LOCUS       NZ_CP149301             6863 bp    DNA     circular CON 15-APR-2024
DEFINITION  Salmonella enterica subsp. enterica serovar Typhimurium strain
            Z1323SSL0046 plasmid pZ1323SSL0046-3, complete sequence.
ACCESSION   NZ_CP149301
VERSION     NZ_CP149301.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40439972
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Typhimurium (Salmonella
            typhimurium)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhimurium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 6863)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Complete genome sequence of Salmonella enterica subsp. enterica
            serovar Typhimurium isolated from humans and pigs
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6863)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-MAR-2024) Division of biotechnology, Jeonbuk National
            University, kobongro, Iksan 54596, South Korea
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method              :: Unicycler v. v0.4.9
            Genome Representation        :: Full
            Expected Final Version       :: Yes
            Genome Coverage              :: 118X
            Sequencing Technology :: Illumina NovaSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI RefSeq
            Annotation Name              :: GCF_038097675.1-RS_2024_04_15
            Annotation Date              :: 04/15/2024 12:48:45
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision :: 6.7
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                :: 5
            CDSs (total)                 :: 5
            Genes (coding)               :: 5
            CDSs (with protein)          :: 5
            Genes (RNA)                  :: 0
            tRNAs                        :: 0
            ncRNAs                       :: 0
            Pseudo Genes (total)         :: 0
            CDSs (without protein)       :: 0
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP149301.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..6863
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhimurium"
                     /mol_type="genomic DNA"
                     /strain="Z1323SSL0046"
                     /serovar="Typhimurium"
                     /host="Pig"
                     /sub_species="enterica"
                     /db_xref="taxon:90371"
                     /plasmid="pZ1323SSL0046-3"
                     /geo_loc_name="South Korea"
                     /collection_date="2023-04-06"
     gene            complement(join(6736..6863,1..52))
                     /locus_tag="WI424_RS00005"
     CDS             complement(join(6736..6863,1..52))
                     /locus_tag="WI424_RS00005"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_049814157.1"
                     /translation="MISKANQQKISFAWGVGISGMRTDSRFSGVSAEFLIKKTSTQSEI
                     LCNSGCTAQGLFIS"
                     /name="hypothetical protein"
     gene            608..2590
                     /locus_tag="WI424_RS00010"
                     /old_locus_tag="WI424_24245"
     CDS             608..2590
                     /locus_tag="WI424_RS00010"
                     /old_locus_tag="WI424_24245"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015966094.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA];
