LOCUS       NZ_CP154376             2278 bp    DNA     circular CON 08-MAY-2024
DEFINITION  Acinetobacter baumannii strain NCSR_106 plasmid pNCSR_106-2,
            complete sequence.
ACCESSION   NZ_CP154376
VERSION     NZ_CP154376.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN41107056
            Assembly: GCF_039545565.1
KEYWORDS    RefSeq.
SOURCE      Acinetobacter baumannii
  ORGANISM  Acinetobacter baumannii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii
            complex.
REFERENCE   1  (bases 1 to 2278)
  AUTHORS   Harmer,C.J. and Hall,R.M.
  TITLE     Complete genome of NCSR_106
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2278)
  AUTHORS   Harmer,C.J. and Hall,R.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-APR-2024) School of Life and Environmental Sciences,
            The University of Sydney, Cnr Maze Cres and Butlin Ave, The
            University of Sydney, NSW 2006, Australia
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.0
            Assembly Name                     :: NCSR_106 Hybrid assembly
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 60.0x
            Sequencing Technology :: Illumina HiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_039545565.1-RS_2024_05_07
            Annotation Date                   :: 05/07/2024 14:01:09
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,131
            CDSs (total)                      :: 4,034
            Genes (coding)                    :: 3,932
            CDSs (with protein)               :: 3,932
            Genes (RNA)                       :: 97
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 57 of 102
            Pseudo Genes (incomplete)         :: 47 of 102
            Pseudo Genes (internal stop)      :: 23 of 102
            Pseudo Genes (multiple problems)  :: 22 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP154376.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2278
                     /organism="Acinetobacter baumannii"
                     /mol_type="genomic DNA"
                     /strain="NCSR_106"
                     /isolation_source="Carriage"
                     /host="Homo sapiens"
                     /db_xref="taxon:470"
                     /plasmid="pNCSR_106-2"
                     /geo_loc_name="Viet Nam"
                     /lat_lon="21.00 N 105.83 E"
                     /collection_date="2007-04-11"
     gene            843..1775
                     /gene="repM"
                     /locus_tag="AAID36_RS20645"
                     /old_locus_tag="AAID36_20660"
     CDS             843..1775
                     /gene="repM"
                     /locus_tag="AAID36_RS20645"
                     /old_locus_tag="AAID36_20660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005265321.1"
                     /GO_function="GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA]"
                     /GO_process="GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein RepM"
                     /protein_id="WP_000711927.1"
                     /translation="MKKELVVKDNALINASYNLDLSEQRLILLAILEARQSNTPNDKDL
                     TIHAESYINHFNVHRNTAYKVLKDACKSLFDRRFSYQKLTQKGNIENVISRWVQRISYV
                     ENEALVRIKFSDDVVPLITNLEKHFTSYELEQVSSLTSVYAIRLYELLIAWRSTGKVTM
                     VELEELRLKLGIEPNEYKRMGQFKEKVLHLAIDQINKYTDIKAEYEQHKRGRSIIGFSF
                     KFKQKQQPKKLDSKRDPNTPDFFIRMTDAQRHLFGNKLAHDARVQSEYSHLIGTGSYED
                     FAKLLADMLAEEQHFKMFYPLLVEHGYKA"
                     /name="repM"
     Typing          1204..1775
                     /name="rep_cluster_1280"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 taagcgttca gcgaatccga aggacatacg agcctaagcg aaatatgcac ctaaaagggg
       61 gtgggtcaac tccgtaggag gatgacgggg cgcgagcacg aagtgcgctg caacttggag
      121 cgatagcgga aagtgaaagg caacaaaaaa cgattattaa gggcgtccag cccttaaagt
      181 acaaggaatc ctgacgtcca ggaaggacga gcgaagcgag cttgtacggt aattgttttt
      241 aggcgcagcg aagcgaagtg tctgtgcctt ttactgtgct tttatcggtg cactaaaaat
      301 ccaataaaag caccatagaa agcacagata gaattaaccg agcgagtgtc tacgagcgat
      361 tgagcatcat caaaatttcg ccctcgcctt ttctctgatt acaagctccc tttcgatttt
      421 aaacggtagg tacagagcat cccgaatggg tgcgaacttt ggagcttttg cttttcaaaa
      481 agtatgagcg aagcgaatac attacaaatg cttttgcttt tagatttcac aaacaggatt
      541 aactaaaaac tgccccacga agcgaggaac gagcttcaat agagtacgag ctttagcgag
      601 tacatagggc agttttaagc actccccttt ttttaataat ttttaatttt ttaattttta
      661 gcctctgtaa ttaattgata aataataata aaaataagga taagtacacc tttatcttgc
      721 aataagtaca cctttatctt gcaataagta cacctttatc ttgcaataag tacaccttta
      781 tcttgcaaag tgacacttaa taaaatagag tgtacttata tacttaaaag acatgtgtgc
      841 ttatgaaaaa agaactagtc gttaaagata atgcactaat aaatgccagt tataatttag
      901 acctatcaga acaacgttta atactgttag ccatacttga agctaggcaa tcaaatacac
      961 ccaatgataa agatttgacg attcatgctg aaagctatat caaccatttc aatgttcata
     1021 gaaatacagc ctataaagtt cttaaagatg cttgcaaaag cctatttgat cgtagattta
     1081 gctatcaaaa actgactcaa aagggcaaca ttgagaatgt aataagtcga tgggtacaac
     1141 gaatatctta tgtagagaat gaagctcttg ttcgtattaa gttttctgat gatgttgtac
     1201 cgttgattac aaatttagaa aaacacttca ctagttatga actagagcaa gtcagcagtt
     1261 taactagtgt ttacgctata cgcttgtatg agttgcttat cgcatggcgt agtacgggca
     1321 aagtgactat ggtagagcta gaagagctaa gattaaaact aggcatagaa cccaatgaat
     1381 acaagagaat ggggcaattt aaagaaaaag ttttacacct tgccattgat caaattaata
     1441 agtacacaga tataaaagca gagtatgaac aacacaaacg tggtcgttca attattggtt
     1501 tttcatttaa gtttaagcag aaacaacaac cgaaaaaatt agattctaag cgtgacccaa
     1561 acacacctga cttttttatc agaatgaccg atgcacaacg ccacttattt gggaacaaac
     1621 tagcccatga tgctcgtgta caaagcgaat acagccattt aattggtact ggaagctatg
     1681 aagactttgc aaaattactg gcggatatgc ttgcagaaga acagcatttt aagatgtttt
     1741 accctttgct tgtagagcat ggttacaaag cataaatctt gtcgtattct atcaatggta
     1801 gataagtcat ttcgaccttc cttatctatg tacaagataa ggtggcgcca ccaatacgcc
     1861 aatattggtg gatagccacc aacccctcta aattgcgttt taagcgatcc aaatccaaca
     1921 agctacattc acatacccac tgcgagcaaa gctcgaaata tcgcatccta tgagcaaata
     1981 gagcatgtaa tcagggaggg tgtgtcttgt ttttgcattt catcagttca ctcgtagaca
     2041 ctcgctctaa aaatctatct gtgcttttca ttttggcttt agccaaagaa agccccgaag
     2101 gggtgtgaag cgaaagcgga acatcatcga agccccagcg gagatgactg gggggagccg
     2161 acaacgtaaa agggagtgga cacgaacttt agacatcccc agatgtcgtt agttgttggg
     2221 gggcaagccc accccgtcaa actatcccga aggggagttg acccacctcg ttttagtg
//
