LOCUS       NZ_CP149331             2101 bp    DNA     circular CON 15-APR-2024
DEFINITION  Salmonella enterica subsp. enterica serovar Typhimurium strain
            Z1323SSL0026 plasmid pZ1323SSL0026-5, complete sequence.
ACCESSION   NZ_CP149331
VERSION     NZ_CP149331.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40439964
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Typhimurium (Salmonella
            typhimurium)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhimurium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2101)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Complete genome sequence of Salmonella enterica subsp. enterica
            serovar Typhimurium isolated from humans and pigs
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2101)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-MAR-2024) Division of biotechnology, Jeonbuk National
            University, kobongro, Iksan 54596, South Korea
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method              :: Unicycler v. v0.4.9
            Genome Representation        :: Full
            Expected Final Version       :: Yes
            Genome Coverage              :: 125X
            Sequencing Technology :: Illumina NovaSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI RefSeq
            Annotation Name              :: GCF_038097775.1-RS_2024_04_15
            Annotation Date              :: 04/15/2024 12:33:54
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision :: 6.7
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                :: 2
            CDSs (total)                 :: 2
            Genes (coding)               :: 2
            CDSs (with protein)          :: 2
            Genes (RNA)                  :: 0
            tRNAs                        :: 0
            ncRNAs                       :: 0
            Pseudo Genes (total)         :: 0
            CDSs (without protein)       :: 0
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP149331.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2101
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhimurium"
                     /mol_type="genomic DNA"
                     /strain="Z1323SSL0026"
                     /serovar="Typhimurium"
                     /host="Pig"
                     /sub_species="enterica"
                     /db_xref="taxon:90371"
                     /plasmid="pZ1323SSL0026-5"
                     /geo_loc_name="South Korea"
                     /collection_date="2023-03-24"
     gene            join(1991..2101,1..156)
                     /locus_tag="WI430_RS00005"
                     /old_locus_tag="WI430_25170"
     CDS             join(1991..2101,1..156)
                     /locus_tag="WI430_RS00005"
                     /old_locus_tag="WI430_25170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001024536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001024536.1"
                     /translation="MNINIEYLNGNKTIGLFFLRSEAVIPDRFKNLILLIDGLSFGTFG
                     FHPHEGFEDELILYIQKTNERVKTLFVKIDLNGIKFGFLRTHS"
                     /name="hypothetical protein"
     gene            1022..1987
                     /locus_tag="WI430_RS00010"
                     /old_locus_tag="WI430_25175"
     CDS             1022..1987
                     /locus_tag="WI430_RS00010"
                     /old_locus_tag="WI430_25175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012421200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_001287824.1"
                     /translation="MSEDKFLSDYSPRDAVWDTQRTLTDSVGGIYQTAAEFERYALRMA
                     SCSGLLRFGWSTIMETGETRLRLRSAQFCRVRHCPVCQWRRTLMWQARFYQALPKIVVD
                     YPSSRWLFLTLTVRNCEIGELGTVLTAMNAAFKRMEKRKELSPVQGWIRATEVTRGKDG
                     SAHPHFHCLLMVQPSWFKGKNYVKHERWVELWRDCLRVNYEPNIDIRAVKTKTGEVVAN
                     VAEQLQSAVAETLKYSVKPEDMANDPEWFLELTRQLHKRRFISTGGALKNVLQLDRETN
                     EDLVIADDVGDGTDDGKRTAFVWDSGKRRYKRAPEKDKSD"
                     /name="protein rep"
     Typing          1416..1647
                     /name="Col(BS512)"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.05e-118"
ORIGIN
        1 ggattaagtt ttggcacatt tggttttcat ccgcacgaag gttttgagga tgaattaatt
       61 ttatatattc agaaaacaaa cgagagggta aaaactcttt ttgtgaaaat agatttaaac
      121 ggtatcaagt ttggattttt aagaacgcat tcttagttct ggaaaagagc cagcggcagg
      181 ctgaggtgat aggtacgaga ttgcatgcaa tctctagtgc tctgtctatc ctgcattatc
      241 ctcagcatta tcctcagcat tatcctcagc cttgccaact cgacaccaat gcaggataga
      301 caatccgatg tcaaatgtta acactctgcg agtggtacat tttccccgga ttatcgtcct
      361 gagcctgccg ctggctctct ttctaccgcc tcgctttgct cgttgctcaa cgcctcacag
      421 acacggatta aaatccgcat ccgttcaccg ttttttaaag tccgttaaaa gcatgatgcc
      481 atctccgaga gttaatctcg tcaaatgcta aatcgtgggg gtcccctttg gggttccgat
      541 ttagtgattg acgacaccac cgattaaaaa acttatgagg ggtggatggt ttcacgaagt
      601 gaggccatcc acctgtaaga cagggttttg tttttattcc ctgttttggt gatcgggtgt
      661 gtggaaaagg ttggggtaag ccgttcgggg gtgcttgttt tgggggttta aaattgtggt
      721 tattttttgc gcaattctcg cgcgtgatcc ttgtatttat acttaaggga taaatggcgg
      781 atatgaaata gtggtttagc ccagtaatga cgaggctttg agtgggtttt gacaggtcaa
      841 agaaaatgga gcagaattga ggcgttttta atcggcgttg gggagtgcgt caacactccc
      901 caacatttcg aatgtgtcac ctcagcggca aactctggtg acatgtactg gctcgcaatg
      961 cacaggtacg tgatgaatat accacatcaa atcacagcct gcccagatcg gagcaggctt
     1021 aatgtcagaa gataaattcc tttcggacta cagcccccgt gatgcagttt gggataccca
     1081 gcgcacgctt accgattctg tcgggggtat ctaccagact gctgctgaat tcgagcgcta
     1141 tgcactccgt atggcctcct gtagcggttt gttacgtttt ggttggtcta ccatcatgga
     1201 aaccggagaa acgcgcctac ggcttcgtag tgcgcaattt tgccgtgtcc gtcattgccc
     1261 tgtctgccag tggagaagaa ccctcatgtg gcaagcccgt ttttatcagg ctctaccgaa
     1321 aatcgttgtg gattacccgt cttcccgatg gttgtttctg acgttaactg tcaggaactg
     1381 cgagataggt gaacttggaa cagtccttac agcaatgaat gcggcgttta agcgaatgga
     1441 aaagcgaaag gagctatcac ctgttcaggg gtggatcagg gctacggagg tgacgcgagg
     1501 taaggatggc agcgcacatc cgcattttca ctgtctgctg atggtgcaac cttcttggtt
     1561 taaagggaag aactacgtta agcacgaacg ttgggtagaa ctctggcgcg attgcttgcg
     1621 ggtgaactat gagccgaata tcgatattcg ggcagtaaaa actaagacag gtgaggttgt
     1681 ggccaacgtt gccgagcaac tgcaaagcgc ggttgctgaa acgctgaaat actccgttaa
     1741 accggaagat atggcaaacg atcctgagtg gtttcttgag ctgacgcggc agcttcacaa
     1801 gcgccgtttt atctcgaccg gtggggcgct aaaaaacgtc ctccagttgg atcgagaaac
     1861 caatgaggat cttgtcattg ccgacgatgt aggggatggc actgatgacg ggaagcggac
     1921 ggcgtttgtc tgggattcag gtaaacggcg ttacaaacgc gcccctgaga aggataaatc
     1981 ggattaacgt atgaatatta atattgaata cctgaatgga aataagacta ttggtttatt
     2041 ttttttaaga agtgaagcgg tgattcctga caggtttaaa aaccttattt tgcttattga
     2101 t
//
