LOCUS       NZ_CP149272             4676 bp    DNA     circular CON 23-APR-2024
DEFINITION  Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain
            Z1322HSL0031 plasmid pZ1322HSL0031-3, complete sequence.
ACCESSION   NZ_CP149272
VERSION     NZ_CP149272.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40440205
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
  ORGANISM  Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4676)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Complete genome sequence of Salmonella enterica subsp. enterica
            serovar 4,[5],12:i:- isolated from humans and pigs
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4676)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-MAR-2024) Division of biotechnology, Jeonbuk National
            University, kobongro, Iksan 54596, South Korea
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method              :: Unicycler v. v0.4.9
            Genome Representation        :: Full
            Expected Final Version       :: Yes
            Genome Coverage              :: 113X
            Sequencing Technology :: Illumina NovaSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI RefSeq
            Annotation Name              :: GCF_038397335.1-RS_2024_04_23
            Annotation Date              :: 04/23/2024 10:52:30
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision :: 6.7
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                :: 4
            CDSs (total)                 :: 4
            Genes (coding)               :: 4
            CDSs (with protein)          :: 4
            Genes (RNA)                  :: 0
            tRNAs                        :: 0
            ncRNAs                       :: 0
            Pseudo Genes (total)         :: 0
            CDSs (without protein)       :: 0
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP149272.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4676
                     /organism="Salmonella enterica subsp. enterica serovar
                     4,[5],12:i:-"
                     /mol_type="genomic DNA"
                     /strain="Z1322HSL0031"
                     /serovar="4,[5],12:i:-"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:440524"
                     /plasmid="pZ1322HSL0031-3"
                     /geo_loc_name="South Korea"
                     /collection_date="2022-07-27"
     gene            join(3969..4676,1..552)
                     /locus_tag="WIY06_RS00005"
                     /old_locus_tag="WIY06_25535"
     CDS             join(3969..4676,1..552)
                     /locus_tag="WIY06_RS00005"
                     /old_locus_tag="WIY06_25535"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /GO_function="GO:0005524 - ATP binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="WP_341875505.1"
                     /translation="MEAQNMSMLAVSSSKDDINLANVVSVRDERILKSALIFGANASGK
                     SNLMKTISLMKDIVLHSVQAIESGITKNVVPFLLDEAGPTKPSEMEMTFIADGIKYRYG
                     LSLFQGKIKEEWLYYTPKTRETILFERDGQLIEINKAAFSESNLFIKDGVIQKTREDVP
                     FVSVVAGFNGEHSKRVVNWFSNVVFISGSNEGMFTGITMKLINESEDFKAWLKKILPAF
                     QINDIYLDEVAPEFPFGNIKTDDDNLKNLFSSIQNFAKNQKVFSLRVVKKTANGEISVP
                     IDFESEGTKKIVYLLGPIYNAMINNNLLLVDEFDSKFHTLLSKFLFRIFHAQSEGFSQV
                     IAAVQDVNLMNTDCFRRDQIWFVDKDVKSGSSHLYSLVEYKEKQRSLKPSYGNDYLSGA
                     FDAIPLFDNLNEFEKLMPEG"
                     /name="ATP-binding protein"
     gene            557..994
                     /locus_tag="WIY06_RS00010"
                     /old_locus_tag="WIY06_25540"
     CDS             557..994
                     /locus_tag="WIY06_RS00010"
                     /old_locus_tag="WIY06_25540"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_052918195.1"
                     /translation="MPKRGKSIRSSSRNEETKPSKSTAKTTDRFISISFKHFHNVDDVG
                     QSINTWKDDGSLPDLIEKLVYLTANGITKVISDGVFTNYTRFPESAVNDFRCPDEISSD
