LOCUS       NZ_CP154375             2343 bp    DNA     circular CON 08-MAY-2024
DEFINITION  Acinetobacter baumannii strain NCSR_106 plasmid pNCSR_106-3,
            complete sequence.
ACCESSION   NZ_CP154375
VERSION     NZ_CP154375.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN41107056
            Assembly: GCF_039545565.1
KEYWORDS    RefSeq.
SOURCE      Acinetobacter baumannii
  ORGANISM  Acinetobacter baumannii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii
            complex.
REFERENCE   1  (bases 1 to 2343)
  AUTHORS   Harmer,C.J. and Hall,R.M.
  TITLE     Complete genome of NCSR_106
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2343)
  AUTHORS   Harmer,C.J. and Hall,R.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-APR-2024) School of Life and Environmental Sciences,
            The University of Sydney, Cnr Maze Cres and Butlin Ave, The
            University of Sydney, NSW 2006, Australia
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.0
            Assembly Name                     :: NCSR_106 Hybrid assembly
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 60.0x
            Sequencing Technology :: Illumina HiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_039545565.1-RS_2024_05_07
            Annotation Date                   :: 05/07/2024 14:01:09
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,131
            CDSs (total)                      :: 4,034
            Genes (coding)                    :: 3,932
            CDSs (with protein)               :: 3,932
            Genes (RNA)                       :: 97
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 57 of 102
            Pseudo Genes (incomplete)         :: 47 of 102
            Pseudo Genes (internal stop)      :: 23 of 102
            Pseudo Genes (multiple problems)  :: 22 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP154375.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2343
                     /organism="Acinetobacter baumannii"
                     /mol_type="genomic DNA"
                     /strain="NCSR_106"
                     /isolation_source="Carriage"
                     /host="Homo sapiens"
                     /db_xref="taxon:470"
                     /plasmid="pNCSR_106-3"
                     /geo_loc_name="Viet Nam"
                     /lat_lon="21.00 N 105.83 E"
                     /collection_date="2007-04-11"
     gene            751..1935
                     /locus_tag="AAID36_RS20635"
                     /old_locus_tag="AAID36_20650"
     CDS             751..1935
                     /locus_tag="AAID36_RS20635"
                     /old_locus_tag="AAID36_20650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003115284.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006260 - DNA replication [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_032071712.1"
                     /translation="MNIFYGENPSSASSKSLENSQSLGIKTKSHVMLTPQGFQRVHDYL
                     LQDQSRKLLPKERVSKCRRLRIDKTKTRTVMYNEHREKAHYGNVQICGSIWSCPVCAKQ
                     ITQKRRNELGKGIESWKTAHNGSVYLLTLTFSHSPDQSLKSNLEGLKRAMKRFYETTRV
                     QAIFKKLSVFHKIKGLEVTYGQNGWHPHHHVLLLAEHHDLRFKDYTSELTELWIKACIK
                     SGLNAPSMRHGLDLRNGSYADQYVSKWGLEDELSKGHVKKGRNGGFTPFDLLNFSIEDN
                     EIYGKKPSKLFQEFAISMKGARQLVWSRGLKKLLGIEEKSDEELAVETDKASITLNRVE
                     DLVFELLCRYQLRHQYLEAIKHDYETGSFGSGLADQLIEQVVNYEIKQMQQVFS"
                     /name="protein rep"
     gene            2001..2156
