LOCUS       NZ_CP149399             4593 bp    DNA     circular CON 05-APR-2024
DEFINITION  Salmonella enterica subsp. enterica serovar Typhimurium strain
            Z1323CSL0047 plasmid pZ1323CSL0047-3, complete sequence.
ACCESSION   NZ_CP149399
VERSION     NZ_CP149399.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40439939
            Assembly: GCF_037888865.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Typhimurium (Salmonella
            typhimurium)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhimurium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4593)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Complete genome sequence of Salmonella enterica subsp. enterica
            serovar Typhimurium isolated from humans and pigs
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4593)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-MAR-2024) Division of biotechnology, Jeonbuk National
            University, kobongro, Iksan 54596, South Korea
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.4.9
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 98X
            Sequencing Technology :: Illumina NovaSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037888865.1-RS_2024_04_05
            Annotation Date                   :: 04/05/2024 21:21:35
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,865
            CDSs (total)                      :: 4,742
            Genes (coding)                    :: 4,621
            CDSs (with protein)               :: 4,621
            Genes (RNA)                       :: 123
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 121
            CDSs (without protein)            :: 121
            Pseudo Genes (ambiguous residues) :: 0 of 121
            Pseudo Genes (frameshifted)       :: 47 of 121
            Pseudo Genes (incomplete)         :: 84 of 121
            Pseudo Genes (internal stop)      :: 23 of 121
            Pseudo Genes (multiple problems)  :: 30 of 121
            Pseudo Genes (short protein)      :: 1 of 121
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP149399.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4593
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhimurium"
                     /mol_type="genomic DNA"
                     /strain="Z1323CSL0047"
                     /serovar="Typhimurium"
                     /host="Chicken"
                     /sub_species="enterica"
                     /db_xref="taxon:90371"
                     /plasmid="pZ1323CSL0047-3"
                     /geo_loc_name="South Korea"
                     /collection_date="2023-03-22"
     gene            complement(126..449)
                     /locus_tag="WI428_RS24300"
                     /old_locus_tag="WI428_24300"
     CDS             complement(126..449)
                     /locus_tag="WI428_RS24300"
                     /old_locus_tag="WI428_24300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000956000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_001677263.1"
                     /translation="MLTIRVSDEEHARLLERCEGKRLAEWMRRVCLGEPVARTGKLPTL
                     SPPLLRHLAAIGNNLNQTARKVNSGHWSSIDRVHVVAALMAIEGELRQLRQAVREQGGR
                     DDS"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            512..703
                     /locus_tag="WI428_RS24305"
                     /old_locus_tag="WI428_24305"
     CDS             512..703
                     /locus_tag="WI428_RS24305"
                     /old_locus_tag="WI428_24305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_000165986.1"
                     /translation="MTKQEKTALNMARFIRSQTLTLLEKLNELDADEQADICESLHDHA
                     DELYRSCLARFGDDGESN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            1373..1522
                     /locus_tag="WI428_RS24310"
                     /old_locus_tag="WI428_24310"
     CDS             1373..1522
                     /locus_tag="WI428_RS24310"
                     /old_locus_tag="WI428_24310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001326446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_032194431.1"
                     /translation="MHEPPVQPDRCALSGNYRLESNPERHVKTPLAAAIGNRLEELVLK
                     LCAG"
                     /name="hypothetical protein"
