LOCUS       NZ_CP149330             4197 bp    DNA     circular CON 15-APR-2024
DEFINITION  Salmonella enterica subsp. enterica serovar Typhimurium strain
            Z1323SSL0026 plasmid pZ1323SSL0026-4, complete sequence.
ACCESSION   NZ_CP149330
VERSION     NZ_CP149330.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40439964
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Typhimurium (Salmonella
            typhimurium)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhimurium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4197)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Complete genome sequence of Salmonella enterica subsp. enterica
            serovar Typhimurium isolated from humans and pigs
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4197)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-MAR-2024) Division of biotechnology, Jeonbuk National
            University, kobongro, Iksan 54596, South Korea
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method              :: Unicycler v. v0.4.9
            Genome Representation        :: Full
            Expected Final Version       :: Yes
            Genome Coverage              :: 125X
            Sequencing Technology :: Illumina NovaSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI RefSeq
            Annotation Name              :: GCF_038097765.1-RS_2024_04_15
            Annotation Date              :: 04/15/2024 12:35:59
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision :: 6.7
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                :: 4
            CDSs (total)                 :: 4
            Genes (coding)               :: 4
            CDSs (with protein)          :: 4
            Genes (RNA)                  :: 0
            tRNAs                        :: 0
            ncRNAs                       :: 0
            Pseudo Genes (total)         :: 0
            CDSs (without protein)       :: 0
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP149330.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4197
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhimurium"
                     /mol_type="genomic DNA"
                     /strain="Z1323SSL0026"
                     /serovar="Typhimurium"
                     /host="Pig"
                     /sub_species="enterica"
                     /db_xref="taxon:90371"
                     /plasmid="pZ1323SSL0026-4"
                     /geo_loc_name="South Korea"
                     /collection_date="2023-03-24"
     gene            complement(join(4182..4197,1..1124))
                     /gene="dcm"
                     /locus_tag="WI430_RS00005"
                     /old_locus_tag="WI430_25150"
     CDS             complement(join(4182..4197,1..1124))
                     /gene="dcm"
                     /locus_tag="WI430_RS00005"
                     /old_locus_tag="WI430_25150"
                     /EC_number="2.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000131511.1"
                     /GO_function="GO:0003886 - DNA
                     (cytosine-5-)-methyltransferase activity [Evidence IEA]"
                     /GO_process="GO:0006304 - DNA modification [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA (cytosine-5-)-methyltransferase"
                     /protein_id="WP_000131512.1"
                     /translation="MTDNIAATIKGKRERLHMTQKEFADALGLSKYGDRTIRRWERGET
                     KPTGAELKAVMDFPDTPPYPNNENGRYRMIDLFAGIGGTRLGFHQTNAVNVVFSSEWDK
                     FAQKTYHANYGDFPDGDITKIDEKDIPDHEILVGGFPCVAFSQAGLKKGFNDTRGTLFF
                     DIARIIKEKKPHAFLLENVKNLLGHDKGRTFSIIKNTLEELNYTVYYNIFAAKDFGVPQ
                     NRERIYIVGFNKEKVRNHEHFTFPTPLKTKTRVGDILEKSVDNKYTLSDALWNGHQRRK
                     LVNAAAGKGFGYGLFNENSPYTNTISARYYKDGSEILIEQKGSNPRKITPREASRLQGF
                     PSDFIIPVSDTQAYKQFGNSVAVPVINAIAEKIISTLDS"
                     /name="dcm"
     gene            1195..2151
                     /locus_tag="WI430_RS00010"
                     /old_locus_tag="WI430_25155"
     CDS             1195..2151
                     /locus_tag="WI430_RS00010"