                     GO:0008168 - methyltransferase activity [Evidence IEA];
                     GO:1904047 - S-adenosyl-L-methionine binding [Evidence
                     IEA]"
                     /GO_process="GO:0006306 - DNA methylation [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="WP_080069401.1"
                     /translation="MQTELIKELNKVLKAFPQFWNGEELQRSMVSDAISQKQPDLIKAL
                     VDNEKVRSVYGADIDGIFIFDFDKLCGLLKYKEYWANSFTKYRNKVGLTSEGKYLDYSS
                     DVVLDFPFKDCVLEGGMSKEDQGKSEVYYNEIIARDEIDNLFSPKVLKEVNRYSKEGVK
                     KERIFNRNDNLIIRGNNLIALHCIKNIYEKSVKLIYIDPPYNTDTDSFKYNDKFSHSTW
                     LTFMKNRLEVAKDLLCDDGLIAISIDDNELNYLASLADDIFGRKNRIAIFPRITKKGGK
                     SASIFAKNHDYILLYVRSLENKRMYAVSHDDDNFKYKDEYFAERGSYKLNQTLDYDSLQ
                     YSKSLDYIIEINGEKYYPGGDENLFNDRMNGKHNRADWAWRWSRKLFDFGFENGFIEIR
                     NGGQRPRIYTKTYQNAKISKDGNDYVITYFDRTKPLSTLEFTENKYSNDNATKHISSLL
                     GKNIFDYTKPETLLAKLIEITSTKNDLILDFNLGSGTTAAVAHKMGRRYIGIEQMEYIN
                     DITVPRLKKVIEGEQGGISKDVNWQGGGSFVYAELMELNAYFVHEIQKAQSTEELEKLF
                     TMMKTEAHLNYQVELENVLSAEYEVDGIFRKVAFSELELHEQKQLLIEILDKNKLYVNV
                     SDMEDSELSISESDKAFTRSFYGME"
                     /name="site-specific DNA-methyltransferase"
     gene            2595..5231
                     /locus_tag="WI424_RS00015"
                     /old_locus_tag="WI424_24250"
     CDS             2595..5231
                     /locus_tag="WI424_RS00015"
                     /old_locus_tag="WI424_24250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012443154.1"
                     /GO_function="GO:0005524 - ATP binding [Evidence IEA];
                     GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 -
                     hydrolase activity [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="WP_088365282.1"
                     /translation="MAKKPKSVGSEKLLFNRLKQFDEPGLFHDNYQTPDYIQENLKDAL
                     RPYQHGALRYLHYTQRKRDDALLHYRHLLFHMATGAGKTMVMAGTILYLFKELGYQNFI
                     FFVHTDAIIQKTRENLLNPQSPKYLFSQELEIDGEKITIEPIETFPSIPERNTIYLKLS
                     TIHKMHDELNSYRENSITYEDLKEIPLVLLGDEAHHFNAGTKARGKSKTSPENEEQTWE
                     RTIENILNLRPDNRLFEFTATIDLANKDIGQKYRGKVVYQYDLKQFMSDGYSKKVMLLE
                     ANQNDSDKMLDAVLLSQYRKLTAADHGITGFKPVILFKSNKIAISKAKQEEFSQLIAAM
                     TPESVRRHLANKKLQLSSDTSIWHKVIQRYANSDLVTVTGQIQEDFNDFNLLNVNKSDL
                     LEENPVLLNTLEEVDNPVRAVFAVAKVNEGWDVLNLYDIVRISEQASSSKTSTDSEAQL
                     IGRGARYYPFIYDGQRSFTRRFDNSTKDLSVLEQLHYHTINEPAYIKTLHASLEQADID
                     VHQDGGGTIEHARLKEDFKKSAVYQAGKLYFNEVEEIESSSRNWETYSLETRFEIPYQT
                     VCEESLDNLTGTKTGITKPELLVLDERFYRKAMQRISFYALDNLQRFFPKLTGIREFIR
                     SDAYLGKLKITVIVPQSLDFTTVPAKDKLHLLETVLLRISENVRRNDQKVKGTYRFISQ
                     PVKEVIKDYSLHIDPSVVINQKITAVPTIGKKWYVYDNAILNQLEHRLIKTLEAFMPKL
                     KARYDDIYVLRNDEQSTRFKLTEFGGVRGFMPDFIMILTRHSDNTYWQVFLEPKGDDRL
                     LDDAWKERMLETLNDRERIVIDENEHVRLVGIKFFANSQMDVFVSDMQNKLNDGESLET
                     SSLSLPL"
                     /name="DEAD/DEAH box helicase family protein"
     gene            complement(5629..5742)
                     /locus_tag="WI424_RS00020"
                     /old_locus_tag="WI424_24255"