     gene            1714..2553
                     /locus_tag="WI428_RS24315"
                     /old_locus_tag="WI428_24315"
     CDS             1714..2553
                     /locus_tag="WI428_RS24315"
                     /old_locus_tag="WI428_24315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001354646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001354646.1"
                     /translation="MLTLFIFFVLLIAACFFCFAPPRRGYDRNEIIPYKIKLSINKYRL
                     YIYSSGKVRQYLLFLVILSLYYSIAEPFKSELIKNISYSLMAAFIFDTGLNFSKENITK
                     GVISTRWHNDLYSSFERMKAINKIYYPSNKEINTEGLSKAITSSLFNDDANSFAKRDFR
                     LMWDLSSEKYLSYKEIIIRKGDKLDAVCLRFINDDYKFLVNFNRDEEVFKYFPSIMQPS
                     LKTYRALSRLVNSIKDPSRFKFTTESLEMELLEYLELRNELFNDIEEVMGSYAQRAP"
                     /name="hypothetical protein"
     gene            complement(3241..3474)
                     /locus_tag="WI428_RS24320"
                     /old_locus_tag="WI428_24320"
     CDS             complement(3241..3474)
                     /locus_tag="WI428_RS24320"
                     /old_locus_tag="WI428_24320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_000137388.1"
                     /translation="MTELEGHLLNALEHLQQDYMRRLNEWESAFAELQKMHAVTQQNNA
                     ILNERVVNLSQQVQLLAGQVDRLSRLFITNNR"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(3481..4041)
                     /locus_tag="WI428_RS24325"
                     /old_locus_tag="WI428_24325"
     CDS             complement(3481..4041)
                     /locus_tag="WI428_RS24325"
                     /old_locus_tag="WI428_24325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000067488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_000067488.1"
                     /translation="MSNLLQMGTDFEKKLKERAASTENMLNSEFRKLEESVDKALSLNR
                     QKIRDAISEHTTSVKQQLDTLSTTVSTQLSTTEAELSRQQKNLLWQVIKGRVLFPALTA
                     LSVTGGIFLGCWGLIQWQESRIAKNILTIREQENTLAKLEAKTWGVTFVNGENGKFLVL
                     PDGVKGENTWTVGDKNAVRLVRE"
                     /name="MbeB family mobilization protein"
     Typing          complement(792..876)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="3.03e-37"
     Typing          887..1442
                     /name="rep_cluster_2350"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="93.907"
                     /coverage="99.0"
                     /evalue="0.0"
     Typing          complement(130..482)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="83.051"
                     /coverage="100.0"
                     /evalue="1e-57"
     Typing          complement(3144..4591)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="99.793"
                     /coverage="99.0"
                     /evalue="0.0"
ORIGIN
        1 catcaatgag ttcccggatt tcttccgggt taccccggag caccgttgcg ccttcgcggt
       61 tacgctcccg ccccagcagg taatcgaccg ggccacttcc accgcctttc cccctggcat
      121 gaaatttaac tatcatcccg tcccccctgt tccctgacag cctgccgcaa ctggcgcaat
      181 tcaccctcga tggccatcag agcggccacc acatgaaccc ggtcaatcga agaccagtgg
      241 ccgctgttca ccttccgggc tgtctggttc agattgttcc cgatggcagc cagatgccgc
      301 agcaatggcg gcgatagtgt cggcagtttt cctgtgcgcg caaccggctc ccccagacag
      361 acccgccgca tccattctgc cagtcgttta ccctcgcagc gttccagtaa ccgggcgtgc
      421 tcctcatcgc taacccgtat cgtgagcatc ttctcgcgtt tcatcggtat cattccccct
      481 aaaaaatccc ctattaagga gccttaagac catgaccaaa caggaaaaaa cagcccttaa
      541 catggcccgc tttatcagaa gccagacgct gaccctgctg gaaaaactca acgagctgga
      601 cgcggacgaa caggcagaca tctgcgaatc acttcacgac cacgccgacg aactctaccg
      661 tagttgcctc gcacgcttcg gcgatgacgg tgaaagcaac tgaaacatgc agctcccgga
      721 gacgttcaca gcttgcctgt gagcggatgc cgggagcaga caagcccgtc agggcgcgtc
      781 agcgggtttt agcgggtgtc ggggcgcagc cctgacccag tcacgtagcg atagcggagt
      841 gtatactggc ttaactatgt ggcatcagtg cggattataa gaaaagtgca ccatatgcgg
      901 tgtgaaatac cgcacagatg cgtaaggaga aaatgccgca tcaggcgctc ttccgcttcc
      961 tcgctcactg actcgctacg ctcggtcgtt cggctgcggc gagcggtatc agctcactca
     1021 aagacggtga tgcggttatc cacagaatca ggggataacg ccaaaagaaa catgtgagca
     1081 aaaggccagg aacaggaaga aggccgcgcc gctggcgttt ttccataggc tccgcccccc
     1141 tgacgagcat cacaaaaaca gatgctcaag tcagaggtgg cgaaacccga caggactata
