LOCUS       NZ_CP151383             1542 bp    DNA     circular CON 18-APR-2024
DEFINITION  Shigella sonnei strain R15.1832 plasmid pR15.1832_1.5k, complete
            sequence.
ACCESSION   NZ_CP151383
VERSION     NZ_CP151383.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40122663
            Assembly: GCF_038367355.1
KEYWORDS    RefSeq.
SOURCE      Shigella sonnei
  ORGANISM  Shigella sonnei
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1542)
  AUTHORS   Chiou,C.-S., Hong,Y.-P., Wang,Y.-W., Teng,R.-H. and Chen,B.-H.
  TITLE     WGS of Shigella
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1542)
  AUTHORS   Chiou,C.-S., Hong,Y.-P., Wang,Y.-W., Teng,R.-H. and Chen,B.-H.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-APR-2024) Center for Diagnostics and Vaccine
            Development, Centers for Disease Control, Taiwan, No.20, Wenxin S.
            3rd Rd., Nantun Dist., Taichung City 408, Taiwan
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: flye v. v2.9.2
            Genome Representation             :: Full
            Expected Final Version            :: No
            Genome Coverage                   :: 100x
            Sequencing Technology :: Oxford Nanopore MinION; Illumina MiSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038367355.1-RS_2024_04_18
            Annotation Date                   :: 04/18/2024 01:29:12
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,193
            CDSs (total)                      :: 5,063
            Genes (coding)                    :: 4,437
            CDSs (with protein)               :: 4,437
            Genes (RNA)                       :: 130
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 97
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 626
            CDSs (without protein)            :: 626
            Pseudo Genes (ambiguous residues) :: 0 of 626
            Pseudo Genes (frameshifted)       :: 168 of 626
            Pseudo Genes (incomplete)         :: 435 of 626
            Pseudo Genes (internal stop)      :: 108 of 626
            Pseudo Genes (multiple problems)  :: 82 of 626
            Pseudo Genes (short protein)      :: 3 of 626
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP151383.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1542
                     /organism="Shigella sonnei"
                     /mol_type="genomic DNA"
                     /strain="R15.1832"
                     /db_xref="taxon:624"
                     /plasmid="pR15.1832_1.5k"
                     /collected_by="Taiwan CDC"
     gene            complement(437..955)
                     /locus_tag="AADX60_RS25965"
                     /old_locus_tag="AADX60_25965"
     CDS             complement(437..955)
                     /locus_tag="AADX60_RS25965"
                     /old_locus_tag="AADX60_25965"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_252382951.1"
                     /translation="MQTRNKCLQKQVFSGFLGDCAAGKFLKNTEGSCKLNELVSVAANN
                     RLHRNIEEVENLNEPEEARLMAGFFRSTRLQRNKQVQKRNLSAIAHQIYKKRTFTRPNS
                     QKRTRNVFTRLNNYSRTRSADGFDGSTARTGQNGKLSHQKTVNGTRNFFAGREALAGCR
                     GAALTRWQL"
                     /name="hypothetical protein"
     Typing          complement(389..476)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="96.629"
                     /coverage="96.0"
                     /evalue="2.61e-33"
ORIGIN
        1 gtgatagcgt cgcgtgtgac ggtattacaa ttacacatcc tgtccagaaa attcccgccg
       61 tttctcggtt tttttgcgcg tcgcagaccg cacgacaaac gaaacgaagt gaagtttgta
      121 taagtgcgca cttcgtgcac ttcgtgagtt ttctgtactg ccagtttgtc gattgcgcgg
      181 aacggctgcg tcacgaaaac ggcaaaatga tttgctgtcc ggtcgccgaa atttttgcgt
      241 agctgtggtg gctgcggtgc caaaaatcat ccgcgcgtta agtgcggatg cgcacttagt
      301 agtttctctc cttcgtcggg aaactgtgcg ctcctgtgga ggggttaacg gcgcagaact
      361 gccgatgctc tgccagcgtt ctggcgaaaa aatcgggaca ggatgtgcaa ttgtaatacc
      421 gtcacacgcg acgctatcac aattgccatc tggtcagggc tgcgccccga caccccgcca
      481 acgcctcacg gcccgcgaaa aaattccgcg tcccgttcac cgttttctga tgagaaagtt
      541 tgccgttttg acccgttcgc gccgtcgaac cgtcgaaacc gtccgccgat cgtgtgcgtg
      601 aatagttatt caggcgcgta aaaacgtttc tggtgcgttt ttggctgttt ggtcgggtga
      661 aagtgcgttt tttgtagatt tgatgtgcta tcgcgctcaa attgcgtttt tggacttgct
      721 tgtttcgttg aaggcgagta gaacgaaaaa agcccgccat taggcgagct tcttcgggtt
      781 cattgaggtt ttcgacctcc tcaatgttcc tgtggagtct gttgttagca gcgacagaaa
      841 ccagttcatt cagtttgcat gaaccttctg tattcttcaa gaattttccc gccgcacagt
      901 ctcccaggaa tcccgaaaaa acctgttttt gcaggcactt gttgcgtgtt tgcaaaggcc
      961 gtttgcggtt ggggggtcag tgacgacggc gaccgcacgc gtgagaattc cgctaccggg
     1021 gaagatactt catttttgag cggacgcctg gggagtggca caagtggttg aatgtaatgc
     1081 gcttatattg ggtttttgcc cttgggcgcg gttctgggac cagtgccagc atgttgggcg
     1141 aaatgtcgcg gcgtagacgc gggaacatgc aaacggacgt tctaccatag gtccgttccg
     1201 gtgacgatgg gcgcggctcc ggccagcata tcgctcgggc aaaactctta ccccctttta
     1261 cgccctttgc ggggtggggg gggagtttgc cggttcctca gaacgctcac caaccagcat
     1321 atggcacagc cccctgccgc accgcaatca cagactgctc taccgcaaaa aaaaaaaaag
     1381 atccctacag gatcgagaga gagatcactc cgctcgccgc agccccagcg accgaacgta
     1441 gtgagcgagt gggcgaggaa gcggaagtga accggaaacc acattgagca cgtacgcact
     1501 gatgcggggt gtcggggcgg atgccctgac caggtggtaa tt
//
