LOCUS       NZ_CP149302             4593 bp    DNA     circular CON 15-APR-2024
DEFINITION  Salmonella enterica subsp. enterica serovar Typhimurium strain
            Z1323SSL0046 plasmid pZ1323SSL0046-4, complete sequence.
ACCESSION   NZ_CP149302
VERSION     NZ_CP149302.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40439972
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Typhimurium (Salmonella
            typhimurium)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhimurium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4593)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Complete genome sequence of Salmonella enterica subsp. enterica
            serovar Typhimurium isolated from humans and pigs
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4593)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-MAR-2024) Division of biotechnology, Jeonbuk National
            University, kobongro, Iksan 54596, South Korea
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.4.9
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 118X
            Sequencing Technology :: Illumina NovaSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038097685.1-RS_2024_04_15
            Annotation Date                   :: 04/15/2024 11:45:01
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 7
            CDSs (total)                      :: 7
            Genes (coding)                    :: 6
            CDSs (with protein)               :: 6
            Genes (RNA)                       :: 0
            tRNAs                             :: 0
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 1
            CDSs (without protein)            :: 1
            Pseudo Genes (ambiguous residues) :: 0 of 1
            Pseudo Genes (frameshifted)       :: 0 of 1
            Pseudo Genes (incomplete)         :: 1 of 1
            Pseudo Genes (internal stop)      :: 0 of 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP149302.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4593
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhimurium"
                     /mol_type="genomic DNA"
                     /strain="Z1323SSL0046"
                     /serovar="Typhimurium"
                     /host="Pig"
                     /sub_species="enterica"
                     /db_xref="taxon:90371"
                     /plasmid="pZ1323SSL0046-4"
                     /geo_loc_name="South Korea"
                     /collection_date="2023-04-06"
     gene            298..447
                     /locus_tag="WI424_RS00005"
                     /old_locus_tag="WI424_24265"
     CDS             298..447
                     /locus_tag="WI424_RS00005"
                     /old_locus_tag="WI424_24265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001326446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_032194431.1"
                     /translation="MHEPPVQPDRCALSGNYRLESNPERHVKTPLAAAIGNRLEELVLK
                     LCAG"
                     /name="hypothetical protein"
     gene            609..1478
                     /locus_tag="WI424_RS00010"
                     /old_locus_tag="WI424_24270"
     CDS             609..1478
                     /locus_tag="WI424_RS00010"
                     /old_locus_tag="WI424_24270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001354646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000555348.1"
                     /translation="MHSEHTQEPNLLTLFIFFVLLIAACFFCFAPPRRGYDRNEIIPYK
                     IKLSINKYRLYIYSSGKVRQYLLFLVILSLYYSIAEPFKSELIKNISYSLMAAFIFDTG
                     LNFSKENITKGVISTRWHNDLYSSFERMKAINKIYYPSNKEINTEGLSKAITSSLFNDD
                     ANSFAKRDFRLMWDLSSEKYLSYKEIIIRKGDKLDAVCLRFINDDYKFLVNFNRDEEVF
                     KYFPSIMQPSLKTYRALSRLVNSIKDPSRFKFTTESLEMELLEYLELRNELFNDIEEVM
                     GSYAQRAP"
                     /name="hypothetical protein"
     gene            complement(2166..2399)
                     /locus_tag="WI424_RS00015"
                     /old_locus_tag="WI424_24275"
     CDS             complement(2166..2399)
                     /locus_tag="WI424_RS00015"
                     /old_locus_tag="WI424_24275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_000137388.1"
                     /translation="MTELEGHLLNALEHLQQDYMRRLNEWESAFAELQKMHAVTQQNNA
                     ILNERVVNLSQQVQLLAGQVDRLSRLFITNNR"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(2406..2966)
