LOCUS       NZ_CP151675             2089 bp    DNA     circular CON 24-APR-2024
DEFINITION  Proteus mirabilis strain P8 plasmid unnamed2, complete sequence.
ACCESSION   NZ_CP151675
VERSION     NZ_CP151675.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN37689401
            Assembly: GCF_038401985.1
KEYWORDS    RefSeq.
SOURCE      Proteus mirabilis
  ORGANISM  Proteus mirabilis
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Morganellaceae; Proteus.
REFERENCE   1  (bases 1 to 2089)
  AUTHORS   Sattler,J., Stelzer,Y., Schaefer,S., Noster,J., Peter,S.,
            Goettig,S., Gatermann,S.G. and Hamprecht,A.
  TITLE     Analysis of the genetic environment of blaOXA-48-like carbapenemases
            in Proteus mirabilis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2089)
  AUTHORS   Sattler,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-APR-2024) Institute for Medical Microbiology,
            Immunology and Hygiene, Universtity Hospital Cologne,
            Goldenfelsstrasse 19-21, Cologne 50935, Germany
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: unicycler v. v0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 250x
            Sequencing Technology :: Oxford Nanopore PromethION + Illumina
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038401985.1-RS_2024_04_23
            Annotation Date                   :: 04/23/2024 12:17:34
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,081
            CDSs (total)                      :: 3,972
            Genes (coding)                    :: 3,889
            CDSs (with protein)               :: 3,889
            Genes (RNA)                       :: 109
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 83
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 22 of 83
            Pseudo Genes (incomplete)         :: 63 of 83
            Pseudo Genes (internal stop)      :: 17 of 83
            Pseudo Genes (multiple problems)  :: 15 of 83
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP151675.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2089
                     /organism="Proteus mirabilis"
                     /mol_type="genomic DNA"
                     /strain="P8"
                     /host="Homo sapiens"
                     /db_xref="taxon:584"
                     /plasmid="unnamed2"
                     /geo_loc_name="Germany"
                     /collected_by="National Reference Centre for
                     multidrug-resistant gram-negative bacteria for Germany"
     gene            290..1255
                     /locus_tag="RZR83_RS20400"
                     /old_locus_tag="RZR83_20400"
     CDS             290..1255
                     /locus_tag="RZR83_RS20400"
                     /old_locus_tag="RZR83_20400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012421200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_001287824.1"
                     /translation="MSEDKFLSDYSPRDAVWDTQRTLTDSVGGIYQTAAEFERYALRMA
                     SCSGLLRFGWSTIMETGETRLRLRSAQFCRVRHCPVCQWRRTLMWQARFYQALPKIVVD
                     YPSSRWLFLTLTVRNCEIGELGTVLTAMNAAFKRMEKRKELSPVQGWIRATEVTRGKDG
                     SAHPHFHCLLMVQPSWFKGKNYVKHERWVELWRDCLRVNYEPNIDIRAVKTKTGEVVAN
                     VAEQLQSAVAETLKYSVKPEDMANDPEWFLELTRQLHKRRFISTGGALKNVLQLDRETN
                     EDLVIADDVGDGTDDGKRTAFVWDSGKRRYKRAPEKDKSD"
