LOCUS       NZ_CP149835             2025 bp    DNA     circular CON 21-APR-2024
DEFINITION  Acinetobacter baumannii strain 2024CK-00250 plasmid unnamed4,
            complete sequence.
ACCESSION   NZ_CP149835
VERSION     NZ_CP149835.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40254323
            Assembly: GCF_037008665.1
KEYWORDS    RefSeq.
SOURCE      Acinetobacter baumannii
  ORGANISM  Acinetobacter baumannii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii
            complex.
REFERENCE   1  (bases 1 to 2025)
  AUTHORS   Hergert,J., Casey,R., Wagner,J., Young,E.L. and Oakeson,K.F.
  TITLE     Pathogen: clinical or host-associated sample
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2025)
  AUTHORS   Hergert,J., Casey,R., Wagner,J., Young,E.L. and Oakeson,K.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-MAR-2024) Utah Public Health Laboratory, Utah Public
            Health Laboratory Infectious Disease submission group, 4431 S 2700
            W, Salt Lake City, UT 84129, USA
REFERENCE   3  (bases 1 to 2025)
  CONSRTM   Clinical and Environmental Microbiology Branch: Whole genome
            sequencing antimicrobial resistance pathogens in the healthcare
            setting
  TITLE     Direct Submission
  JOURNAL   Submitted (04-MAR-2024) Division of Healthcare Quality Promotion, US
            Centers for Disease Control and Prevention, 1600 Clifton Rd,
            Atlanta, GA, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: unicycler v. 0.5.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 40.0x
            Sequencing Technology :: Oxford Nanopore GridION; Illumina MiSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037008665.1-RS_2024_04_21
            Annotation Date                   :: 04/21/2024 15:25:34
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,075
            CDSs (total)                      :: 3,981
            Genes (coding)                    :: 3,890
            CDSs (with protein)               :: 3,890
            Genes (RNA)                       :: 94
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 91
            CDSs (without protein)            :: 91
            Pseudo Genes (ambiguous residues) :: 0 of 91
            Pseudo Genes (frameshifted)       :: 33 of 91
            Pseudo Genes (incomplete)         :: 55 of 91
            Pseudo Genes (internal stop)      :: 10 of 91
            Pseudo Genes (multiple problems)  :: 7 of 91
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP149835.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2025
                     /organism="Acinetobacter baumannii"
                     /mol_type="genomic DNA"
                     /strain="2024CK-00250"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:470"
                     /plasmid="unnamed4"
                     /geo_loc_name="USA"
                     /collection_date="2024-02-21"
     gene            complement(join(1411..2025,1..390))
                     /locus_tag="WKV40_RS20365"
                     /old_locus_tag="WKV40_20365"
     CDS             complement(join(1411..2025,1..390))
                     /locus_tag="WKV40_RS20365"
                     /old_locus_tag="WKV40_20365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000568086.1"
                     /GO_process="GO:0006260 - DNA replication [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage/plasmid replication protein, II/X family"
                     /protein_id="WP_000568086.1"
                     /translation="MIDWASAILPCKHDPSKLISGVVMSFDPLGNNEWIVNKTLSVEGS
                     YSSKIQIKSHTDNQIYISGNPTKFLQGHNLFGSNDLVSIMDSCFEKLLTYDNLGLCPDP
                     FQRAAIKDGYYELTRVDVNETWHLKNKNEVLAWIRAVGETAILKHRGAGQFSGDTAYFG
                     KNSRRWSLKCYSKGLEILAKGHKLPQELCIPEMIEYANKALRIEGVIRQLELKRRHLNV
                     AANWDIDTAEVLLLEYISKLEMSDVYMLKDDVLDSLPHRLRLTYQSWLNGDDLKQILPH
