LOCUS       NZ_CP149256             2966 bp    DNA     circular CON 23-APR-2024
DEFINITION  Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain
            Z1322HSL0047 plasmid pZ1322HSL0047-5, complete sequence.
ACCESSION   NZ_CP149256
VERSION     NZ_CP149256.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40440210
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
  ORGANISM  Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2966)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Complete genome sequence of Salmonella enterica subsp. enterica
            serovar 4,[5],12:i:- isolated from humans and pigs
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2966)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-MAR-2024) Division of biotechnology, Jeonbuk National
            University, kobongro, Iksan 54596, South Korea
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.4.9
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 116X
            Sequencing Technology :: Illumina NovaSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038397255.1-RS_2024_04_23
            Annotation Date                   :: 04/23/2024 10:47:16
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5
            CDSs (total)                      :: 5
            Genes (coding)                    :: 4
            CDSs (with protein)               :: 4
            Genes (RNA)                       :: 0
            tRNAs                             :: 0
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 1
            CDSs (without protein)            :: 1
            Pseudo Genes (ambiguous residues) :: 0 of 1
            Pseudo Genes (frameshifted)       :: 0 of 1
            Pseudo Genes (incomplete)         :: 1 of 1
            Pseudo Genes (internal stop)      :: 0 of 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP149256.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2966
                     /organism="Salmonella enterica subsp. enterica serovar
                     4,[5],12:i:-"
                     /mol_type="genomic DNA"
                     /strain="Z1322HSL0047"
                     /serovar="4,[5],12:i:-"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:440524"
                     /plasmid="pZ1322HSL0047-5"
                     /geo_loc_name="South Korea"
                     /collection_date="2022-08-30"
     gene            complement(join(2746..2966,1..1228))
                     /locus_tag="WIY08_RS00005"
                     /old_locus_tag="WIY08_24195"
     CDS             complement(join(2746..2966,1..1228))
                     /locus_tag="WIY08_RS00005"
                     /old_locus_tag="WIY08_24195"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /GO_function="GO:0051908 - double-stranded DNA 5'-3' DNA
                     exonuclease activity [Evidence IEA]"
                     /GO_process="GO:0090304 - nucleic acid metabolic process
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="RecE family exodeoxyribonuclease"
                     /protein_id="WP_341875494.1"
                     /translation="MSGTNPVFLVRKAKKSSGQKDAVLWCSDDFEAANATLDYLLIKSG
                     AKLKDYFKAVATNFPVVNELPPEGELSLTFCDYYQLAKDNMTWTQIPGVTLPSSEAAAA
                     ARQHIVDGVDTETGEVLEDHTENFGNESNSPAQATAPAPELTVVATMPLRHRVLAQYIG
                     EGEYLYHVDASQKKEILRLEMDTDNSYVQNLLLAAENVEAFKKAIEHDIHKIVNAVKKI
                     FPVDGKTPELATVIQFLKTWFETEHIDRGLLVKEWAKGNRVSAIQRTESGANAGGGNKT
                     DRNPDYEHTLDTLDVEIAMATLPMDFNIYELPGSVYRRAKEIVKKKESPFKEWSAALRA
                     TPGILDYSRAAIFALIRSAHPEFYHYPGRLQGYINANLTETDHENPTEEALTAARHTPE
                     KDAVEEANRQLNSSCHSNYKFAGNFVFKPAVNGLSTATKSASQLSLATHGKDLALNSYF
                     HWSVSLSEDTTNYSNLIDTVKLFR"
                     /name="RecE family exodeoxyribonuclease"
     gene            complement(1355..1705)
                     /locus_tag="WIY08_RS00010"
                     /old_locus_tag="WIY08_24200"
     CDS             complement(1355..1705)
                     /locus_tag="WIY08_RS00010"
                     /old_locus_tag="WIY08_24200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001539619.1"
                     /translation="MKNSPLIWRGFLHPEFKTGEIMEIVKIEMNLKAVNKSIALFNCEK
                     KVSGVIHSNSTGETTVILDGGYVLGKFDCPHCAVKAISLLTVKVSDGEQAGFGNYRSYK
                     LDYSEKFYQTIH"
                     /name="hypothetical protein"
     gene            complement(1727..1885)
                     /locus_tag="WIY08_RS00015"
                     /old_locus_tag="WIY08_24205"
     CDS             complement(1727..1885)
                     /locus_tag="WIY08_RS00015"
                     /old_locus_tag="WIY08_24205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdaE family protein"
                     /protein_id="WP_000917562.1"
                     /translation="MLKQCGYCRKSIDEGKEVKNTLLYLNGSQLARKEKEYCSRQCAEY
                     DQMAHES"
