LOCUS       NZ_CP149293             5310 bp    DNA     circular CON 15-APR-2024
DEFINITION  Salmonella enterica subsp. enterica serovar Typhimurium strain
            Z1323SSL0073 plasmid pZ1322SSL0073-3, complete sequence.
ACCESSION   NZ_CP149293
VERSION     NZ_CP149293.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40439975
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Typhimurium (Salmonella
            typhimurium)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhimurium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 5310)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Complete genome sequence of Salmonella enterica subsp. enterica
            serovar Typhimurium isolated from humans and pigs
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5310)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-MAR-2024) Division of biotechnology, Jeonbuk National
            University, kobongro, Iksan 54596, South Korea
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.4.9
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 96X
            Sequencing Technology :: Illumina NovaSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038097655.1-RS_2024_04_15
            Annotation Date                   :: 04/15/2024 12:32:42
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 8
            CDSs (total)                      :: 8
            Genes (coding)                    :: 5
            CDSs (with protein)               :: 5
            Genes (RNA)                       :: 0
            tRNAs                             :: 0
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP149293.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..5310
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhimurium"
                     /mol_type="genomic DNA"
                     /strain="Z1323SSL0073"
                     /serovar="Typhimurium"
                     /host="Pig"
                     /sub_species="enterica"
                     /db_xref="taxon:90371"
                     /plasmid="pZ1322SSL0073-3"
                     /geo_loc_name="South Korea"
                     /collection_date="2023-04-10"
     gene            complement(153..344)
                     /locus_tag="WI414_RS00005"
                     /old_locus_tag="WI414_25055"
     CDS             complement(153..344)
                     /locus_tag="WI414_RS00005"
                     /old_locus_tag="WI414_25055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_000165975.1"
                     /translation="MTKQEKTALNMARFIRGQTLTLLEKLNELDADEQADICESLHDHA
                     DELYRSCLARFGDDGENR"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            409..732
                     /locus_tag="WI414_RS00010"
                     /old_locus_tag="WI414_25060"
     CDS             409..732
                     /locus_tag="WI414_RS00010"
                     /old_locus_tag="WI414_25060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000956000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_000955999.1"
                     /translation="MLTIRVTDDEHARLLERCEGKQLAVWMRRVCLGEPVARSGKLPTL
                     APPLLRQLAAIGNNLNQTARKVNSGQWSSGDRVQVVAALMAIGDELRRLRLAVREQGAR
                     DDS"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            941..>1372
                     /locus_tag="WI414_RS00015"
                     /old_locus_tag="WI414_25065"
                     /pseudo=""
     CDS             941..>1372
                     /locus_tag="WI414_RS00015"
                     /old_locus_tag="WI414_25065"
