LOCUS       NZ_CP149255             6760 bp    DNA     circular CON 23-APR-2024
DEFINITION  Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain
            Z1322HSL0047 plasmid pZ1322HSL0047-4, complete sequence.
ACCESSION   NZ_CP149255
VERSION     NZ_CP149255.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40440210
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
  ORGANISM  Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 6760)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Complete genome sequence of Salmonella enterica subsp. enterica
            serovar 4,[5],12:i:- isolated from humans and pigs
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6760)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-MAR-2024) Division of biotechnology, Jeonbuk National
            University, kobongro, Iksan 54596, South Korea
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method              :: Unicycler v. v0.4.9
            Genome Representation        :: Full
            Expected Final Version       :: Yes
            Genome Coverage              :: 116X
            Sequencing Technology :: Illumina NovaSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI RefSeq
            Annotation Name              :: GCF_038397245.1-RS_2024_04_23
            Annotation Date              :: 04/23/2024 10:55:10
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision :: 6.7
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                :: 4
            CDSs (total)                 :: 4
            Genes (coding)               :: 4
            CDSs (with protein)          :: 4
            Genes (RNA)                  :: 0
            tRNAs                        :: 0
            ncRNAs                       :: 0
            Pseudo Genes (total)         :: 0
            CDSs (without protein)       :: 0
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP149255.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..6760
                     /organism="Salmonella enterica subsp. enterica serovar
                     4,[5],12:i:-"
                     /mol_type="genomic DNA"
                     /strain="Z1322HSL0047"
                     /serovar="4,[5],12:i:-"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:440524"
                     /plasmid="pZ1322HSL0047-4"
                     /geo_loc_name="South Korea"
                     /collection_date="2022-08-30"
     gene            complement(68..262)
                     /locus_tag="WIY08_RS00005"
                     /old_locus_tag="WIY08_24175"
     CDS             complement(68..262)
                     /locus_tag="WIY08_RS00005"
                     /old_locus_tag="WIY08_24175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001041627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_001041631.1"
                     /translation="MNKQQQTALNMARFIKSQSLTLLEKLDALDADEQAAMCERLHELA
                     EELQNSIQIRFEAESETGT"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            1142..3007
                     /locus_tag="WIY08_RS00010"
                     /old_locus_tag="WIY08_24180"
     CDS             1142..3007
                     /locus_tag="WIY08_RS00010"
                     /old_locus_tag="WIY08_24180"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006816428.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA];
                     GO:0008168 - methyltransferase activity [Evidence IEA];
                     GO:1904047 - S-adenosyl-L-methionine binding [Evidence
                     IEA]"
                     /GO_process="GO:0006306 - DNA methylation [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="WP_021558993.1"
                     /translation="MQTELIKELNKVLKAFPQFWNGEELQRSMVSDAISQKQPDLIKAL
                     VDNEKVRSVYGVDIDGIFIFDFDKLCGLLKYKEYWANSFTKYRNKVGLTSEGKYLDYSS
                     DVVLDFPFKDCILEGGMTKENQGKDEIYYNEIIAMDEVDSLLSPKAFTNAKRYTKEGVK
                     ENITKFNDDENLIIKGNNLIALHSIKKLYAGKVKLIYIDPPYNTGSDSFKYNDRFNRST
                     WLTFMKNRLEVAKEMLSDDGFIFIQCDDNESAYLKVLCDSIFGEENYRNSIYWHRTYAG
                     KTVKSKLPWNTDTILFYSKKESSLLEPYTAELSAADIKSYNKDDFDGRGKYNTVSLQKT
                     SSPGPQTTYDYIDNTGKKWSCPEKGWRMTKEKLKALENDNRLYITDKTIREKYYLKERK
                     EIGKQIDNFWHDIGNLNRVSDVAFIDGQKTEKLMQRIISLASKENDIVLDFHLGSGTSA
                     AAAHKMGRRYIGIEQMDYINEITVPRLQKVIEGEQGGISKDVNWQGSGSFVYVELVELN
                     AYFIHEIQKAQSTEELEKLFAVMKTEAYLNYQVALENVLSAEYEVDGILHKVAFSELEL
                     HEQKQLLIEILDKNQLYVNVSDMEDSDLNISESDKAFTRSFYGME"
                     /name="site-specific DNA-methyltransferase"
     gene            3012..5648
                     /locus_tag="WIY08_RS00015"
                     /old_locus_tag="WIY08_24185"
     CDS             3012..5648
                     /locus_tag="WIY08_RS00015"