                     /name="YdaE family protein"
     gene            complement(1878..>2033)
                     /locus_tag="WIY08_RS00020"
                     /old_locus_tag="WIY08_24210"
                     /pseudo=""
     CDS             complement(1878..>2033)
                     /locus_tag="WIY08_RS00020"
                     /old_locus_tag="WIY08_24210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461564.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /name="hypothetical protein"
     gene            complement(2284..2688)
                     /locus_tag="WIY08_RS00025"
                     /old_locus_tag="WIY08_24215"
     CDS             complement(2284..2688)
                     /locus_tag="WIY08_RS00025"
                     /old_locus_tag="WIY08_24215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001009036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="WP_001009037.1"
                     /translation="MNFGERLQRVLNETGITQSELGRRVGATSQSVNGWCQSGILPRKD
                     ILELLPKATGKPLYWFFMEDDEESDVPERLTQGGPTDLNDRQKRLLEIFDQLPTVEQDR
                     FIELAGARLQELDDFMAEYQRRRKIEPPSR"
                     /name="transcriptional regulator"
ORIGIN
        1 gctgtcggtt ggcttcttct accgcgtctt tttccggagt gtgtcgggca gccgtgagag
       61 cttcctcggt ggggttctcg tgatcagtct ccgttaagtt ggcgttgata tacccctgaa
      121 ggcgtccggg gtagtgataa aactcagggt gcgcgcttcg gatcagcgcg aaaatagcgg
      181 cgcgggaata atccaggata ccgggcgttg cgcgaagtgc tgcggaccat tctttgaacg
      241 gactttcctt tttctttacg atttcttttg cgcgacggta aacgctgcca ggtagctcat
      301 agatattaaa gtccataggc aaagtggcca ttgcaatctc tacgtccaga gtatcgagag
      361 tatgttcgta atcagggtta cggtcagtct tattgccacc gccagcgttg gcgccgcttt
      421 cagtgcgttg aatagccgat acacggttgc ctttcgccca ctccttaacg agcaaaccgc
      481 gatcgatatg ctccgtctcg aaccatgttt taaggaactg gataacagtc gccagttcag
      541 gagtttttcc atcgacaggg aatatttttt taacggcatt cactattttg tgaatgtcat
      601 gttcaatggc tttcttgaac gcttcaacat tctcggcggc aagcagcagg ttctggacat
      661 atgaattatc ggtgtccatt tcgagacgca gaatttcttt tttctgggag gcgtcgacgt
      721 gataaagata ctcaccttca cctatgtact gagcaagaac gcggtgacgg agaggcatag
      781 ttgcgacaac agtcagctcg ggggctgggg ctgttgcctg ggcagggctg ttgctttcgt
      841 taccaaaatt ttcggtgtgg tcttccagca cttcgcctgt ttcggtatca acaccatcga
      901 cgatatgctg gcgcgccgcg gcggcggctt cagatgatgg cagggtgacg ccggggattt
      961 gcgtccaggt catattgtct ttagcgagtt gatagtaatc gcagaaagtg aggctcagtt
     1021 cgccttccgg cggcagctcg ttaacgacag ggaaattagt agcgacagct ttgaaataat
     1081 ctttcagctt cgcaccggat ttaatcagaa gataatccag tgttgcattt gccgcttcaa
     1141 aatcatcact gcaccagagt acagcgtctt tctggcctga tgatttcttt gctttgcgga
     1201 ctaaaaatac aggattagtt ccactcattg ttttgtcctc aattcgtgta gaatggaggt
     1261 gccttaacag caccccgata tatctggttg ttaggtccgg ttcgctttgg tcggttggac
     1321 cggacagggc acgcccgctt cggtgggcgt tttcttaatg gatggtctga taaaattttt
     1381 ctgagtaatc aagcttgtaa cttcggtaat taccaaaccc tgcttgttct ccatcactta
     1441 ccttgactgt gagcagcgaa atggctttta cagcacaatg aggacagtcg aactttccga
     1501 gtacatatcc accgtcgaga atcacagtgg tttcgccagt tgaatttgag tgaataacgc
     1561 ctgagacttt cttttcgcaa ttgaataaag caatgctctt attaactgct ttcaggttca
     1621 tttctatttt tacgatttcc ataatttctc cagtcttaaa ttcagggtgt aggaagccac
     1681 gccaaattaa tggcgaattt ttcatttcat atttcggaac tactatttaa ctttcgtgcg
     1741 ccatctggtc gtattcagcg cactgcctgg aacaatattc cttttctttg cgcgccagtt
     1801 gcgagccgtt gagatagaga agggtgtttt ttacttcttt gccttcatca atggatttgc
     1861 ggcagtaacc gcattgttta agcatccgga tctcctttct gcgccagcag gtagcagagg
     1921 cggcggatta aaacctcaat ccggttgagc gggacggcct gctgtcgagc tggtttacgt
     1981 gcgaaatcaa tcattctcac cctcgtttgc cttatcgccg gccagcggaa cgtttatcac
     2041 ctgctgcgcg ttaaccttgc catctcattc cggtcttcgt atgccccggg cggctacttc
     2101 gtgggcgtcc tgccttgatg actcgttgct gcgtttgata ggttaagtat tatcgattca
     2161 atcgatatat gtcaattaaa tttgatgatt aattttacag ggaagattaa gaaagcgaga
     2221 tgtgggtgaa ttaatgacat aaaaaaaccg ccagttaagg cggttagtag ttttaaagct
     2281 ggtttagcga gaaggaggct cgatttttct gcgtctttgg tattcagcca tgaaatcgtc
     2341 tagttcttga agtctggcgc ctgccagctc aataaaacgg tcttgttcaa cagtcggtag
     2401 ctgatcaaat atttctaaga gccgcttttg tcggtcattg agatctgttg gaccaccttg
     2461 tgttagacgt tcaggcacat ccgattcctc atcatcctcc atgaagaacc aatacaacgg
     2521 cttacccgtg gccttaggta acaactctaa gatatctttt cggggaagaa tgccggactg
     2581 acaccaacca ttaactgatt gagaggtagc gccgactcta cgacctaact cagattgggt
     2641 gatcccagtc tcattaagca ctctttgtaa acgctctcca aagttcattt ttcgttctcg
     2701 cacaattaca tggtttcatt atacagattt tttctgtagg tatgactatc gaaataattt
     2761 gacagtatcg attaaatttg aataattggt tgtatcttca ctcaatgaga ccgaccaatg
     2821 aaagtaactg ttcaacgcaa gatcctttcc gtgtgtagcc aggctgagtt gggacgccga
     2881 cttggtcgcc gtgctcagac cgttaacggc tggtttaaaa acaaagttcc cggcgaactt
     2941 gtagttcgag tggcaagagc tattga
//