                     /locus_tag="AAID36_RS20640"
                     /old_locus_tag="AAID36_20655"
     CDS             2001..2156
                     /locus_tag="AAID36_RS20640"
                     /old_locus_tag="AAID36_20655"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_153603842.1"
                     /translation="MATEMRQKFNCDVIFNVVEAEDTTMRMDGDLTFDEMFEPQEIFSK
                     YMEPMH"
                     /name="hypothetical protein"
     Typing          746..1935
                     /name="rep_cluster_586"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 gcaccactgg tgcatgaata tttgggcgca atatcagcgt ggcgggggtc ggtgggatgt
       61 gcggagcgcg tcctgccgac ccccgcgatg ctgatatgag agcagatatt tattttcagc
      121 ctgaaaatga aaaaacagag cgggtgtcta cccgcgaact gacacaaaac gatttaaaac
      181 cttccctctc tgattacaag ctccctttag cctaagaacg ggagttaccg agctttgctc
      241 gcaggatgct tttgtttctc gaatgagaaa cgcgtaagcg tgcattcctg aaaaaacacc
      301 ctaatttgct aggtggaaaa cacacaaaga acctgtacta aaactaggga gaataaatat
      361 aagaaaggag attcacttat gcttgattat gattttatta atttgattct tttcgtttta
      421 tcgaccttgt acacaatttt ggggtattac aaaaaatgat attccaatct attaaaaaca
      481 aggcgggaca attacgagga gtgaggagga gggcacgcac gacgacacga ccgaggaatt
      541 ggcagagcct tgtatttact gcgtgtatct ctcgtatata cggggtgttg tcatgaaaac
      601 ttgttgtctt gcttttagga atttttcagt agtaatatca acttgcacta aagtcctgtg
      661 cgaaagacct agtaaaccgt acaggcataa aaatgggctg acagtgctgg aacacttcaa
      721 cccagtgatc aacataatta aggtatgtcg atgaatatat tttatgggga aaatccgtcc
      781 tcagcaagct caaagagcct cgaaaatagc cagtcccttg gtataaagac gaaatctcat
      841 gtaatgctta cgccacaagg ctttcagcgt gtgcatgatt atctattaca agaccaatct
      901 agaaaacttc ttcctaaaga acgtgtatct aaatgtagac gtctccggat cgataaaact
      961 aagactagaa ctgttatgta taacgagcat cgggagaagg ctcattatgg caatgttcaa
     1021 atctgcggtt ctatttggtc atgtcctgtt tgtgccaagc aaatcacaca gaaaagacgt
     1081 aatgaattag gtaagggcat agagtcgtgg aaaacggctc ataatggctc tgtatatctc
     1141 cttacgctta cttttagcca ttcacctgac caatccctca aaagtaattt agagggcctt
     1201 aaacgcgcaa tgaagcgttt ttatgagaca actcgagttc aggctatttt taaaaaacta
     1261 tctgtttttc acaaaataaa aggcctagaa gttacatacg gtcagaatgg ttggcatccc
     1321 catcatcatg tacttctttt agctgaacat catgatttac gttttaaaga ttacacttct
     1381 gaattaacgg agttatggat taaagcctgt attaaatcag gattaaatgc tccatcgatg
     1441 cgccacggtt tagatcttcg aaatggctct tatgctgacc aatatgtgtc taagtggggc
     1501 cttgaagatg aactttcgaa agggcatgtg aaaaaaggtc gcaatggtgg ttttacccct
     1561 tttgatcttt taaatttttc tattgaagat aatgaaattt atggaaaaaa accttctaaa
     1621 ctttttcaag aatttgccat ttctatgaag ggtgctcgcc aactagtttg gtctcgaggt
     1681 cttaaaaaac ttttaggtat tgaagaaaaa agtgacgagg aacttgcagt agaaactgac
     1741 aaagcttcca ttactttgaa tcgtgttgaa gatctcgttt ttgaactttt atgtcgttat
     1801 caattgcgtc atcaatatct tgaagcaatt aaacatgatt atgagactgg ctcttttggt
     1861 tctggattag cagatcaact tattgagcaa gtagtgaatt atgaaattaa acaaatgcag
     1921 caggtatttt cgtgattgaa gcaatttata tttccatagg taagattcat cgaaatgtac
     1981 ctaaactaat ttgggataac atggccacag aaatgcgtca aaaatttaat tgtgacgtga
     2041 ttttcaatgt tgttgaagct gaagatacga ctatgcgtat ggatggtgat ttaacttttg
     2101 atgaaatgtt tgaacctcaa gaaatattta gtaagtacat ggaaccaatg cattaattat
     2161 taaatcactt aatggcgttt ggcgtgcgat gcacgcacat aacgccatta agtgagttct
     2221 tattagcctg gaatattcca ggcttttttg cgtgtacgca aaaatcaaaa agaaccaaat
     2281 tgacaacatg acaacaagac aatttgacaa catgaaaaca tgacaacaac ttaggctatc
     2341 tat
//