                     NTFYRYKKALREYGIDISTKSPKEKNNVIPLIRVLEAKPVGIPDWAYEKGLVA"
                     /name="phage/plasmid replication protein, II/X family"
     gene            complement(387..665)
                     /locus_tag="WKV40_RS20370"
                     /old_locus_tag="WKV40_20370"
     CDS             complement(387..665)
                     /locus_tag="WKV40_RS20370"
                     /old_locus_tag="WKV40_20370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001143137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001143137.1"
                     /translation="MPTQKPRIALTVPDEINQTLDRLYELTGTPKSKLIVEMLEQYVPI
                     LEQVVDTLEKIKSDKENGKEIAKKFAQDMLFDGQEMLGIMAKEARDL"
                     /name="hypothetical protein"
     gene            complement(1119..1343)
                     /locus_tag="WKV40_RS20375"
                     /old_locus_tag="WKV40_20375"
     CDS             complement(1119..1343)
                     /locus_tag="WKV40_RS20375"
                     /old_locus_tag="WKV40_20375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000752628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000752628.1"
                     /translation="MADANTTAFEFLGKTVSFEYVRHIQITEQSSIDFREKVSGVITNI
                     VLSLNSEPEISINDGDFYSLSDLINFTVS"
                     /name="hypothetical protein"
ORIGIN
        1 atttttcaga tgccaagttt catttacatc caccctagtc agttcatagt aaccatcttt
       61 aatagcagct ctttgaaatg ggtcggggca taaacctaaa ttatcgtatg tcaaaagctt
      121 ttcaaaacaa gaatccatta ttgaaactag gtcattagaa ccgaataggt tatgaccttg
      181 taaaaattta gttgggttgc ccgaaatgta aatctgatta tcagtatgag atttaatttg
      241 aatctttgaa gaataagaac cctcaacact caatgtttta ttaacaatcc attcattgtt
      301 acccaatggg tcaaatgaca taacaacgcc cgatatgagc ttactagggt cgtgtttaca
      361 agggagtatt gcagatgccc aatcaatcat aaatcgcgag cctctttagc cataatgcct
      421 aacatttcct gaccatcaaa aagcatatct tgagcaaatt ttttagctat ttccttaccg
      481 ttttccttgt cagatttgat tttttccaag gtgtcgacta cttgctcaag aataggaaca
      541 tattgctcca acatctctac gataagcttc gatttaggcg taccagtgag ttcgtacaaa
      601 cgatctaaag tttgattaat ttcatcagga acagttaagg cgattctagg tttttgagta
      661 ggcatattgt tttaggtgta actattttgg attaatgtag cactctaaaa taacaaagta
      721 aatagaataa ttcccgaaag tggtacaaat gtgcaggggg ggaaatgtag tgtttatcta
      781 gtattgtctc gtatcagaat accactatgg tacaaatgtg cagtattact aacactgcac
      841 accccctcgg cgacaagtct gcctgagcgg gtgttggtgg gtggatatgc gagcatagct
      901 cggttcttac tgttcttagg caaaagggag ctgtaatcag agagggaagt ttcaagattt
      961 ttatggaatc agttcactcg tagacactcg ctctggaact aaaggttata tcagtaatat
     1021 ttagtagcgc aggataggca aatgtattgc aaatggtagt tttgtcatac aaaaaaagcg
     1081 ccacatggac gcttttgggg tggaatctag tcctatattt aggaaactgt gaaattaatt
     1141 aaatcagata gggagtaaaa atccccatca tttatagaaa tttcaggttc agaattgaga
     1201 ctgagaacaa tattagtgat gactccagaa accttttctc taaaatcaat cgaagattgt
     1261 tcagttattt gaatgtggcg gacatattca aatgaaacag tcttgcctaa aaattcgaaa
     1321 gcagtagtat tggcatcagc catgatgatc tcctcgaaag atcgatgtgg ttagctgtat
     1381 agggggattg ccgtccctct atgcagcggt ttaagcgact agaccctttt cataagccca
     1441 gtcaggaata cctacaggtt ttgcttctaa aacccgaatt aatggaatta cattattttt
     1501 ctctttaggt gactttgtag aaatatctat cccatattca cgaagagcct ttttataacg
     1561 ataaaaagtg ttatggggta aaatctgctt cagatcatca ccatttagcc atgattgata
     1621 tgtaaggcgt aggcgatgag gcaaagagtc aagaacatca tctttgagca tatagacatc
     1681 actcatttct aatttagata tatattctag gagtaacacc tctgctgtgt ctatatccca
     1741 attagcagct acatttaaat gacgtctttt aagctctaat tgtcttataa caccctctat
     1801 tctcaaggct ttgtttgcat attcaatcat ttcaggaata cataattcct gtggtaattt
     1861 atgacctttt gccaaaattt ctaaaccttt ggagtaacac tttagagacc atcggcgaga
     1921 atttttacca aaataagcag tatcaccaga gaattgacca gccccacgat gtttaagaat
     1981 tgctgtttca cctacagccc gaatccaggc tagaacctca ttttt
//
