LOCUS       NZ_CP149260             2137 bp    DNA     circular CON 23-APR-2024
DEFINITION  Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain
            Z1322HSL0042 plasmid pZ1322HSL0042-4, complete sequence.
ACCESSION   NZ_CP149260
VERSION     NZ_CP149260.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40440209
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
  ORGANISM  Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2137)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Complete genome sequence of Salmonella enterica subsp. enterica
            serovar 4,[5],12:i:- isolated from humans and pigs
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2137)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-MAR-2024) Division of biotechnology, Jeonbuk National
            University, kobongro, Iksan 54596, South Korea
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method              :: Unicycler v. v0.4.9
            Genome Representation        :: Full
            Expected Final Version       :: Yes
            Genome Coverage              :: 131X
            Sequencing Technology :: Illumina NovaSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI RefSeq
            Annotation Name              :: GCF_038397285.1-RS_2024_04_23
            Annotation Date              :: 04/23/2024 10:47:19
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision :: 6.7
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                :: 1
            CDSs (total)                 :: 1
            Genes (coding)               :: 1
            CDSs (with protein)          :: 1
            Genes (RNA)                  :: 0
            tRNAs                        :: 0
            ncRNAs                       :: 0
            Pseudo Genes (total)         :: 0
            CDSs (without protein)       :: 0
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP149260.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2137
                     /organism="Salmonella enterica subsp. enterica serovar
                     4,[5],12:i:-"
                     /mol_type="genomic DNA"
                     /strain="Z1322HSL0042"
                     /serovar="4,[5],12:i:-"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:440524"
                     /plasmid="pZ1322HSL0042-4"
                     /geo_loc_name="South Korea"
                     /collection_date="2022-08-24"
     gene            complement(642..1637)
                     /locus_tag="WIY15_RS00005"
                     /old_locus_tag="WIY15_26600"
     CDS             complement(642..1637)
                     /locus_tag="WIY15_RS00005"
                     /old_locus_tag="WIY15_26600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020240588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_038989441.1"
                     /translation="MQNPKLKNLTDYSPDDKPWDVHKSQSDDVGGIYLRAAEFEAYAAR
                     MRDCGGLLRFGWSTLKDTGETRLRLREAHFCRVRHCPVCQWRRSLMWQARFYQSLPKIV
                     ADYPDARWMFLTLTVRNCAIEDLGDTLTAMNAAFQRMKVRKEFKSVQGWIRTTEVTRGR
                     DGSAHPHFHTLMMVPPGMLNGHDYVKHYRWVELWRDCLRVDYDPNVDVRAVKPRKPKDG
                     QTLACATAELVRGAVAETLKYSTKPADMVADPDWFLELTRQTHKRRFVATGGALKDVLK
                     LEQETDQDMVIGDDISDGEDDGSRLAFGWDSTPRKYVRLPERDKFKSDPD"
                     /name="protein rep"
     Typing          732..922
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="84.375"
                     /coverage="98.0"
                     /evalue="1.4200000000000001e-44"
ORIGIN
        1 ccgttgcaaa tcgcaacaag agtccactat taaacagagt ggaccccgat tccgaacggc
       61 gtgtgcctcc tcgcagagct gcgggggcaa tccccgttcc tcatcgcggc cgcacgactt
      121 taccccgcat actcctgatg gcggatttaa acgaataagg cataccgagc aaaacgaaaa
      181 tacccccacg gcatcacctg tagggcaggg cttacgcacc taccccacag gcaacgcctt
      241 gaagggggta aaaagcggct ttacagggcg atggctcacc atgtgaacca tcacccatca
      301 caagggtatg aggggtgcag tcgtacaacc actaaatcgg aaccctaaag ggatcccccg
      361 atttagaagt tgacgattcg acggcggcga acgctgtcag atttaatatt ccattgagca
      421 gagtgcgaat aaggcaggcg taaagtggtc ccactttaca tatcctgccc gaattctgcc
      481 gttgattatt cgtgtatgcg tgtatgtatg cagagtggaa atctcaggga aacccgaagg
      541 aatgccaaag gaaatctgtg taccggacaa gatgtgtttt tggagtaccg ccacacgcag
      601 cggcatccaa aaacaacctg gtcagggcag gccccgacac cctaatcagg atctgattta
      661 aacttatcgc gttcaggcaa acggacgtat tttcttggcg tcgaatccca gccaaaggcg
      721 aggcgtgaac catcgtcttc accatcggaa atatcatccc cgatcaccat gtcctgatcc
      781 gtttcctgct ccagtttcag aacgtctttc agagcgccac cggtcgcaac aaaacggcgt
      841 ttatgcgtct gccgggtcag ctctaagaac cagtccgggt cggcaaccat atcagccggc
      901 tttgtcgaat atttcagggt ttcagcaacg gcaccgcgca ccagttcagc agtggcacat
      961 gccagagtct ggccatcttt aggcttgcgg ggtttcactg cccgaacatc aacattagga
     1021 tcgtaatcaa cgcgcaggca gtcacgccag agttcaaccc agcggtagtg cttaacgtag
     1081 tcatgaccgt tcagcatccc aggaggaacc atcatcaggg tgtgaaagtg ggggtgtgca
     1141 gagccatcac gaccgcgggt aacttctgtg gtgcgaatcc atccctgtac ggatttaaat
     1201 tccttgcgaa ccttcatgcg ctggaatgcg gcattcatgg cagtaagcgt gtccccgaga
     1261 tcctcgatcg cacagttgcg aacggtgagc gtgaggaaca tccagcgggc atcagggtaa
     1321 tcagcgacga ttttcggcag agactgataa aaacgggctt gccacatcag ggaacgcctc
     1381 cactggcaga cagggcagtg acgaacgcgg cagaaatgcg cctcacgaag ccgtaaacgc
     1441 gtttctccgg tgtctttaag ggtagaccag ccaaaacgca gcaagccgcc acaatcgcgc
     1501 atacgagccg catacgcctc aaattcagct gcacgcagat agataccgcc aacatcatca
     1561 gattgcgact tgtgaacgtc ccacggctta tcgtcgggac tgtagtcagt aaggttcttt
     1621 agcttaggat tctgcatagc acctgctcca atatgggcag gcgctggaag ggtgtgttat
     1681 catttccgta tcacctgttg cgagtcgatt tcaaaccgta tttagccagg tgatcgcgcc
     1741 cctgaagtgt tggtagcact tgcaggggtt tctcatatca tcgtgtcagt aagtaaggtc
     1801 ttgggaacca ccccaagtaa tcaaaaatta gttcgcggac acgatcacct gtcagaaatc
     1861 atactcacaa aaccattttc gagcaaattg gctctcaggc cttgcggcac aagggctgga
     1921 agcgaatttg aatcctagag ttatccctta agtataaata caaggatttc gcccctttca
     1981 gggccgaaaa accaaccccc aaaagcagca ttcaggcact caaacactca agcattcgta
     2041 agctcaaaaa ttaagcaaac cacgttaaat cgccccccct gagaaatgtc agattgagac
     2101 aaacgtgcag tattacattc actgcacgcg gctgttt
//
