,R.M.
  TITLE     Complete genome of NCSR_106
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1810)
  AUTHORS   Harmer,C.J. and Hall,R.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-APR-2024) School of Life and Environmental Sciences,
            The University of Sydney, Cnr Maze Cres and Butlin Ave, The
            University of Sydney, NSW 2006, Australia
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.0
            Assembly Name                     :: NCSR_106 Hybrid assembly
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 60.0x
            Sequencing Technology :: Illumina HiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_039545565.1-RS_2024_05_07
            Annotation Date                   :: 05/07/2024 14:01:09
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,131
            CDSs (total)                      :: 4,034
            Genes (coding)                    :: 3,932
            CDSs (with protein)               :: 3,932
            Genes (RNA)                       :: 97
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 57 of 102
            Pseudo Genes (incomplete)         :: 47 of 102
            Pseudo Genes (internal stop)      :: 23 of 102
            Pseudo Genes (multiple problems)  :: 22 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP154377.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1810
                     /organism="Acinetobacter baumannii"
                     /mol_type="genomic DNA"
                     /strain="NCSR_106"
                     /isolation_source="Carriage"
                     /host="Homo sapiens"
                     /db_xref="taxon:470"
                     /plasmid="pNCSR_106-1"
                     /geo_loc_name="Viet Nam"
                     /lat_lon="21.00 N 105.83 E"
                     /collection_date="2007-04-11"
     gene            complement(join(949..1810,1..344))
                     /locus_tag="AAID36_RS20650"
                     /old_locus_tag="AAID36_20665"
     CDS             complement(join(949..1810,1..344))
                     /locus_tag="AAID36_RS20650"
                     /old_locus_tag="AAID36_20665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003115284.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006260 - DNA replication [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_228136172.1"
                     /translation="MYANTQKTQTMPDVCRSVNGHHSGIGSGSLGIFTKSPVILTNKGV
                     QRIHAFLLQDQSAKLLPKERVCNCLKKRIDKTKQREVKYNESRKKAHWANVQRCGSVWT
                     CPVCAKQITEKRREELKKGLDTWKNDHLGGVLLLTLTFSHSVNESLSSLLKRQKHAYKR
                     FFENTRVVNLMKSIFVEHKIKGFEVTYGQNGWHPHNHVLLLTKYQVHNFSLYRDELSRI
                     WIDCCTRSGLSAPSMEHGLDLRDGTYAEQYVSKWGLEHELTKGHVKQGRNGGFTPFDLL
                     QYSMLEATMNGRTSASLWQEFAISTKGARQLVWSRGLKKLLKIEEKTDEELAEETEQEA
                     ISMRTVDDFAFSLLCTHQLRHEFLHCLERDWENGCFGNGEAEQLLIALVEHEIERLNNM
                     TT"
                     /name="protein rep"
     gene            complement(421..669)
                     /locus_tag="AAID36_RS20655"
                     /old_locus_tag="AAID36_20670"
     CDS             complement(421..669)
                     /locus_tag="AAID36_RS20655"
                     /old_locus_tag="AAID36_20670"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_046127615.1"
                     /translation="MARKRIALSVRPEYHEKLHKLAEYQNTTITTVVGDLLNECESAVD
                     VILKAYEEIEKGVDKNKVLTNMLADGLGIASEKLKQE"
                     /name="hypothetical protein"
ORIGIN
        1 ttctctgtaa tttgctttgc acatacagga caagtccata cagacccaca gcgctgaacg
       61 ttcgcccagt gagctttttt tcttgattcg ttatatttga cttcccgttg cttggtttta
      121 tcaattcgtt tttttaagca gttacaaaca cgttctttcg gcaataactt tgcagattga
      181 tcctgtaaca ggaaagcatg tattcgctga acgcctttat tagtaaggat tacaggagat
      241 ttcgtaaata taccaaggga gccgctacca atgccggagt gatgtccgtt cacggaacgg
      301 cacacgtccg gcattgtttg cgttttttgg gtattagcgt acaatttagt tacctcgttg
      361 tattagcgta caaacaggat tccaaagccc tagtgagtac cagtcactgg ggctttactt
      421 ttattcctgc ttcaattttt ctgatgcaat acctaatcca tctgcaagca tatttgttaa
      481 aaccttgttt ttgtccacgc ctttttcgat ctcttcatag gcttttaaga tcacatccac
      541 cgcagattca cactcgttca ataagtcacc gactacagtt gtaatagtag tattttggta
      601 ctcagctaat ttgtgtaatt tctcgtgata ttcaggtctc acggacaaag caattctttt
      661 tctagccatg ttgccaattc ctattttgtg ttaccaatat tacagctatt caaaaaataa
      721 gcaaatgttt tcgtgacgtt tttgggaacc ccaacccaaa aactaaaaac tcccgatctt
      781 ggtttagatg ggagcttgta atcagggggg gaaggtttgt aattcaatta tgtcagttcg
      841 ctcgtagaca ctcgctctgt cgtgtcggtc ggtcgttcct cctcctcact catcgctcgt
      901 atctacatgc ttatagacat gttgtcatgt atacatgttt acttgttgtc atgttgtcat
      961 gttattcagc cgttctattt catgttccac cagggcaatt aaaagttgtt ctgcttctcc
     1021 atttccaaaa caaccatttt cccaatctct ttcaagacaa tgtaaaaatt catggcgtaa
     1081 ctggtgagtg cataaaagac taaatgcaaa atcatcaacg gtacgcattg aaatagcttc
     1141 ttgttctgtt tcttccgcta attcttcgtc cgtcttttct tcaatcttga gtaatttttt
     1201 aagaccacgt gaccatacca gctggcgagc gccctttgtt gaaattgcaa attcttgcca
     1261 aaggcttgca gatgttctgc cattcatagt tgcttcgagc atagaatatt ggagtaaatc
     1321 gaatggagta aaaccaccat tacgaccctg cttcacatgg ccttttgtga gttcgtgttc
     1381 tagtccccac tttgaaacat actgttcagc ataagtacca tcacgtaaat ctaacccatg
     1441 ttccatactg ggagccgata ggccagatcg ggtacagcag tcaatccaaa ttcgtgaaag
     1501 ttcatcacgg tacagtgaaa agttatgcac ctggtattta gttaaaagca aaacgtgatt
     1561 atggggatgc caaccatttt gaccgtaggt aacttcaaag cccttgatct tatgttcaac
     1621 aaaaatggac ttcatcaggt taactacacg ggtattttca aaaaatcgtt tatatgcgtg
     1681 tttctgacgt tttaagagcg atgagagcga ttcatttaca gaatgagaga aagtaagggt
     1741 aagcagcaaa acaccgccta aatggtcatt tttccatgta tctaagccct ttttcagttc
     1801 ttccctgcgt
//