     CDS             complement(5629..5742)
                     /locus_tag="WI424_RS00020"
                     /old_locus_tag="WI424_24255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_072071404.1"
                     /translation="MHEPPVQPDRCALSGNYRLESNPVRHDLLPLAAATGN"
                     /name="replication initiation protein"
     gene            complement(6412..6603)
                     /locus_tag="WI424_RS00025"
                     /old_locus_tag="WI424_24260"
     CDS             complement(6412..6603)
                     /locus_tag="WI424_RS00025"
                     /old_locus_tag="WI424_24260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_048228005.1"
                     /translation="MNKQQQTALNMARFIKSQTLTLLEKLNELDADEQADICESLHDHA
                     DELYRSCLARFSDDGENL"
                     /name="Rop family plasmid primer RNA-binding protein"
     Typing          6238..6318
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="4.73e-35"
     Typing          6640..6737
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="97.0"
                     /coverage="100.0"
                     /evalue="2.25e-39"
     Typing          complement(5671..6218)
                     /name="rep_cluster_2350"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="93.128"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 tgcccacacc ccacgcaaaa ctaatttttt gctgatttgc ttttgaaatc atgttgttat
       61 ggtttcaaaa atgtattttc tttttcagat ttatgcaaaa gcacgtcgtt gacgacccta
      121 tggcgacgct atggcgaccc tacttagggt cagtactgac aatctttata aaaaacagtt
      181 aattaaggta tgggcgtccc tagggacgcg tcgcattttt ttacaggaca cccctagcag
      241 cgcccctagg ggtgtctgct cagatatgcc tggaattcac gaactgaaaa tgtctgaaaa
      301 tgtgccttat tggcaccgaa tgcactcaaa ccgatcgtca ttcactttca tgcatagcta
      361 tgcatcgagc tgaaaacgat cctgacgcat ttttctggtt ttcactggta aaacatctct
      421 ttttgcggtg tttgcgtcag aatcgcgttc agcgcgtttt agtggtgcgc gcaagagcgt
      481 ttatgttaaa taccacccat tctgatgcat ttccccgcaa ctgcatccaa ctcatagctg
      541 tcgggttcca gcaccgaacg ctatacctta caatcattcc aatatttaac agtcataagg
      601 ccatgacatg cagaccgaat taataaaaga acttaacaag gttttaaaag cattcccgca
      661 attctggaac ggagaggaat tacaacgttc aatggtgagt gacgctatca gtcaaaagca
      721 gccagacctt atcaaggcat tggtcgataa tgaaaaagtc cgctctgttt atggtgcgga
      781 tattgatggc atttttatct ttgactttga caaattatgt ggtcttctaa aatacaaaga
      841 atattgggct aatagcttca ctaaataccg gaacaaagtg ggattaacta gcgaaggtaa
      901 ataccttgat tacagttctg atgtggtgct ggattttcct ttcaaggatt gtgttcttga
      961 aggcggtatg tcgaaagaag atcaaggaaa atcagaggtt tactataatg aaatcatcgc
     1021 acgagatgaa atagataatt tgttctcacc gaaagttctc aaagaagtaa atcgttactc
     1081 taaagaagga gtaaaaaaag aaagaatatt taaccgtaat gataatttaa ttatcagagg
     1141 aaataaccta attgcgttgc actgtataaa aaatatatac gagaagtcag ttaaattaat
     1201 ttatatagat ccaccatata atactgatac agatagcttt aaatataatg ataaatttag
     1261 tcactctacg tggctgactt tcatgaagaa cagacttgaa gttgcaaaag atttgttgtg
     1321 cgatgacggg ttaattgcaa ttagtattga tgataatgaa ttaaattatt tggcctcgtt
     1381 ggctgatgat atttttggcc gaaaaaatag gattgctata ttcccaagaa taacaaagaa
     1441 aggagggaaa tccgccagca ttttcgcaaa gaatcatgat tacatactgc tttatgttag
     1501 aagtttagaa aacaagcgta tgtatgcagt ttcgcacgac gacgataatt tcaaatataa