                     /name="protein rep"
     gene            1259..1525
                     /locus_tag="RZR83_RS20405"
                     /old_locus_tag="RZR83_20405"
     CDS             1259..1525
                     /locus_tag="RZR83_RS20405"
                     /old_locus_tag="RZR83_20405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001024536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001024536.1"
                     /translation="MNINIEYLNGNKTIGLFFLRSEAVIPDRFKNLILLIDGLSFGTFG
                     FHPHEGFEDELILYIQKTNERVKTLFVKIDLNGIKFGFLRTHS"
                     /name="hypothetical protein"
     Typing          684..915
                     /name="Col(BS512)"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.05e-118"
ORIGIN
        1 aattctcgcg cgtgatcctt gtatttatac ttaagggata aatggcggat atgaaatagt
       61 ggtttagccc agtaatgacg aggctttgag tgggttttga caggtcaaag aaaatggagc
      121 agaattgagg cgtttttaat cggcgttggg gagtgcgtca acactcccca acatttcgaa
      181 tgtgtcacct cagcggcaaa ctctggtgac atgtactggc tcgcaatgca caggtacgtg
      241 atgaatatac cacatcaaat cacagcctgc ccagatcgga gcaggcttaa tgtcagaaga
      301 taaattcctt tcggactaca gcccccgtga tgcagtttgg gatacccagc gcacgcttac
      361 cgattctgtc gggggtatct accagactgc tgctgaattc gagcgctatg cactccgtat
      421 ggcctcctgt agcggtttgt tacgttttgg ttggtctacc atcatggaaa ccggagaaac
      481 gcgcctacgg cttcgtagtg cgcaattttg ccgtgtccgt cattgccctg tctgccagtg
      541 gagaagaacc ctcatgtggc aagcccgttt ttatcaggct ctaccgaaaa tcgttgtgga
      601 ttacccgtct tcccgatggt tgtttctgac gttaactgtc aggaactgcg agataggtga
      661 acttggaaca gtccttacag caatgaatgc ggcgtttaag cgaatggaaa agcgaaagga
      721 gctatcacct gttcaggggt ggatcagggc tacggaggtg acgcgaggta aggatggcag
      781 cgcacatccg cattttcact gtctgctgat ggtgcaacct tcttggttta aagggaagaa
      841 ctacgttaag cacgaacgtt gggtagaact ctggcgcgat tgcttgcggg tgaactatga
      901 gccgaatatc gatattcggg cagtaaaaac taagacaggt gaggttgtgg ccaacgttgc
      961 cgagcaactg caaagcgcgg ttgctgaaac gctgaaatac tccgttaaac cggaagatat
     1021 ggcaaacgat cctgagtggt ttcttgagct gacgcggcag cttcacaagc gccgttttat
     1081 ctcgaccggt ggggcgctaa aaaacgtcct ccagttggat cgagaaacca atgaggatct
     1141 tgtcattgcc gacgatgtag gggatggcac tgatgacggg aagcggacgg cgtttgtctg
     1201 ggattcaggt aaacggcgtt acaaacgcgc ccctgagaag gataaatcgg attaacgtat
     1261 gaatattaat attgaatacc tgaatggaaa taagactatt ggtttatttt ttttaagaag
     1321 tgaagcggtg attcctgaca ggtttaaaaa ccttattttg cttattgatg gattaagttt
     1381 tggcacattt ggttttcatc cgcacgaagg ttttgaggat gaattaattt tatatattca
     1441 gaaaacaaac gagagggtaa aaactctttt tgtgaaaata gatttaaacg gtatcaagtt
     1501 tggattttta agaacgcatt cttagttctg gaaaagagcc agcggcaggc tgaggtgata
     1561 ggtacgagat tgcatgcaat ctctagtgct ctgtctatcc tgcattatcc tcagcattat
     1621 cctcagcctt gccaactcga caccaatgca ggatagacaa tccgatgtca aatgttaaca
     1681 ctctgcgagt ggtacatttt ccccggatta tcgtcctgag cctgccgctg gctctctttc
     1741 taccgcctcg ctttgctcgt tgctcaacgc ctcacagaca cggattaaaa tccgcatccg
     1801 ttcaccgttt tttaaagtcc gttaaaagca tgatgccatc tccgagagtt aatctcgtca
     1861 aatgctaaat cgtgggggtc ccctttgggg ttccgattta gtgattgacg acaccaccga
     1921 ttaaaaaact tatgcggggt ggatggtttc acgaagtgag gccatccacc tgtaagacag
     1981 ggttttgttt ttattccctg ttttggtgat cgggtgtgtg gaaaaggttg gggtaagccg
     2041 ttcgggggtg cttgttttgg ggggttaaaa ttgtggttat tttttgcgc
//