                     /inference="COORDINATES: protein motif:HMM:NF015397.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            1410..1940
                     /locus_tag="WI414_RS00020"
                     /old_locus_tag="WI414_25070"
     CDS             1410..1940
                     /locus_tag="WI414_RS00020"
                     /old_locus_tag="WI414_25070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001673158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_206353804.1"
                     /translation="MSNLLQTGAEFEKKLKERAESTEKMLNDEFRKLEESVNRELTSNE
                     SLIRNAINDHTTALKELLERYQKTTVDTMDVHWKTVLKMSVKRWLWLIIVSVLMFATTG
                     SLLWYQGMKINANMNILREQKESLEKLNAKTWGVRYHEDSNGRFLVLPKGMKAETNWTK
                     DNGKLNAVRLVQE"
                     /name="MbeB family mobilization protein"
     gene            1947..2180
                     /locus_tag="WI414_RS00025"
                     /old_locus_tag="WI414_25075"
     CDS             1947..2180
                     /locus_tag="WI414_RS00025"
                     /old_locus_tag="WI414_25075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_000137437.1"
                     /translation="MTELERHLLNALEQLQQDYMQRLNEWENAFVELQKMFSLTQRDNA
                     MLNGRVMQLSQQVQHLSERTERLSQLYSENRR"
                     /name="MbeD family mobilization/exclusion protein"
     gene            <2940..>3035
                     /locus_tag="WI414_RS00030"
                     /old_locus_tag="WI414_25080"
                     /pseudo=""
     CDS             <2940..>3035
                     /locus_tag="WI414_RS00030"
                     /old_locus_tag="WI414_25080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013356662.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter substrate-binding
                     protein"
                     /name="amino acid ABC transporter substrate-binding
                     protein"
     gene            3181..3996
                     /locus_tag="WI414_RS00035"
                     /old_locus_tag="WI414_25085"
     CDS             3181..3996
                     /locus_tag="WI414_RS00035"
                     /old_locus_tag="WI414_25085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032492145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside O-phosphotransferase APH(3')-Ia"
                     /protein_id="WP_000018330.1"
                     /translation="MSHIQRETSCSRQRLNSNLDADLYGYKWARDNVGQSGATIYRLYG
                     KPDAPELFLKHGKGSVANDVTDEMVRLNWLTEFMPLPTIKHFIRTPDDAWLLTTAIPGK
                     TAFQVLEEYPDSGENIVDALAAFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDA
                     SDFDDERNGWPVEQVWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGI
                     ADRYQDLAILWNCLGEFSPSLQKRLFQKYGIDNPDMNKLQFHLMLDEFF"
                     /name="aminoglycoside O-phosphotransferase APH(3')-Ia"
     gene            complement(<4006..>4278)
                     /locus_tag="WI414_RS00040"
                     /old_locus_tag="WI414_25090"
                     /pseudo=""
     CDS             complement(<4006..>4278)
                     /locus_tag="WI414_RS00040"
                     /old_locus_tag="WI414_25090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_021138877.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /name="hypothetical protein"
     ARG             3182..3993
                     /name="aph(3')-Ia"
                     /gene="aph(3')-Ia"
                     /gene_name="aminoglycoside O-phosphotransferase APH(3')-Ia"