     1561 agatgagtac tttgctgaga gaggaagcta caaactcaac caaaccttgg attatgatag
     1621 ccttcaatac agcaaatcac ttgattatat aatagaaatc aatggtgaga aatattaccc
     1681 aggtggtgat gaaaatttat ttaatgatag aatgaatggc aagcataaca gggcggactg
     1741 ggcttggaga tggagtagga aattattcga ttttgggttt gaaaatgggt ttattgaaat
     1801 aagaaatggc ggccaaaggc caaggatata tacaaaaaca tatcaaaatg caaagatatc
     1861 aaaggacgga aatgattatg tcataaccta ctttgataga acaaagccat tgtcaacact
     1921 tgagtttact gaaaacaagt attctaacga caatgcgaca aaacacatta gctccctctt
     1981 agggaaaaat atatttgatt atacaaaacc agaaacccta ttggctaagc taatcgaaat
     2041 aacatctact aaaaatgacc taattctaga ctttaatctt ggtagtggaa ctacagctgc
     2101 tgttgctcac aaaatggggc gtcgctatat cggtattgag cagatggagt acatcaacga
     2161 cattacggta cctcgcctga aaaaagtcat cgaaggtgaa caggggggga tctcaaaaga
     2221 cgttaactgg caggggggag gcagctttgt ctacgcagaa ttgatggagc tgaacgccta
     2281 tttcgtgcat gaaattcaga aagcgcagtc cacggaagaa ctcgaaaaac tctttaccat
     2341 gatgaaaaca gaggcccatc tcaactatca ggtagagctg gaaaatgtgc tgtccgctga
     2401 gtacgaagtg gatggcatct tccgtaaggt agctttcagt gaactggaac tgcatgagca
     2461 gaagcagctt ctgattgaaa tcctcgataa aaataaactc tacgtgaatg tctctgatat
     2521 ggaggacagc gaactgagca tttcggagag cgataaagcc tttacccgca gcttctacgg
     2581 aatggagtga cggcatggcg aagaaaccga agtcagtcgg cagtgagaag ctactgttta
     2641 acaggctgaa gcagttcgat gaaccaggac tgttccacga taactatcag acgccggact
     2701 atattcagga aaacctgaaa gatgccctgc gcccctatca gcatggtgca ctgcgttacc
     2761 tgcattacac gcaacgtaaa cgggatgatg cgctgctgca ttatcgccac ctgctgtttc
     2821 acatggcaac cggtgcaggg aaaacgatgg tgatggcagg aacgatactt tatctgttta
     2881 aagagttagg gtatcagaac ttcattttct tcgtgcatac agacgcgatt atccagaaaa
     2941 cgcgagagaa cttgcttaat ccgcaatcgc cgaagtacct gttcagtcag gagctggaaa
     3001 tcgacgggga aaaaatcacc atcgaaccga tagaaacatt cccgtccata ccggaacgta
     3061 acacgattta cctcaagctc tctactatcc ataagatgca cgacgagctg aacagctatc
     3121 gtgagaacag catcacctac gaggatttaa aagaaatccc ccttgtgctg cttggtgacg
     3181 aggcacatca tttcaacgcc ggtactaaag ctagaggcaa gtcgaaaacc tcaccggaga
     3241 acgaggagca gacctgggaa cgcacgattg agaacatcct caacctgcga ccggataacc
     3301 gcctgttcga gttcaccgcc accattgatc ttgcgaacaa agatatcggg cagaaatacc
     3361 gtggtaaggt ggtgtatcag tatgacctga aacagttcat gtcagacggt tactcgaaga
     3421 aagtcatgct gctggaagcc aaccagaatg acagcgacaa gatgcttgat gcggtacttt
     3481 taagccagta ccgtaaactg acggcagcag atcacggcat caccggcttc aaaccggtca
     3541 ttctgttcaa gtcgaataag attgcgatat caaaggcgaa gcaggaggag ttttcgcaac
     3601 tgatagccgc catgacacct gagagcgtca gacgtcatct agctaacaaa aaactccagc
     3661 tcagctctga caccagtatc tggcataaag tgattcagcg ttacgctaac agtgatttag
     3721 tgacggtgac tgggcaaatt caggaggact ttaacgactt taacctgctg aacgtcaaca
     3781 agtcagatct gctggaagag aatcccgtcc tgctgaatac actagaagaa gtcgataatc
     3841 cggtgagagc cgtctttgcc gtcgcgaagg tgaatgaagg ctgggacgtt ctcaacctct
     3901 acgatattgt ccgcatcagc gagcaggcga gcagcagcaa aaccagcacg gacagcgaag
     3961 cgcagcttat cgggcgaggc gcgcgttact acccgttcat ttatgacggt caacgaagct
     4021 tcacccgccg ttttgataac agtacgaagg atttgagcgt actggagcaa ctgcactatc
     4081 acaccatcaa tgaaccggcg tacatcaaaa cactgcatgc ctctttggag caggcggaca
     4141 ttgatgtgca tcaggatggc ggcggtacga ttgaacacgc cagactgaaa gaagatttta