                     /locus_tag="WI424_RS00020"
                     /old_locus_tag="WI424_24280"
     CDS             complement(2406..2966)
                     /locus_tag="WI424_RS00020"
                     /old_locus_tag="WI424_24280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000067488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_000067488.1"
                     /translation="MSNLLQMGTDFEKKLKERAASTENMLNSEFRKLEESVDKALSLNR
                     QKIRDAISEHTTSVKQQLDTLSTTVSTQLSTTEAELSRQQKNLLWQVIKGRVLFPALTA
                     LSVTGGIFLGCWGLIQWQESRIAKNILTIREQENTLAKLEAKTWGVTFVNGENGKFLVL
                     PDGVKGENTWTVGDKNAVRLVRE"
                     /name="MbeB family mobilization protein"
     gene            complement(<3001..3654)
                     /locus_tag="WI424_RS00025"
                     /old_locus_tag="WI424_24285"
                     /pseudo=""
     CDS             complement(<3001..3654)
                     /locus_tag="WI424_RS00025"
                     /old_locus_tag="WI424_24285"
                     /inference="COORDINATES: protein motif:HMM:NF015397.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            complement(3644..3967)
                     /locus_tag="WI424_RS00030"
                     /old_locus_tag="WI424_24290"
     CDS             complement(3644..3967)
                     /locus_tag="WI424_RS00030"
                     /old_locus_tag="WI424_24290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000956000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_001677263.1"
                     /translation="MLTIRVSDEEHARLLERCEGKRLAEWMRRVCLGEPVARTGKLPTL
                     SPPLLRHLAAIGNNLNQTARKVNSGHWSSIDRVHVVAALMAIEGELRQLRQAVREQGGR
                     DDS"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            4030..4221
                     /locus_tag="WI424_RS00035"
                     /old_locus_tag="WI424_24295"
     CDS             4030..4221
                     /locus_tag="WI424_RS00035"
                     /old_locus_tag="WI424_24295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_000165986.1"
                     /translation="MTKQEKTALNMARFIRSQTLTLLEKLNELDADEQADICESLHDHA
                     DELYRSCLARFGDDGESN"
                     /name="Rop family plasmid primer RNA-binding protein"
     Typing          complement(4310..4394)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="3.03e-37"
     Typing          complement(189..640)
                     /name="ColRNAI_rep_cluster_1857"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="83.0"
                     /evalue="0.0"
     Typing          4414..4592
                     /name="rep_cluster_2350"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="92.265"
                     /coverage="92.0"
                     /evalue="3.38e-65"
     Typing          complement(2069..3654)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 gagcaaaagg ccaggaacag gaagaaggcc gcgccgctgg cgtttttcca taggctccgc
       61 ccccctgacg agcatcacaa aaacagatgc tcaagtcaga ggtggcgaaa cccgacagga
      121 ctataaagat accaggcgtt tccccctgga agctccctcg tgcgctctcc tgttccgacc
      181 ctgccgctta ccggatacct gtccgccttt ctcccttcgg gaagcgtggc gctttctcat
      241 agctcacgct gttggtatct cggcccggtg taggtcgttc gctccaagct gggctgtgtg
      301 cacgaacccc ccgttcagcc cgaccgctgc gccttatccg gtaactatcg tcttgagtcc
      361 aacccggaaa gacacgtaaa aacgccactg gcagcagcca ttggtaaccg tttagaggag
      421 ttagtcttga agttatgcgc cggttaaggc taaactgaaa ggacagattt ggtggctgtg
      481 ctcctccaag ccagttacct tggttcaaag agttgctgct ctgagaacct tcgaaaagcc
      541 gccttgctgg gcggtttttt cgtttacgga caagactacc ttcaggatcg ttagatctca
      601 agacaatcat gcatagtgag catacacagg agccgaactt gcttacactg ttcatctttt
      661 ttgttttatt aatagctgca tgtttctttt gttttgctcc accacgaaga ggatatgaca
      721 gaaatgagat cattccatac aaaataaaac tatcaataaa taaatatcgc ctttacatat
      781 actcatcggg aaaggtaaga caataccttt tatttttagt tattttatca ctgtactact
      841 ccatagcgga accatttaag tctgagttaa taaaaaacat atcatattca ctgatggctg
      901 catttatttt tgatacaggg cttaatttta gcaaggagaa tataactaaa ggagtgattt
      961 caacaaggtg gcataatgac ctatattcat catttgagag aatgaaagca attaataaaa
     1021 tttactaccc atccaacaaa gagataaaca cagaaggtct atccaaagcc atcacatcat
     1081 ctcttttcaa tgatgacgcg aactcgttcg caaagagaga ttttcgcttg atgtgggact