                     /tool="amrfinderplus"
                     /drug_class="AMINOGLYCOSIDE"
                     /identity="100.0"
                     /coverage="100.0"
     Typing          4644..4831
                     /name="rep_cluster_2401"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="4.63e-94"
     Typing          723..2284
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 aagccagtat acactccgct atcgctacgt gactgggtca gggcttcgcc ccgacacccc
       61 aaaggtcaac ggcctgacgc gccctggcgg gcttgtctgc tcccggcatc cgctcacaga
      121 caagctgtga ccgtctccgg gagctgcatg tgtcagcggt tttcaccgtc atccccgaag
      181 cgtgcgaggc aactgcggta aagctcatcg gcgtggtcgt gaagcgattc acagatgtct
      241 gcctgttcat ccgcgtccag ttcgttgagc ttctccagca gcgttaatgt ctggcctctg
      301 atgaagcggg ccatgttaag ggcggttttt tcctgtttgg tcactgatgc ctccgtgtaa
      361 gggggggttc tgttcatggg ggtaatgata ccgatgaaac gcgagaggat gctcacgata
      421 cgggttactg atgatgaaca tgcccggtta ctggaacgct gtgagggtaa acaactggcg
      481 gtatggatgc ggcgggtctg cctgggtgag ccggttgccc gttccgggaa gctgccgaca
      541 ctggcaccgc cgttactgcg tcagctggcc gccatcggga ataaccttaa ccagacagcg
      601 aggaaggtga acagcgggca gtggtcttcc ggtgaccggg ttcaggtggt ggccgcactg
      661 atggccatcg gggatgagct gcgccggctg cgtctggcgg tcagggaaca gggggcgcgg
      721 gatgatagtt aagtttcatg ccaggggaaa aggtggtggc agtggtccgg ttgattacct
      781 gctgggaagg gagcgtaacc gggaaggggc aacggtgctt caggggaatc cggaagaggt
      841 ccgggaactc atcgatgcca cgccatttgc gaagaaatac acgtcaggtg ttctgtcgtt
      901 cgcggagaag gagctgccgc ctggagggcg tgaaaaagtg atggcgagct ttgagcgtgt
      961 actgatgccc ggtctcgaga aaaatcagta cagcatcctg tgggtggagc accaggacaa
     1021 gggacggctt gagctgaatt ttgtcattcc gaacatggag ctacagaccg gaaaacgcct
     1081 ccagccgtac tacgaccggg cagacaggcc gagaattgat gcctggcaga cgctggtgaa
     1141 tcaccattac ggtctgcatg accccaacgc cccggagaac cgccggacgc tgacccttcc
     1201 tgataacctg ccggaaacga aacaggcgct tgctgagggc gtcacacgcg ggatagacgc
     1261 gctttaccat gccggagaga taaaaggccg tcaggatgtg attcaggcgc tcacagaggc
     1321 ggggcttgaa gtggtcaggg tgacgcgaag cagtatcagc attgcagacc cgaacggcgg
     1381 gaggaatatc agactgaaag gagcgtttta tgagcaatct tttacagacg ggcgcggagt
     1441 tcgagaaaaa gctgaaagag agagccgaat ctacagagaa aatgctgaac gacgagttca
     1501 ggaagctcga agaatctgta aacagggaac tgacctcaaa cgaatcttta atcaggaacg
     1561 ctatcaacga ccatacaaca gccctgaaag aactgctgga gaggtatcag aaaacgaccg
     1621 tcgatacgat ggacgtgcac tggaaaaccg tactgaaaat gagcgtgaaa cgctggctgt
     1681 ggctgattat cgtctcagta ctgatgtttg ccacgaccgg gagtctgctg tggtaccagg
     1741 gcatgaagat aaacgcgaat atgaatattc tccgcgagca gaaagagagt ctggagaagc
     1801 tgaacgcgaa gacatggggc gtgcgttatc acgaggacag caacggacgt tttctggtgt
     1861 tgccgaaggg gatgaaagcc gaaacgaact ggacgaagga caacggcaaa ctgaacgcag
     1921 tgagactggt gcaggagtga cagagcatga cggagctgga aagacatttg ctgaacgcat
     1981 tagagcaact gcaacaggac tatatgcagc ggctgaacga atgggagaac gccttcgtgg
     2041 aattgcagaa aatgttttcg cttacgcaac gggacaacgc gatgctgaac gggcgagtca
     2101 tgcagttgag tcagcaggtg cagcacttga gcgagcggac agaacgcttg agccagttat
     2161 acagcgagaa caggagataa gggatgaacg gctgatgcag gaacgcgaac atgagttatc
     2221 tctggagcgg gagcgtcagc cggaaatcca ggagcggaca ctggatggcc cttcgctggg
     2281 atggtgaaac catgaaaaat gacgtgttca gtggattaag gcgggctaat gtggcctgta
     2341 gcatctggtt gcataggtat tcatgcggtt aaaatttatc aggtgcgatc gcggcagttt
     2401 ttcgggtggt ttgttgccat ttttacctgt ctgctgccgt gatcgcaccg aacgcgtttt
     2461 ggcggtgcgt acaatgcgac gttatggtaa atggagcgga ttttcaggaa ggagtgatac