     1201 aagataccag gcgtttcccc ctggaagctc cctcgtgcgc tctcctgttc cgaccctgcc
     1261 gcttaccgga tacctgtccg cctttctccc ttcgggaagc gtggcgcttt ctcatagctc
     1321 acgctgttgg tatctcggcc cggtgtaggt cgttcgctcc aagctgggct gtgtgcacga
     1381 accccccgtt cagcccgacc gctgcgcctt atccggtaac tatcgtcttg agtccaaccc
     1441 ggaaagacac gtaaaaacgc cactggcagc agccattggt aaccgtttag aggagttagt
     1501 cttgaagtta tgcgccggtt aaggctaaac tgaaaggaca gatttggtgg ctgtgctcct
     1561 ccaagccagt taccttggtt caaagagttg ctgctctgag aaccttcgaa aagccgcctt
     1621 gctgggcggt tttttcgttt acggacaaga ctaccttcag gatcgttaga tctcaagaca
     1681 atcatgcata gtgagcatac acaggagccg aacttgctta cactgttcat cttttttgtt
     1741 ttattaatag ctgcatgttt cttttgtttt gctccaccac gaagaggata tgacagaaat
     1801 gagatcattc catacaaaat aaaactatca ataaataaat atcgccttta catatactca
     1861 tcgggaaagg taagacaata ccttttattt ttagttattt tatcactgta ctactccata
     1921 gcggaaccat ttaagtctga gttaataaaa aacatatcat attcactgat ggctgcattt
     1981 atttttgata cagggcttaa ttttagcaag gagaatataa ctaaaggagt gatttcaaca
     2041 aggtggcata atgacctata ttcatcattt gagagaatga aagcaattaa taaaatttac
     2101 tacccatcca acaaagagat aaacacagaa ggtctatcca aagccatcac atcatctctt
     2161 ttcaatgatg acgcgaactc gttcgcaaag agagattttc gcttgatgtg ggacttatct
     2221 tctgaaaaat atctttccta taaagaaata ataataagaa aaggcgataa gcttgacgct
     2281 gtatgcttga gatttataaa tgatgactac aagtttttag ttaatttcaa cagagatgaa
     2341 gaggttttca aatactttcc atctataatg caaccttcac tcaaaacata tagagcgtta
     2401 tcaagactag taaactcaat caaagatcct tctagattta agttcacgac agagtcatta
     2461 gaaatggagt tactagaata cttagagtta agaaatgaat tattcaatga catagaagaa
     2521 gtaatgggta gctatgctca gagggcacca tagttcatga tagccctcga tagtacttac
     2581 ttatattttt agagaggttt aagtgtaagt agagggagta acacctggtt tttcagcatc
     2641 cactccaatg aatgctgaca ccgatacgcg ataattctct ttatcgtagc aaaatcatcc
     2701 tccagattgc ggttgagaat aggttcatgg tgcgcaatac gattgcgcag ttttctcacg
     2761 ggacttgtta gcagtaatgc ttccccccgg ggacaaacga cagagatata caacaaaggc
     2821 ccgcaattaa aatactccgt atttaccata acgtcgcatt gcgcgtaccg cttaaacgcg
     2881 ttcagcgcga tcacggcagc agacaggtaa aaacagcaac aaaccacccg aaaaactgcc
     2941 gcgatcgcgc ctggtaaatt ttaacctcat gcatagttat gcgcgaaact gaatgacgat
     3001 cagtttcgca cgttccagcc gtcgaacggg gcaaaatggg gaggtttgga tattgttaat
     3061 gctaatgtac gtacattaac attggcgcca tccgggtagg gcgtgccaca aactggctcg
     3121 atttcagggg gtaccccggt cacatcccca ttgacgggcc acgccagatc cgcgcttcgg
     3181 gttcctgctc ttcatgccag cgccgggcaa gctcctgcgc ctgacgctcc tgttcatccc
     3241 ttatctgttg ttcgtgataa ataaccgact caagcggtcg acttgtccgg ctaatagctg
     3301 cacctgctga ctcaagttca cgacacgctc gttcagtatc gcgttgttct gttgcgtaac
     3361 cgcgtgcatc ttctgcaatt ctgcgaaggc gctctcccac tcgttcagcc gccgcatata
     3421 gtcctgttgc aaatgctcta aggcgttcag caaatgccct tccagttccg tcatactcgt
     3481 ttactccctg accagcctca cggcgttctt gtcgcccacc gtccaggtgt tttccccttt
     3541 caccccgtcc ggcagcacca gaaatttccc gttctcgcca ttgacgaacg tcacccccca
     3601 ggtttttgcc tcgagtttcg ccagcgtgtt ttcctgctct ctgatggtca agatattttt
     3661 cgcaatcctg ctttcctgcc actgaatcag cccccagcac cccaggaaaa tgccgcccgt
     3721 gacgctgagc gcggtcagcg ccggaaacag tacccgccct ttgatcacct gccagagcag
     3781 gtttttctgc tgccgggaca gttcggcctc tgtggtgctg agctgcgtgc tcacggtggt
     3841 gctcagcgta tccagttgct gtttcacgga tgttgtatgt tcgctgatag cgtctctgat
     3901 tttctgcctg tttaagctca gtgccttgtc tacagactct tctagcttcc tgaactcgct
     3961 gttcagcatg ttctcggtag aagcggctcg ctctttcagt ttcttctcga agtccgttcc
     4021 catttgtaaa agattgctca tacagcgccc cctttagcct gagattccgc cccccctccg
     4081 ggtcggcaat actgatactg cttctggttg tcctcaccac ctcaaaacct gccgctgtga
     4141 gcgcctcagt gacatcctga cgcgttttta ttgctccggc acggtaaagc gcctcaagac
     4201 cccgtgtaat cgcttctgcg gcctcctgtt tcgcttttgg cagattattc ggtgtgacaa
     4261 gcgtccgtct gttctccggt gcgttcgggt cacgcagccc gtaatgatga ttaaccagcg
     4321 tctgccaggc atttatcctc ggcctgtccg cacggtcgta gtacggctgg aggcgcttac
     4381 cgctctgtag ttccatgttc ggaatgacaa aattcagttc gagccgcccc ttatcctggt
     4441 gttccaccca gagaatgctg tactggtttt tttcgagacc gggcataaga acacgctcaa
     4501 agctcgtcat cactctttcg cgttcacccg gcggtaactc cttctccgcg aacgacagaa
     4561 cgcctgacgt gtatttcttc gaaaatggcg tgg
//