     1141 tatcttctga aaaatatctt tcctataaag aaataataat aagaaaaggc gataagcttg
     1201 acgctgtatg cttgagattt ataaatgatg actacaagtt tttagttaat ttcaacagag
     1261 atgaagaggt tttcaaatac tttccatcta taatgcaacc ttcactcaaa acatatagag
     1321 cgttatcaag actagtaaac tcaatcaaag atccttctag atttaagttc acgacagagt
     1381 cattagaaat ggagttacta gaatacttag agttaagaaa tgaattattc aatgacatag
     1441 aagaagtaat gggtagctat gctcagaggg caccatagtt catgatagcc ctcgatagta
     1501 cttacttata tttttagaga ggtttaagtg taagtagagg gagtaacacc tggtttttca
     1561 gcatccactc caatgaatgc tgacaccgat acgcgataat tctctttatc gtagcaaaat
     1621 catcctccag attgcggttg agaataggtt catggtgcgc aatacgattg cgcagttttc
     1681 tcacgggact tgttagcagt aatgcttccc cccggggaca aacgacagag atatacaaca
     1741 aaggcccgca attaaaatac tccgtattta ccataacgtc gcattgcgcg taccgcttaa
     1801 acgcgttcag cgcgatcacg gcagcagaca ggtaaaaaca gcaacaaacc acccgaaaaa
     1861 ctgccgcgat cgcgcctggt aaattttaac ctcatgcata gttatgcgcg aaactgaatg
     1921 acgatcagtt tcgcacgttc cagccgtcga acggggcaaa atggggaggt ttggatattg
     1981 ttaatgctaa tgtacgtaca ttaacattgg cgccatccgg gtagggcgtg ccacaaactg
     2041 gctcgatttc agggggtacc ccggtcacat ccccattgac gggccacgcc agatccgcgc
     2101 ttcgggttcc tgctcttcat gccagcgccg ggcaagctcc tgcgcctgac gctcctgttc
     2161 atcccttatc tgttgttcgt gataaataac cgactcaagc ggtcgacttg tccggctaat
     2221 agctgcacct gctgactcaa gttcacgaca cgctcgttca gtatcgcgtt gttctgttgc
     2281 gtaaccgcgt gcatcttctg caattctgcg aaggcgctct cccactcgtt cagccgccgc
     2341 atatagtcct gttgcaaatg ctctaaggcg ttcagcaaat gcccttccag ttccgtcata
     2401 ctcgtttact ccctgaccag cctcacggcg ttcttgtcgc ccaccgtcca ggtgttttcc
     2461 cctttcaccc cgtccggcag caccagaaat ttcccgttct cgccattgac gaacgtcacc
     2521 ccccaggttt ttgcctcgag tttcgccagc gtgttttcct gctctctgat ggtcaagata
     2581 tttttcgcaa tcctgctttc ctgccactga atcagccccc agcaccccag gaaaatgccg
     2641 cccgtgacgc tgagcgcggt cagcgccgga aacagtaccc gccctttgat cacctgccag
     2701 agcaggtttt tctgctgccg ggacagttcg gcctctgtgg tgctgagctg cgtgctcacg
     2761 gtggtgctca gcgtatccag ttgctgtttc acggatgttg tatgttcgct gatagcgtct
     2821 ctgattttct gcctgtttaa gctcagtgcc ttgtctacag actcttctag cttcctgaac
     2881 tcgctgttca gcatgttctc ggtagaagcg gctcgctctt tcagtttctt ctcgaagtcc
     2941 gttcccattt gtaaaagatt gctcatacag cgcccccttt agcctgagat tccgcccccc
     3001 ctccgggtcg gcaatactga tactgcttct ggttgtcctc accacctcaa aacctgccgc
     3061 tgtgagcgcc tcagtgacat cctgacgcgt ttttattgct ccggcacggt aaagcgcctc
     3121 aagaccccgt gtaatcgctt ctgcggcctc ctgtttcgct tttggcagat tattcggtgt
     3181 gacaagcgtc cgtctgttct ccggtgcgtt cgggtcacgc agcccgtaat gatgattaac
     3241 cagcgtctgc caggcattta tcctcggcct gtccgcacgg tcgtagtacg gctggaggcg
     3301 cttaccgctc tgtagttcca tgttcggaat gacaaaattc agttcgagcc gccccttatc
     3361 ctggtgttcc acccagagaa tgctgtactg gtctttttcg agaccgggca taagaacacg
     3421 ctcaaagctc gtcatcactc tttcgcgttc acccggcggt aactccttct ccgcgaacga
     3481 cagaacgcct gacgtgtatt tcttcgaaaa tggcgtggca tcaatgagtt cccggatttc
     3541 ttccgggtta ccccggagca ccgttgcgcc ttcgcggtta cgctcccgcc ccagcaggta
     3601 atcgaccggg ccacttccac cgcctttccc cctggcatga aatttaacta tcatcccgtc
     3661 ccccctgttc cctgacagcc tgccgcaact ggcgcaattc accctcgatg gccatcagag
     3721 cggccaccac atgaacccgg tcaatcgaag accagtggcc gctgttcacc ttccgggctg
     3781 tctggttcag attgttcccg atggcagcca gatgccgcag caatggcggc gatagtgtcg
     3841 gcagttttcc tgtgcgcgca accggctccc ccagacagac ccgccgcatc cattctgcca
     3901 gtcgtttacc ctcgcagcgt tccagtaacc gggcgtgctc ctcatcgcta acccgtatcg
     3961 tgagcatctt ctcgcgtttc atcggtatca ttccccctaa aaaatcccct attaaggagc
     4021 cttaagacca tgaccaaaca ggaaaaaaca gcccttaaca tggcccgctt tatcagaagc
     4081 cagacgctga ccctgctgga aaaactcaac gagctggacg cggacgaaca ggcagacatc
     4141 tgcgaatcac ttcacgacca cgccgacgaa ctctaccgta gttgcctcgc acgcttcggc
     4201 gatgacggtg aaagcaactg aaacatgcag ctcccggaga cgttcacagc ttgcctgtga
     4261 gcggatgccg ggagcagaca agcccgtcag ggcgcgtcag cgggttttag cgggtgtcgg
     4321 ggcgcagccc tgacccagtc acgtagcgat agcggagtgt atactggctt aactatgtgg
     4381 catcagtgcg gattataaga aaagtgcacc atatgcggtg tgaaataccg cacagatgcg
     4441 taaggagaaa atgccgcatc aggcgctctt ccgcttcctc gctcactgac tcgctacgct
     4501 cggtcgttcg gctgcggcga gcggtatcag ctcactcaaa gacggtgatg cggttatcca
     4561 cagaatcagg ggataacgcc aaaagaaaca tgt
//
