LOCUS       NZ_CP149282             1888 bp    DNA     circular CON 05-APR-2024
DEFINITION  Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain
            Z1322HSL0026 plasmid pZ1322HSL0026-5, complete sequence.
ACCESSION   NZ_CP149282
VERSION     NZ_CP149282.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40440203
            Assembly: GCF_037841875.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
  ORGANISM  Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 1888)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Complete genome sequence of Salmonella enterica subsp. enterica
            serovar 4,[5],12:i:- isolated from humans and pigs
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1888)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-MAR-2024) Division of biotechnology, Jeonbuk National
            University, kobongro, Iksan 54596, South Korea
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.4.9
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 99X
            Sequencing Technology :: Illumina NovaSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037841875.1-RS_2024_04_05
            Annotation Date                   :: 04/05/2024 21:13:16
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,348
            CDSs (total)                      :: 5,225
            Genes (coding)                    :: 5,074
            CDSs (with protein)               :: 5,074
            Genes (RNA)                       :: 123
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 151
            CDSs (without protein)            :: 151
            Pseudo Genes (ambiguous residues) :: 0 of 151
            Pseudo Genes (frameshifted)       :: 41 of 151
            Pseudo Genes (incomplete)         :: 125 of 151
            Pseudo Genes (internal stop)      :: 20 of 151
            Pseudo Genes (multiple problems)  :: 31 of 151
            Pseudo Genes (short protein)      :: 1 of 151
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP149282.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1888
                     /organism="Salmonella enterica subsp. enterica serovar
                     4,[5],12:i:-"
                     /mol_type="genomic DNA"
                     /strain="Z1322HSL0026"
                     /serovar="4,[5],12:i:-"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:440524"
                     /plasmid="pZ1322HSL0026-5"
                     /geo_loc_name="South Korea"
                     /collection_date="2022-07-16"
     gene            complement(507..620)
                     /locus_tag="WIY16_RS26735"
                     /old_locus_tag="WIY16_26735"
     CDS             complement(507..620)
                     /locus_tag="WIY16_RS26735"
                     /old_locus_tag="WIY16_26735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001517211.1"
                     /translation="MHEPPVQSDCCACSGNYRLESNPERHAKAPLAAATGN"
                     /name="hypothetical protein"
     gene            1317..1553
                     /locus_tag="WIY16_RS26740"
                     /old_locus_tag="WIY16_26740"
     CDS             1317..1553
                     /locus_tag="WIY16_RS26740"
                     /old_locus_tag="WIY16_26740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001676031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001676031.1"
                     /translation="MNRLTNLTPAEKKFLDDAIAAAERASGKKLNQPNRHIVLNRARAQ
                     IESQRYADRQRALREDERQQSEFAWSRPRAPRR"
                     /name="hypothetical protein"
     Typing          complement(512..995)
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="95.277"
                     /coverage="80.0"
                     /evalue="0.0"
ORIGIN
        1 ctacccgaaa acatgtaccg aagctcacgt tgtcgttact tatcacaaag taattttacc
       61 cctggggtga atctacgtca attgagccgg tattcctttc tatcaatatg aaggaataaa
      121 cgtatggccg aactgcttac ggcgtttatt aaagcaccac ttataagcca ggtgctgacc
      181 atcattctgt gtctgatctt tgtagtacac agtcttttaa attgatgtac cacccataaa
      241 aaaagccact tatgtggctt tttttatgaa tcgagagata ggtatctgtt gaatatcaca
      301 gatgatcttc ttgagatcct tttcgttgcg tcgtaatctc ttgctctgga aacgaaaaaa
      361 accgcccagc aaggcggttt ttcgaaggtt ctcagagcag caactctttg aaccgcggta
      421 actggcttaa gaggagcgca gtaaccaaat ctgtcctttc agtttagcct taactggcac
      481 ataacttcaa gactaactcc tctaaatcag ttaccagtgg ctgctgccag tggcgctttt
      541 gcatgtcttt ccgggttgga ctcaagtcga tagttaccgg aacaggcgca gcagtcggac
      601 tgaacggggg gttcgtgcat acagtccagc ttggagcgaa ctgccttccc ggaactgagt
      661 gtcaggcgtg gaatgagaga ccgcggccat aacagcggaa tgacaccggt aaaccgaaag
      721 gcaggaacag gagagcgcac gagggagcca ccagggggaa acgcctggta tctttaagtc
      781 ctgtcgggtt tcgccaccac tgatttgagc gtcagatttc gtgatgcttg tcaggggggc
      841 ggagcctatg gaaaaacggc tttgccgcgg ccttatggtt tccctgttaa gtttcttcct
      901 ggcatccact aggaaatttc cgccccatta gtaagcctgc accgctcgcc gcagccgaac
      961 gaccgagcgg agcgagtcag tgagcgagga agcggcattt ctccggcagt gcatcttctg
     1021 ctgacgcata cgaatctcat ttttcacctg ctttatgtgg cagctatgcc tgatgtttct
     1081 gcgatgttac attttaagcc agtatacact ccgctagcgc tatgtgactg gttcagggct
     1141 gcgccccgaa acccgctaaa accactgacg cgcctgcggc ttgcccaacg tctcacgtca
     1201 ccggattaaa atccgctccc gttcaccgtt tctggctgtc tttcagcacc gccagcgctt
     1261 catcggttct gctgtgtctg gcagactgtg cggagttatt ctgacgggag aatgctatga
     1321 acagactgac aaacctgaca cctgcagaga aaaaatttct tgatgatgct attgccgcag
     1381 ctgagagagc gtcaggcaaa aagctaaatc agccgaaccg gcatatcgtc ctgaacagag
     1441 cgcgtgcgca gattgagtcg cagcgttacg ccgaccgcca gcgtgcatta cgtgaggatg
     1501 agcggcagca gtccgagttt gcctggtcac gtccgcgcgc gccgcgccgc tgattgcgcc
     1561 ttttggcggt ttagtggtgc tgacactccg aaatcgtctg ccattcaccc gcgtgcatag
     1621 ccatgcagtc gcgcagaaat catcaggtgc gtttttcagg gttatggcca gggaaaggtg
     1681 ctggaaatgg ctaactcgtt acagagtggc gctgagggcc tctcaggcgg tgcgggcaac
     1741 ggatgttatg gtaaatagag cgttttggtg actcgcccgc cacatcttta gctgtgatat
     1801 aattttacag aaggatgaaa gggcaaaaaa aaagaatccg taaggattct ttttctcgcc
     1861 tcagtcagcg actgcgaatc gctgactg
//
