LOCUS       NZ_CP149281             2137 bp    DNA     circular CON 05-APR-2024
DEFINITION  Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain
            Z1322HSL0026 plasmid pZ1322HSL0026-4, complete sequence.
ACCESSION   NZ_CP149281
VERSION     NZ_CP149281.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40440203
            Assembly: GCF_037841875.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
  ORGANISM  Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2137)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Complete genome sequence of Salmonella enterica subsp. enterica
            serovar 4,[5],12:i:- isolated from humans and pigs
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2137)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-MAR-2024) Division of biotechnology, Jeonbuk National
            University, kobongro, Iksan 54596, South Korea
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.4.9
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 99X
            Sequencing Technology :: Illumina NovaSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037841875.1-RS_2024_04_05
            Annotation Date                   :: 04/05/2024 21:13:16
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,348
            CDSs (total)                      :: 5,225
            Genes (coding)                    :: 5,074
            CDSs (with protein)               :: 5,074
            Genes (RNA)                       :: 123
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 151
            CDSs (without protein)            :: 151
            Pseudo Genes (ambiguous residues) :: 0 of 151
            Pseudo Genes (frameshifted)       :: 41 of 151
            Pseudo Genes (incomplete)         :: 125 of 151
            Pseudo Genes (internal stop)      :: 20 of 151
            Pseudo Genes (multiple problems)  :: 31 of 151
            Pseudo Genes (short protein)      :: 1 of 151
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP149281.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2137
                     /organism="Salmonella enterica subsp. enterica serovar
                     4,[5],12:i:-"
                     /mol_type="genomic DNA"
                     /strain="Z1322HSL0026"
                     /serovar="4,[5],12:i:-"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:440524"
                     /plasmid="pZ1322HSL0026-4"
                     /geo_loc_name="South Korea"
                     /collection_date="2022-07-16"
     gene            499..1494
                     /locus_tag="WIY16_RS26730"
                     /old_locus_tag="WIY16_26730"
     CDS             499..1494
                     /locus_tag="WIY16_RS26730"
                     /old_locus_tag="WIY16_26730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020240588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_038989441.1"
                     /translation="MQNPKLKNLTDYSPDDKPWDVHKSQSDDVGGIYLRAAEFEAYAAR
                     MRDCGGLLRFGWSTLKDTGETRLRLREAHFCRVRHCPVCQWRRSLMWQARFYQSLPKIV
                     ADYPDARWMFLTLTVRNCAIEDLGDTLTAMNAAFQRMKVRKEFKSVQGWIRTTEVTRGR
                     DGSAHPHFHTLMMVPPGMLNGHDYVKHYRWVELWRDCLRVDYDPNVDVRAVKPRKPKDG
                     QTLACATAELVRGAVAETLKYSTKPADMVADPDWFLELTRQTHKRRFVATGGALKDVLK
                     LEQETDQDMVIGDDISDGEDDGSRLAFGWDSTPRKYVRLPERDKFKSDPD"
                     /name="protein rep"
     Typing          complement(1215..1405)
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="84.375"
                     /coverage="98.0"
                     /evalue="1.4200000000000001e-44"
ORIGIN
        1 acagccgcgt gcagtgaatg taatactgca cgtttgtctc aatctgacat ttctcagggg
       61 gggcgattta acgtggtttg cttaattttt gagcttacga atgcttgagt gtttgagtgc
      121 ctgaatgctg cttttggggg ttggtttttc ggccctgaaa ggggcgaaat ccttgtattt
      181 atacttaagg gataactcta ggattcaaat tcgcttccag cccttgtgcc gcaaggcctg
      241 agagccaatt tgctcgaaaa tggttttgtg agtatgattt ctgacaggtg atcgtgtccg
      301 cgaactaatt tttgattact tggggtggtt cccaagacct tacttactga cacgatgata
      361 tgagaaaccc ctgcaagtgc taccaacact tcaggggcgc gatcacctgg ctaaatacgg
      421 tttgaaatcg actcgcaaca ggtgatacgg aaatgataac acacccttcc agcgcctgcc
      481 catattggag caggtgctat gcagaatcct aagctaaaga accttactga ctacagtccc
      541 gacgataagc cgtgggacgt tcacaagtcg caatctgatg atgttggcgg tatctatctg
      601 cgtgcagctg aatttgaggc gtatgcggct cgtatgcgcg attgtggcgg cttgctgcgt
      661 tttggctggt ctacccttaa agacaccgga gaaacgcgtt tacggcttcg tgaggcgcat
      721 ttctgccgcg ttcgtcactg ccctgtctgc cagtggaggc gttccctgat gtggcaagcc
      781 cgtttttatc agtctctgcc gaaaatcgtc gctgattacc ctgatgcccg ctggatgttc
      841 ctcacgctca ccgttcgcaa ctgtgcgatc gaggatctcg gggacacgct tactgccatg
      901 aatgccgcat tccagcgcat gaaggttcgc aaggaattta aatccgtaca gggatggatt
      961 cgcaccacag aagttacccg cggtcgtgat ggctctgcac acccccactt tcacaccctg
     1021 atgatggttc ctcctgggat gctgaacggt catgactacg ttaagcacta ccgctgggtt
     1081 gaactctggc gtgactgcct gcgcgttgat tacgatccta atgttgatgt tcgggcagtg
     1141 aaaccccgca agcctaaaga tggccagact ctggcatgtg ccactgctga actggtgcgc
     1201 ggtgccgttg ctgaaaccct gaaatattcg acaaagccgg ctgatatggt tgccgacccg
     1261 gactggttct tagagctgac ccggcagacg cataaacgcc gttttgttgc gaccggtggc
     1321 gctctgaaag acgttctgaa actggagcag gaaacggatc aggacatggt gatcggggat
     1381 gatatttccg atggtgaaga cgatggttca cgcctcgcct ttggctggga ttcgacgcca
     1441 agaaaatacg tccgtttgcc tgaacgcgat aagtttaaat cagatcctga ttagggtgtc
     1501 ggggcctgcc ctgaccaggt tgtttttgga tgccgctgcg tgtggcggta ctccaaaaac
     1561 acatcttgtc cggtacacag atttcctttg gcattccttc gggtttccct gagatttcca
     1621 ctctgcatac atacacgcat acacgaataa tcaacggcag aattcgggca ggatatgtaa
     1681 agtgggacca ctttacgcct gccttattcg cactctgctc aatggaatat taaatctgac
     1741 agcgttcgcc gccgtcgaat cgtcaacttc taaatcgggg gatcccttta gggttccgat
     1801 ttagtggttg tacgactgca cccctcatac ccttgtgatg ggtgatggtt cacatggtga
     1861 gccatcgccc tgtaaagccg ctttttaccc ccttcaaggc gttgcctgtg gggtaggtgc
     1921 gtaagccctg ccctacaggt gatgccgtgg gggtattttc gttttgctcg gtatgcctta
     1981 ttcgtttaaa tccgccatca ggagtatgcg gggtaaagtc gtgcggccgc gatgaggaac
     2041 ggggattgcc cccgcagctc tgcgaggagg cacacgccgt tcggaatcgg ggtccactct
     2101 gtttaatagt ggactcttgt tgcgatttgc aacggaa
//