                     /old_locus_tag="WI430_25155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014640333.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA];
                     GO:0009036 - type II site-specific deoxyribonuclease
                     activity [Evidence IEA]"
                     /GO_process="GO:0009307 - DNA restriction-modification
                     system [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II restriction endonuclease"
                     /protein_id="WP_223152166.1"
                     /translation="MKKLSSRYKRLFFMQRLSPGEFKTLISKERKSHFITPFALVHKTF
                     CDLGYDQKNSDYFLNNPSEYIIAMRKNCWKEFEPFEKEFTTRMLSYLIDEERIKDMSPY
                     DAIRDFTMEYPTHIYDLALSNTQSRRSRAGKEFESILELLMMGAGIPVDVQGAIGKSFF
                     QKNQIGKLVDLVMPGVVQYTSNKRNTMLISAKTTLRERWQEVPEEVNRTGIREMYLATL
                     DDSFSEETINILYEANVVVVTTIENKNFKYKNNNRVLTFEDMLQSAMELSRKWNNVSYT
                     DSEKEEIQQSILKQIEKYSDFPYVVNYYRNRLSALVD"
                     /name="type II restriction endonuclease"
     gene            complement(2343..2504)
                     /locus_tag="WI430_RS00015"
                     /old_locus_tag="WI430_25160"
     CDS             complement(2343..2504)
                     /locus_tag="WI430_RS00015"
                     /old_locus_tag="WI430_25160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001354639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_071596883.1"
                     /translation="MHEPPVQPDRCALSGNYRLESNPVRHALTPLAAATGNRISRARFI
                     QMLTEFLK"
                     /name="replication initiation protein"
     gene            complement(3169..3363)
                     /locus_tag="WI430_RS00020"
                     /old_locus_tag="WI430_25165"
     CDS             complement(3169..3363)
                     /locus_tag="WI430_RS00020"
                     /old_locus_tag="WI430_25165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001041627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_001041631.1"
                     /translation="MNKQQQTALNMARFIKSQSLTLLEKLDALDADEQAAMCERLHELA
                     EELQNSIQIRFEAESETGT"
                     /name="Rop family plasmid primer RNA-binding protein"
     Typing          3002..3086
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="3.03e-37"
     Typing          3400..3498
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="98.0"
                     /coverage="100.0"
                     /evalue="1.35e-41"
     Typing          3623..3878
                     /name="MOBF"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="96.899"
                     /coverage="89.0"
                     /evalue="2.61e-118"
     Typing          complement(2433..2978)
                     /name="rep_cluster_2350"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="93.989"
                     /coverage="99.0"
                     /evalue="0.0"
ORIGIN
        1 gatatgattt tttctgctat tgcattgata acagggactg cgactgaatt cccaaattgc
       61 ttataagcct gtgtatccga tacagggata ataaaatcac taggaaaccc ttgaagtctt
      121 gacgcttccc gcggagttat ttttcttggg ttacttcctt tttgctctat taatatttcg
      181 ctaccatctt tatagtacct cgcacttatg gtattagtat atgggctatt ttcattaaat
      241 aaaccatacc caaagccttt accggctgct gcatttacaa gtttcctgcg ttggtgtcca
      301 ttccagagcg catctgatag cgtatattta ttgtctacgc tcttttcaag aatatctcca
      361 actcttgttt ttgtttttaa tggggttgga aaagtaaaat gttcatgatt tcttactttt
      421 tctttattaa agcctacaat gtatatgcgt tctctatttt gtggaacacc aaagtctttt
      481 gcagcgaaga tattgtaata cacagtgtaa ttcaattctt caagtgtgtt ttttattatt
      541 gaaaaagttc tacctttatc atgtcctagc aagtttttta cattttcaag taaaaaagca
      601 tgaggttttt tttcctttat tatccttgct atatcaaaaa acaaagttcc tcttgtatca
      661 ttaaatcctt ttttgagccc tgcttgagag aatgctacgc aaggaaaccc accgacaaga
      721 atttcatgat caggaatatc tttttcatcg atttttgtta tgtccccatc agggaaatca
      781 ccataatttg catgatatgt cttttgagca aacttatccc attcgctgga aaaaacaaca
      841 tttacagcgt tagtttgatg aaatccaagt ctggttccac cgattccagc aaataaatcg
      901 atcatgcgat atctgccatt ctcgttgttt gggtaaggtg gtgtgtctgg aaagtccata