                     EDWGVIKNIGGQKRRVAGFLRDNVFYIVFFDRDHRFWKSQK"
                     /name="hypothetical protein"
     gene            complement(1229..1342)
                     /locus_tag="WIY06_RS00015"
                     /old_locus_tag="WIY06_25545"
     CDS             complement(1229..1342)
                     /locus_tag="WIY06_RS00015"
                     /old_locus_tag="WIY06_25545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007772075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_072101919.1"
                     /translation="MHEPPVQSDRCAFSGNYQLESNPERHDKTPMAAATGN"
                     /name="replication initiation protein"
     gene            complement(1979..2173)
                     /locus_tag="WIY06_RS00020"
                     /old_locus_tag="WIY06_25550"
     CDS             complement(1979..2173)
                     /locus_tag="WIY06_RS00020"
                     /old_locus_tag="WIY06_25550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001041627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_001041631.1"
                     /translation="MNKQQQTALNMARFIKSQSLTLLEKLDALDADEQAAMCERLHELA
                     EELQNSIQIRFEAESETGT"
                     /name="Rop family plasmid primer RNA-binding protein"
     Typing          1822..1906
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="98.837"
                     /coverage="100.0"
                     /evalue="1.41e-35"
     Typing          2210..2308
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="97.0"
                     /coverage="100.0"
                     /evalue="6.26e-40"
     Typing          2420..2687
                     /name="MOBF"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="89.668"
                     /coverage="93.0"
                     /evalue="1.26e-91"
     Typing          complement(1271..1808)
                     /name="rep_cluster_2350"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="87.634"
                     /coverage="99.0"
                     /evalue="1.75e-177"
ORIGIN
        1 ccgtttggca acataaaaac agatgatgat aatttaaaaa atttattcag ctcgattcag
       61 aattttgcaa aaaatcaaaa agtattttct cttagagtcg tgaaaaaaac tgctaatggg
      121 gagatttcgg ttcccattga ttttgaatca gaggggacca aaaagatagt ctatctcctt
      181 gggcctattt ataacgccat gattaacaat aacttattat tggttgatga gttcgattca
      241 aagttccata cccttttatc taagttttta tttaggatat ttcatgcgca aagtgaaggg
      301 tttagccaag taatcgctgc agttcaggat gttaatttaa tgaatactga ttgctttaga
      361 cgagaccaaa tttggtttgt tgacaaggat gtaaagtcag ggagtagcca tctttattct
      421 ttggttgagt acaaagagaa acaaagatca ttgaagccat catatgggaa tgattattta
      481 tcaggtgctt ttgatgcaat cccgttattt gataatctta atgaatttga aaagctaatg
      541 cctgagggat gattatatgc caaagagagg caaaagcatt cgaagctctt cgaggaatga
      601 ggaaacaaaa ccttcaaaga gcacagcgaa aacgactgat agatttatat ctattagttt
      661 taagcatttt cataacgtcg atgatgttgg gcagtccata aatacatgga aagatgatgg
      721 tagcctacct gatctcattg aaaaattggt ttatctaacg gcgaatggaa tcactaaagt
      781 gatttctgac ggtgtgttta ctaactacac tcgatttcct gagtcagctg taaacgattt
      841 tagatgccca gatgagatat cctctgatga ggattggggg gttataaaaa acattggcgg
      901 gcagaaaaga agagtcgccg gatttctgag agataatgtg ttctatatcg tgttttttga
      961 tagagatcat cgcttctgga agagtcaaaa atagatgaga tacagttgta ttgtatgtta
     1021 agaaaagatc ttcttgagat tgtgatgctc tcgtcgtaat ctcttgctct gtaaacgaaa
     1081 aaaccgcctt ggcgggcggt ttttcgacgg ttctaagagt tggcgctctg tgaaccaagg
     1141 taactggctt atgaggagcg cagtaaccaa atctgttctt tcagtttagc cttaacaggc
     1201 gcataacttc aagactaact cctctaaatc agttaccagt ggctgctgcc attggcgttt
     1261 tgtcgtgtct ttccgggttg gactcaagtt gatagttacc ggaaaaggcg cagcggtcgg
     1321 actgaacggg gggttcgtgc atacagtcca gcttggagcg aactgcctac ccggaactga
     1381 gtgtcaggcg tggaatgaga caaacgcggc cataacagcg gagtgacacc ggtaaaccga
     1441 atggcaggaa caggagagcg cacgagggag tcaccagggg gaaacgcctg gtatctttaa