     2521 taacaactcg aacactgtgc aaataatgat ttttttaaaa tatcggtaac gataataaat
     2581 tatttcgttt tacgccggta ataaatataa tgtagtttca gtatataaaa aaatatatga
     2641 ggtgtcttgt gggagctttc atgaatcttc aacaacgtat aaataaacta ccacaattat
     2701 catccagttt ttcatttgga aaagatattg ataatattca ttcatttatc tttaacgaaa
     2761 cttctaaaga taaaattgaa gatttactaa gaaaatgggt gtcaggcaat cagccctgtg
     2821 tatttggtaa attggcaagc aagaaaatta aagggcttga tttccattta tctattgtaa
     2881 atagccccca actatataat gatgatggtc atttgtttga ttttttgcgt aatgaaagag
     2941 ttcatgccat gttcctcgac tacgaagcgg ccaaagatta tgcgacccgc tccaggctgg
     3001 tcacggcggc gaatatccct tctttcggag cgccagaatg atgttggtct ggccggattt
     3061 tcatatggcg ggaaccacgt tgtgtctcaa aatctctgat gttacattgc acaagataaa
     3121 aatatatcat catgaacaat aaaactgtct gcttacataa acagtaatac aaggggtgtt
     3181 atgagccata ttcaacggga aacgtcttgc tcgaggcagc gattaaattc caacctggat
     3241 gctgatttat atgggtataa atgggctcgc gataatgtcg ggcaatcagg tgcgacaatc
     3301 tatcgattgt atgggaagcc cgatgcgcca gagttgtttc tgaaacatgg caaaggtagc
     3361 gttgccaatg atgttacaga tgagatggtc agactaaact ggctgacgga atttatgcct
     3421 cttccgacca tcaagcattt tatccgtact cctgatgatg catggttact caccactgcg
     3481 atccccggga aaacagcatt ccaggtatta gaagaatatc ctgattcagg tgaaaatatt
     3541 gttgatgcgc tggcagcgtt cctgcgccgg ttgcattcga ttcctgtttg taattgtcct
     3601 tttaacagcg atcgcgtatt tcgtctcgct caggcgcaat cacgaatgaa taacggtttg
     3661 gttgatgcga gtgattttga tgatgagcgt aatggctggc ctgttgaaca agtctggaaa
     3721 gaaatgcata agcttttgcc attctcaccg gattcagtcg tcactcatgg tgatttctca
     3781 cttgataatc ttatttttga cgaggggaaa ttaataggtt gtattgatgt tggacgagtc
     3841 ggaatcgcag accgatacca ggatcttgcc attctatgga actgcctcgg tgaattttct
     3901 ccttcattac agaaacggct ttttcaaaaa tatggtattg ataatcctga tatgaataaa
     3961 ttgcagtttc atttgatgct cgatgagttt ttctgatagt tagtctttaa tgaatgcggt
     4021 tggcgcatcg gcgggcacct tgcgcgcgct gtcgctgttc atgccgcgca gcatgtcgat
     4081 ggcatcgagc acacccttgg cggcgggcgc agcccgcaat ttgagcacgc ccaggaactg
     4141 cggcgcgtag cggcgtagcg tggcatagct ttcaccgatg tggtgcagga aatcaaagtc
     4201 ggcaggccgc gccaatgttt gcgcttcggt gacgctggcg gcgaaggtgt cccagggcat
     4261 aacggcctcg aggattgccc cccagcctcc atcgataccg tgccaaatgc acgtaaaaaa
     4321 cgggagcgtt tctggtgtcg gaatgtaacc aagggggtca gaggcgcgct aaaacgctct
     4381 caggggagtc aaatagagac gtttgtaaca aaaagatcaa aggatcctct tgagatcctt
     4441 tttttctgcg cgtaatctgc tgcctgtaaa cgaaaaaacc gccttgcagg gcggtttgat
     4501 cgaaggttaa gtcagcttgc agactgctta accaggtaac tgtcttatgc gagacgagtc
     4561 accaaaattg ttcttctagt gtagccgcac tccggcagcc acttcaagta ctctctaaat
     4621 atctcgcaca tgacttttac caatggctgc tgccagtggc gctttgtggt gtcttttccg
     4681 ggttggaccc aagagaacag ttaccggaga aggcgcagca gtcgggctga acggggggtt
     4741 cctgcataca gcccagcccg gagcgaactg cctaagtcgc cccgagatac cagaagacgt
     4801 gagctatgag aaagcgccac gtgtcccgta agggagaaag gcggaaaagg tatccggtaa
     4861 tcgatatggc gggaacgtgg gggcgcagga gggagcgatt caccggaaac ggtgatgatc
     4921 tttaagccac gtcgggtttc gccaccgctg gcggatttca tggttgagcc gcaaggctcc
     4981 cacagatgca ccgaaaaagt gtctgttttg tgaagtccgt caggggggcg gagcctatgg
     5041 aaaaagcgcc tccggcgcgg cctttcccgg ggtttcgttt tttgcgcaca tgttctttcc
     5101 tggtttatcc ccgggttctg tggataacag ggttagcgtt tttgagaaag gagagtccgc
     5161 tcgccgcagc cgaacgaccg agcgtagcga gtcagtgagc gaggaagcgg aagagcgcct
     5221 gaactggcat tttctcctta cgcatctgtg cggcatttca caccggacat ggcgcacttt
     5281 tcatacaatc cgcactgatg ccgaatggtt
//
