LOCUS       NZ_CP151401             2101 bp    DNA     circular CON 18-APR-2024
DEFINITION  Shigella sonnei strain R15.0423 plasmid pR15.0423_2.1k, complete
            sequence.
ACCESSION   NZ_CP151401
VERSION     NZ_CP151401.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN39735790
            Assembly: GCF_038367755.1
KEYWORDS    RefSeq.
SOURCE      Shigella sonnei
  ORGANISM  Shigella sonnei
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2101)
  AUTHORS   Chiou,C.-S., Hong,Y.-P., Wang,Y.-W., Teng,R.-H. and Chen,B.-H.
  TITLE     WGS of Shigella
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2101)
  AUTHORS   Chiou,C.-S., Hong,Y.-P., Wang,Y.-W., Teng,R.-H. and Chen,B.-H.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-APR-2024) Center for Diagnostics and Vaccine
            Development, Centers for Disease Control, Taiwan, No.20, Wenxin S.
            3rd Rd., Nantun Dist., Taichung City 408, Taiwan
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: flye v. v2.9.2
            Genome Representation             :: Full
            Expected Final Version            :: No
            Genome Coverage                   :: 100x
            Sequencing Technology :: Oxford Nanopore MinION; Illumina MiSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038367755.1-RS_2024_04_18
            Annotation Date                   :: 04/18/2024 01:40:44
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,363
            CDSs (total)                      :: 5,233
            Genes (coding)                    :: 4,513
            CDSs (with protein)               :: 4,513
            Genes (RNA)                       :: 130
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 97
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 720
            CDSs (without protein)            :: 720
            Pseudo Genes (ambiguous residues) :: 0 of 720
            Pseudo Genes (frameshifted)       :: 202 of 720
            Pseudo Genes (incomplete)         :: 517 of 720
            Pseudo Genes (internal stop)      :: 124 of 720
            Pseudo Genes (multiple problems)  :: 116 of 720
            Pseudo Genes (short protein)      :: 3 of 720
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP151401.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2101
                     /organism="Shigella sonnei"
                     /mol_type="genomic DNA"
                     /strain="R15.0423"
                     /db_xref="taxon:624"
                     /plasmid="pR15.0423_2.1k"
                     /collected_by="Taiwan CDC"
     gene            1..966
                     /locus_tag="AADX55_RS26800"
                     /old_locus_tag="AADX55_26820"
     CDS             1..966
                     /locus_tag="AADX55_RS26800"
                     /old_locus_tag="AADX55_26820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012421200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_001287824.1"
                     /translation="MSEDKFLSDYSPRDAVWDTQRTLTDSVGGIYQTAAEFERYALRMA
                     SCSGLLRFGWSTIMETGETRLRLRSAQFCRVRHCPVCQWRRTLMWQARFYQALPKIVVD
                     YPSSRWLFLTLTVRNCEIGELGTVLTAMNAAFKRMEKRKELSPVQGWIRATEVTRGKDG
                     SAHPHFHCLLMVQPSWFKGKNYVKHERWVELWRDCLRVNYEPNIDIRAVKTKTGEVVAN
                     VAEQLQSAVAETLKYSVKPEDMANDPEWFLELTRQLHKRRFISTGGALKNVLQLDRETN
                     EDLVIADDVGDGTDDGKRTAFVWDSGKRRYKRAPEKDKSD"