      961 actgctttta gttccgcccc agtaggtttt gtttccccgc gctcccatct tcttatggtt
     1021 ctgtctccat attttgaaag accaagggcg tctgcaaact ctttttgagt catatgaagt
     1081 ctttctcttt ttcctttgat tgttgctgcg atattatcag tcatgcatgt ctaccagagt
     1141 taagtgttgg ttttaggaca atttgtcctg ttttgattcc aattatgaac gtgcatgaaa
     1201 aaactttcaa gtagatataa aaggttattt tttatgcaaa gattgagtcc tggtgaattt
     1261 aaaactctaa tttctaaaga gagaaagtcg cattttatta cgccatttgc tttggttcat
     1321 aaaacatttt gtgatttagg gtatgatcaa aaaaatagtg attatttttt gaataatcca
     1381 agtgaatata taattgcaat gaggaaaaac tgttggaaag aatttgaacc atttgaaaaa
     1441 gaattcacaa caagaatgtt atcatatctt attgatgaag aaagaataaa agatatgagt
     1501 ccttatgatg ccattcgtga ttttacgatg gaatacccta cacacatata tgatttggca
     1561 ctgtctaaca ctcaatccag acgtagcagg gcaggaaaag agtttgagtc tattcttgag
     1621 ctattgatga tgggggcagg aattcctgtt gatgtgcagg gggctattgg gaagtcattt
     1681 tttcaaaaaa accaaatagg taaacttgta gatcttgtta tgccaggtgt agtccagtac
     1741 acatctaaca aaagaaatac aatgttgatt tccgctaaaa caacgctgag ggagcgatgg
     1801 caagaagtac ctgaagaggt taatagaaca ggaattagag aaatgtatct agctacacta
     1861 gatgattctt ttagcgagga gacaataaat atattatacg aggctaatgt ggtcgttgta
     1921 acgacgatag aaaataaaaa tttcaaatat aaaaataata atagggtgct aacctttgaa
     1981 gatatgctac agtcagcaat ggaattatca agaaagtgga ataatgtaag ttacacagac
     2041 tctgaaaaag aggaaattca acagtcaata ttaaaacaaa tagaaaaata tagtgatttc
     2101 ccttatgttg ttaattatta tagaaatagg cttagtgctc ttgttgacta aaaaactaaa
     2161 aggatctctt gagatccttt ttttctgcgc gtaatcttgg acctgtaaac gaaaaaacca
     2221 ccctggcagg tggttttttc gaaggttagc taatcctggc agattatcta accgaggtaa
     2281 tctggcttca gcagagcaca gataccaaat actgtccttc cagtgtagcc gtagttaggc
     2341 catcacttca agaactctgt aagcatctgg ataaatctcg ctctgctaat ccggttacca
     2401 gtggctgctg ccagtggcgt taaggcgtgt cttactgggt tggactcaag acgatagtta
     2461 ccggataagg cgcagcggtc gggctgaacg gggggttcgt gcacacagcc cagcttggag
     2521 cgaacgacct acaccgggcc gagataccaa cagcgtgagc tatgagaaag cgccacgctt
     2581 cccgaaggga gaaaggcgga caggtatccg gtaagcggca gggtcggaac aggagagcgc
     2641 acgagggagc ttccaggggg aaacgcctgg tatctttata gtcctgtcgg gtttcgccac
     2701 ccctgacttg agcgtcgatt tttgtgatgc tcgtcagggg ggcggagcct atggaaaaac
     2761 gccagcggcg cggccttttg ttgccctttg cctttttacg cacatgttct ttccggcctt
     2821 atcccctgat tctgtggata accgtatttc cgcctttgag tgagccggca ccgcttgccg
     2881 cagccgaacg accgagcgca gcgagtcagt gagcgaggaa gcggaagagc gcctgatgcg
     2941 gtatgttctc cttacgcatc tgtgcggcat ttcacacccg gcatggcgtg cttttcatac
     3001 aatccgcact gatgccgcat agttaagcca gtatacactc cgctatcgct acgtgactgg
     3061 gtcatggctg cgccccgaca cccgctaaaa ccccctgacg cgccctgacg ggcttgtctg
     3121 ctgacgaaaa cgcccacggg aaagccgtga ccgcctccgt cagcttcgtt atgttcctgt
     3181 ttcactttcg gcctcaaagc gaatctggat gctgttctgg agttcttctg cgagttcgtg
     3241 cagtcgttcg cacatggccg cctgttcgtc ggcatccaga gcatccagtt tttcaagcag
     3301 tgtcaggctc tggcttttga taaatcgcgc catattcagc gcagtttgtt gttgtttgtt
     3361 caccttccgt tgttctccgt cagttccggg tgtcgggggg accctgagca ggtggtaatt
     3421 gtaagacgtt gcgggcgacg gtattacaat tgcacatcct gtcctgtttc tttaggacgt
     3481 atcatggcac agcatatcaa ctgataaata atccctgtgc agtgcagccg ctgttgcata
     3541 aaatttcgct ctgcgtcgag tgtttcttaa tcaataattc cgctgatact ccggaaaaac
     3601 gcgagtctgt tctcatgcct gaaatgccca caccccacgc aaaaacaagt ttttgctgat
     3661 ttttctttat aaatagagag ttatgacaaa ttagttcttc ttgctctctt tgtgatattt
     3721 aaaaaagcgg tgtcggcgcg gtgttgtagc tgcgccaaca ccgcttttta ggggtggtac
     3781 tgactatttt cataaaaaac atcatcttat attaggggtg ctgctagcgg cgcggtgtgt
     3841 ttttttacag gacacccctg ggggcgctgc taggggtgtc tgttcagata tgtagcaatg
     3901 agtcagggat tcacgaactg aaaatgtccg aaaatgtgtc tcatgggcac tgtatgcgcc
     3961 caaaccgatc gtcattcact ttcatgcata gctatgcagt gagctgaaag cgatcctgac
     4021 gcatttttcc ggtttacccc ggggagaaca tctctttttg cggtgttcgc ggcagaatcg
     4081 ctttcagcgc gttttagcgg tgcgcgcaat gcgacgttat ggtaaatcca tatggggggg
     4141 ggaattggat tctgggccgc attgtgtcct tatgacttag tttatgaatc taaggtc
//