     1501 gtcctgtcgg gtttcgccac ctctgacttg agcatctgtt tttgtgatgc tcgtcagggg
     1561 ggcggagcct atggaaaaac gccagcggcg cggccttcct cctgttcctg gtcttttgct
     1621 cacatgttct ttccggcctt atcccctgat tctgtggata actgtgttac cgtttttgtg
     1681 tgagtcagta ccgctcgccg cagtcgaacg accgagcgta gcgagtcagt gagcgaggaa
     1741 gcggaaaagc gcctggacat gcattttctc cttacgcatc tgtgcggcat ttcacacccg
     1801 gcatggcgta cttttcatac aatccgcact gatgccgcat ggttaagcca gtatacactc
     1861 cgctatcgct acgtgactgg ttcagggctt cgccccgaaa ccccctgacg cgccctgacg
     1921 ggcttgtctg ctgacgaaaa cgcccacggg aaagccgtga ccgcctccgt cagcttcgtt
     1981 atgttcctgt ttcactttcg gcctcaaagc gaatctggat gctgttctgg agttcttctg
     2041 cgagttcgtg cagtcgttcg cacatggccg cctgttcgtc ggcatccaga gcatccagtt
     2101 tttcaagcag tgtcaggctc tggcttttga taaatcgcgc catattcagc gcagtttgtt
     2161 gttgtttgtt caccttccgt tgttctccgt cagttccggg tgtcgggggg accctgagca
     2221 ggtggtaatt gtaagacgtt gcgggcgatg gtattacaat tgcacatcct gtcctgtttc
     2281 tttaggacgt atcatggcac agcatatcaa ctgataaata atccctgtgc agtgcagccg
     2341 ctgttgcata aaatttcgct ctgcgtcgag tgtttcttaa tcaataattc cgctgatact
     2401 ccggaaaaac gcgagtctgt tctcatgccc gaaatgccca caccccacgc aaaaacaatt
     2461 ttttgctgat ttttctttat aaatagagag ttatgacaaa ttagttcttc ttgctctctt
     2521 tgtgatattt aaaaaagcgg tgttggcgca gctacaacac cgcgccgaca ccgcttttta
     2581 ggggtggtac tgactatttt cataaaaaac atcatcttat attaggggtg ctgctagctg
     2641 cgcggtgtgt tttttacagg acgcccctgg gggcgctgcc aggggtgtct gttcagatat
     2701 gtagcaatga gtcagggatt cacgaactga aaatgtccga aaatgtgtct catgggcact
     2761 gtatgcgccc aaaccgatcg tcattcactt tcatgcatag ctatgcagtg agctgaaagc
     2821 gagcctgacg catttttccg gtttaccccg gggaaaacat ctctttttgc ggtgtttgcg
     2881 gcagaatcgc gttcagcgcg ttttagcggt gcgcgcaatc ggatgttatg gtaaatccag
     2941 ctgattggca ggtataaaaa agccgtccgt agacggccta gtaagttact tcgtctttgt
     3001 catcactacc aattcccatc ggatgtcacc tgggacatta tgctgcctat gattttgcgg
     3061 tggcaaagga tcatctttat tgcacgtcac ttcatcacca cagttcgtgc agcggtaaat
     3121 gccggaagcc ggacaagtat ttcccggctt atagtaatac cgccatacac tcccttcagg
     3181 ctcggttgtt tttgttaaaa atttcgctgt gctatctaca taaaaggcca tgttgctttc
     3241 cttacataaa ctaagttagg gaccgaagct tgcatgcttc ggtggttatt gttttttctt
     3301 ttcccgatta attgggatct taaacattcc cccgttagga cgggttatcc gtttgccctt
     3361 taccgttatg taagggcgaa aaatgtatgc ctgaggctcg tccgtctgca tgttgcattt
     3421 cctattttcg ccacatgaat gttgattttt gctatcaaaa ttgtactgta gcaaccaaca
     3481 gatcttgtgg ctggctttat caaagcactt gaggtggtac tcaagcgccg catttgcgta
     3541 tggtttgtta cgggttagtt ctggtggtac aggctaaccc acttacttca acaatttttg
     3601 cttctcctca ttcatgtttc actccctacg tattttttta cagtgtcagc gccactgagc
     3661 ataaacgcga caaaaaggaa ccatccccac ccagataccg agtgaaaagc cagcactgct
     3721 gagctaatca ctgaggcaaa tgggaccatt tggtatagaa aaaacttcat atacacctct
     3781 ttttaagctg gtcgttaact tatctactca taatgtgctg tctattggac ccttttgttg
     3841 ttttagtacg gggttatgct attcttaatc tagaattttg tcaatattgt gcaatttttg
     3901 agtttaaggg tgttgttagg ggtgttctta tgatggttaa ctttagtctt tcaaacgcat
     3961 tttccttcat ggaagctcaa aatatgagca tgttggcggt gtcgtcatcg aaagacgata
     4021 taaacttggc taatgtagtg tcagtaaggg atgagcggat actgaagtct gctttgattt
     4081 tcggagctaa cgctagcgga aaatctaatc tcatgaagac aatatcttta atgaaagata
     4141 ttgtcctgca ttctgtgcaa gctatcgaaa gtggcattac gaagaatgta gtcccttttt
     4201 tacttgatga ggcggggcct actaaaccat ctgaaatgga aatgactttt attgcggatg
     4261 ggattaaata cagatacgga ttatctttat ttcaagggaa gataaaagaa gagtggttgt
     4321 actacacgcc aaaaacaagg gagactattc tctttgagcg agatggtcaa cttattgaaa
     4381 taaataaagc agcatttagc gagtcaaatc tttttataaa ggatggggtc attcagaaga
     4441 caagagaaga tgttcccttt gtttctgttg ttgctggatt taatggggag cactcaaagc
     4501 gtgttgtgaa ttggtttagt aatgtggtat ttatttctgg ttctaacgaa ggaatgttta
     4561 ctggaattac catgaagctt ataaatgaat ctgaagattt taaagcttgg ctaaaaaaaa
     4621 tattaccagc ctttcagatt aatgatattt atcttgatga agttgcgcct gaattc
//