                     /name="protein rep"
     gene            970..1236
                     /locus_tag="AADX55_RS26805"
                     /old_locus_tag="AADX55_26825"
     CDS             970..1236
                     /locus_tag="AADX55_RS26805"
                     /old_locus_tag="AADX55_26825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001024536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001024536.1"
                     /translation="MNINIEYLNGNKTIGLFFLRSEAVIPDRFKNLILLIDGLSFGTFG
                     FHPHEGFEDELILYIQKTNERVKTLFVKIDLNGIKFGFLRTHS"
                     /name="hypothetical protein"
     Typing          395..626
                     /name="Col(BS512)"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.05e-118"
ORIGIN
        1 atgtcagaag ataaattcct ttcggactac agcccccgtg atgcagtttg ggatacccag
       61 cgcacgctta ccgattctgt cgggggtatc taccagactg ctgctgaatt cgagcgctat
      121 gcactccgta tggcctcctg tagcggtttg ttacgttttg gttggtctac catcatggaa
      181 accggagaaa cgcgcctacg gcttcgtagt gcgcaatttt gccgtgtccg tcattgccct
      241 gtctgccagt ggagaagaac cctcatgtgg caagcccgtt tttatcaggc tctaccgaaa
      301 atcgttgtgg attacccgtc ttcccgatgg ttgtttctga cgttaactgt caggaactgc
      361 gagataggtg aacttggaac agtccttaca gcaatgaatg cggcgtttaa gcgaatggaa
      421 aagcgaaagg agctatcacc tgttcagggg tggatcaggg ctacggaggt gacgcgaggt
      481 aaggatggca gcgcacatcc gcattttcac tgtctgctga tggtgcaacc ttcttggttt
      541 aaagggaaga actacgttaa gcacgaacgt tgggtagaac tctggcgcga ttgcttgcgg
      601 gtgaactatg agccgaatat cgatattcgg gcagtaaaaa ctaagacagg tgaggttgtg
      661 gccaacgttg ccgagcaact gcaaagcgcg gttgctgaaa cgctgaaata ctccgttaaa
      721 ccggaagata tggcaaacga tcctgagtgg tttcttgagc tgacgcggca gcttcacaag
      781 cgccgtttta tctcgaccgg tggggcgcta aaaaacgtcc tccagttgga tcgagaaacc
      841 aatgaggatc ttgtcattgc cgacgatgta ggggatggca ctgatgacgg gaagcggacg
      901 gcgtttgtct gggattcagg taaacggcgt tacaaacgcg cccctgagaa ggataaatcg
      961 gattaacgta tgaatattaa tattgaatac ctgaatggaa ataagactat tggtttattt
     1021 tttttaagaa gtgaagcggt gattcctgac aggtttaaaa accttatttt gcttattgat
     1081 ggattaagtt ttggcacatt tggttttcat ccgcacgaag gttttgagga tgaattaatt
     1141 ttatatattc agaaaacaaa cgagagggta aaaactcttt ttgtgaaaat agatttaaac
     1201 ggtatcaagt ttggattttt aagaacgcat tcttagttct ggaaaagagc cagcggcagg
     1261 ctgaggtgat aggtacgaga ttgcatgcaa tctctagtgc tctgtctatc ctgcattatc
     1321 ctcagcatta tcctcagcat tatcctcagc cttgccaact cgacaccaat gcaggataga
     1381 caatccgatg tcaaatgtta acactctgcg agtggtatat tttccccgga ttatcgtcct
     1441 gagcctgccg ctggctctct ttctaccgcc tcgctttgct cgttgctcaa cgcctcacag
     1501 acacggatta aaatccgcat ccgttcaccg ttttttaaag tccgttaaaa gcatgatgcc
     1561 atctccgaga gttaatctcg tcaaatgcta aatcgtgggg gtcccctttg gggttccgat
     1621 ttagtgattg acgacaccac cgattaaaaa acttatgcgg ggtggatggt ttcacgaagt
     1681 gaggccatcc acctgtaaga cagggttttg tttttattcc ctgttttggt gatcgggtgt
     1741 gtggaaaagg ttggggtaag ccgttcgggg gtgcttgttt tggggggtta aaattgtggt
     1801 tattttttgc gcaattctcg cgcgtgatcc ttgtatttat acttaaggga taaatggcgg
     1861 atatgaaata gtggtttagc ccagtaatga cgaggctttg agtgggtttt gacaggtcaa
     1921 agaaaatgga gcagaattga ggcgttttta atcggcgttg gggagtgcgt caacactccc
     1981 caacatttcg aatgtgtcac ctcagcggca aactctggtg acatgtactg gctcgcaatg
     2041 cacaggtacg tgatgaatat accacatcaa atcacagcct gcccagatcg gagcaggctt
     2101 a
//