     4201 aaaagtccgc cgtgtatcag gcgggtaagc tgtacttcaa cgaagtggag gagattgaga
     4261 gcagcagcag aaactgggaa acctactcgc tggaaacacg ctttgagata ccgtatcaga
     4321 ccgtctgcga ggagtcgctg gacaacctga caggcacaaa gactggaatc acaaaaccgg
     4381 aactactggt actggacgag cgtttttacc gcaaggcgat gcaaaggatc agcttttacg
     4441 cacttgataa cctgcagcgt ttcttcccga aactgacagg catccgtgag ttcatccgca
     4501 gtgacgccta tcttggtaag ctgaaaatta cagtcatcgt accgcagtca ctggatttca
     4561 ccaccgtacc ggcaaaagat aagctgcacc tactggaaac cgttctgctg cgtatctcag
     4621 agaacgttcg ccgcaatgat cagaaggtaa aaggcacgta ccgctttatc agccagccgg
     4681 tgaaagaggt tattaaagat tacagtttgc acattgaccc gtcggtagtt attaatcaga
     4741 aaatcactgc tgtacccacc attggtaaaa aatggtacgt gtacgataat gcgatactga
     4801 atcagcttga gcatcgccta attaaaacgc tggaagcatt catgccgaag ctaaaagcgc
     4861 gttatgacga tatttacgta ctgcgtaacg acgagcagtc aacgcgcttt aagctcacgg
     4921 agttcggcgg cgtgcgcggg tttatgccag atttcatcat gatactgacg cgccattcgg
     4981 acaacactta ctggcaggtg ttccttgaac cgaaggggga tgatcgtttg ctggatgacg
     5041 catggaaaga acggatgctc gaaaccctga atgataggga gcgcattgta attgatgaaa
     5101 atgagcacgt cagactggtt gggattaaat tctttgccaa cagccagatg gacgtttttg
     5161 tcagcgacat gcagaacaag ctgaatgatg gagaatcgct cgaaacctcc tcgctttccc
     5221 taccactgta aatcacgaca ataaataacg gagcattacg ctccgttatt ttattgttat
     5281 ccctaaccac ctccccggga gttgatgatt gctcctgtaa tggttgcatt gtttgttctt
     5341 gctgttgcga atcattagtt ttgaattgtg gttaaaaacc gttcgctatg tttatgccta
     5401 gggggatgag ggggaaaaga ttcaaggatc ctcttgtgat cctttttttc tgcgcgtaat
     5461 ctgctgcctg taaacgaaaa aaccaccctg gcaggtggtt tttcgaaggt tagctaatcc
     5521 tggcagatta tctaaccggg taactggctt ggaggagcgc agtcaccaaa atctgttctt
     5581 tcagtttagc cttaacaggt gcataacttc aagacaaact cctctaaatc agttaccagt
     5641 ggctgctgcc agtggcaata agtcgtgtct taccgggttg gactcaagac gatagttacc
     5701 ggataaggcg cagcggtcgg gctgaacggg gggttcgtgc acacagccca gcttggagcg
     5761 aacgacctac accgaactga gataccaaca gcgtgagcta tgagaaagcg ccacgcttcc
     5821 cgaagggaga aaggcggaca ggtatccggt aatcggcagg gtcggaacag gagagcgcac
     5881 gagggagcca ccagggggaa actcctggta tctttaagtc ctgtcgggtt tcgccacctc
     5941 tgacttgagc gtcgattttt gtgatgctcg tcaggggggc ggagcctatg gaaaaacgcc
     6001 atcggcgcgg ccttttcctg gttcttgttt tttgctcaca tgctcctttt ggctttatcc
     6061 cctgattctg tggatcaccg cattaccgtt tttgagtggg ctgataccgc tcgccgcagc
     6121 cgaacggccg agcgtagcga gtcagtgagc gaggaagcgg aagagtgcct gaacaggcat
     6181 gttctcctta cgcatctatg cgatatttca caccgcatat gccgctgttt tcttacaatc
     6241 gcactgattc cgcacagtta agccagtata cactccgcta tcgctacgtg actgggtcat
     6301 ggctgcgccc cgacacccgc aaggtccacg gcctgacgcg ccctgacggg cttgtctgct
     6361 cccggcatcc gctcacaggc aagctgtggc cgtctccggg agctgtatgt gtcagaggtt
     6421 ttcaccatca tcactgaagc gagcgaggca actgcggtag agttcgtcgg cgtggtcgtg
     6481 aagtgattcg cagatgtccg cctgttcgtc cgcgtccagc tcgttgagtt tttctagcag
     6541 ggttagcgtc tggcttttga taaatcgcgc catattcagc gcagtttgtt gctgtttgtt
     6601 caccttcggt tgttctccgt cagtaccggg tgtcgggtgg accctgacca ggtggtaatt
     6661 gtaagacgtt gcgcgcgacg gtattacaat tgcacatcct gtcctgtttt ttaggaggta
     6721 tcatggcaca gcatatcaac tgataaataa tccctgtgct gtacagccgc tgttgcataa
     6781 aatttcgctc tgcgtcgagg ttttttttat caaaaattcc gcagataccc cggaaaaacg
     6841 cgagtctgtt ctcatgcctg aaa
//