                     /old_locus_tag="WIY08_24185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012443154.1"
                     /GO_function="GO:0005524 - ATP binding [Evidence IEA];
                     GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 -
                     hydrolase activity [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="WP_052512605.1"
                     /translation="MAKKPKSAGREKLLFNKLKQFDEPGLFHDNYQTPDYIQANLKDIL
                     RPYQHSALRYLHYTQRKRDDALLHYRHLLFHMATGAGKTMVMAGTILYLFKEFGYQNFI
                     FFVHTDAIIQKTRENLLNPQSPKYLFSHELEIDGEKITIAPVDIFPSVPERNTIYLKLS
                     TIHKMHDELNSYRENSITYEDLKEIPLVLLGDEAHHFNAGTKARGKSKTSPENEEQTWE
                     RTIENILDLRPDNRLFEFTATIDLANKDIGQKYRDKVVYQYDLKQFMSDGYSKKVMLLE
                     ANQNDSDKMLDAVLLSQYRKLTAADHGITGFKPVILFKSNKIAISKAKQEEFSQLIAAM
                     TPESIRRHLANKKLQLSSDTSIWHKVIQRYADSDLVTVTGQIQEDFNDFNLLNVNKSDL
                     LEENPVLLNTLEEVDNPVRAVFAVAKVNEGWDVLNLYDIVRISEQASSSKTSTDSEAQL
                     IGRGARYYPFIYDGQRSFTRRFDNSTKDLSVLEQLHYHTINEPAYIKTLHASLEQADID
                     VHQDGGGTVEHARLKEDFKKSAVYQAGKLYFNEVEEIERSSRNWETYSLETRFEIQYQI
                     ACEESLDNLTGTKGGIIKPEPLVLDERFYRKAMQRISFYALDNLKRFFPKLTGIREFIR
                     SDAYLGKLKITVSVPQSLDFTTVPAKDKLHLLENVLLRISENVRRNDQKVKGTYRFISQ
                     PVKEVIKDYSLHIDPSVAINQKITAAPTIGKKWYVYDNAILNQLEHRLIKMLEAFMPKL
                     KARYDDIYVLRNDEQSTRFKLTEFGGVRGFMPDFIMILTRHSDNTYWQVFLEPKGDDRL
                     LDDAWKERMLETLNDRERIVIDENEHVRLVGIKFFANSQMDVFVSDMQNKLNDGESLET
                     SSLSLPL"
                     /name="DEAD/DEAH box helicase family protein"
     gene            complement(6049..6162)
                     /locus_tag="WIY08_RS00020"
                     /old_locus_tag="WIY08_24190"
     CDS             complement(6049..6162)
                     /locus_tag="WIY08_RS00020"
                     /old_locus_tag="WIY08_24190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_071588254.1"
                     /translation="MHEPPVQPDRCALSGNYRLESNPVRHDLSPLAAATGN"
                     /name="replication initiation protein"
     Typing          299..397
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="98.0"
                     /coverage="100.0"
                     /evalue="1.35e-41"
     Typing          522..777
                     /name="MOBF"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="92.248"
                     /coverage="89.0"
                     /evalue="2.69e-98"
     Typing          6568..6741
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="96.571"
                     /coverage="100.0"
                     /evalue="2.6e-76"
     Typing          complement(6091..6614)
                     /name="rep_cluster_2350"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="93.359"
                     /coverage="94.0"
                     /evalue="0.0"
ORIGIN
        1 gccctgacgg gcttgtctgc tgacgaaaac gcccacggga aagccgtgac cgcctccgtc
       61 agcttcgtta tgttcctgtt tcactttcgg cctcaaagcg aatctggatg ctgttctgga
      121 gttcttctgc gagttcgtgc agtcgttcgc acatggccgc ctgttcgtcg gcatccagag
      181 catccagttt ttcaagcagt gtcaggctct ggcttttgat aaatcgcgcc atattcagcg
      241 cagtttgttg ttgtttgttc accttccgtt gttctccgtc agttccgggt gtcgggggga
      301 ccctgagcag gtggtaattg taagacgttg cgggcgacgg tattacaatt gcacatcctg
      361 tcctgtttct ttaggacgta tcatggcaca gcatatcaac tgataaataa tccctgtgca
      421 gtgcagccgc tgttgcataa aatttcgctc tgcgtcgagt gtttcttaat caataattcc
      481 gctgatactc cggaaaaacg cgagtctgtt ctcatgcctg aaatgcccac accccacgca
      541 aaaacaattt tttgctgatt tttctttata aatagagagt tatgacaaat tagttcttct
      601 tgctctcttt gtgatattta aaaaagcggt gtcggcgcag ctacaacacc gcgccgacac
      661 cgctttttag gggtggtact gactattttc ataaaaaaca tcatcttata ttaggggtgc
      721 tgctagcggc gcggtgtgtt tttttacagg acgcccctgg gggcgctgct aggggtgtct
      781 gttcagatat gtagcaatga gtcagggatt cacgaactga aaatgtccga aaatgtgtct
      841 catgggtact gtatgcgccc aaaccgatcg tcattcactt tcatgcatag ctatgcagtg
      901 agctgaaagt gatcctgacg catttttccg gtttaccccg gggaaaacat ctctttttgc
      961 ggtgtttgcg gcagaatcgc gttcagcgcg ttttagcggt gcgcgcaaga gcgtttatgt
     1021 taaatactac tcgttctggt gcattttccc gcaactgaat ccaactcatc gctgttgggt
     1081 tccagcgccg aacgctatac cttacaatca ttccaatatt taacagtcat aaggccatga
     1141 catgcagacc gaattaataa aagaacttaa caaggtttta aaagcgttcc cgcaattctg
     1201 gaatggagag gaattacaac gttcaatggt gagtgacgct atcagtcaaa agcagccaga
     1261 tcttatcaag gcattagtcg ataatgaaaa agtccgctct gtttatggtg tggatattga
     1321 tggcattttt atctttgatt ttgacaaatt atgtggtctt ctaaaataca aagaatattg
     1381 ggctaatagc tttactaaat accggaacaa agtgggatta actagcgaag gtaaatacct
     1441 tgattacagt tctgatgtgg tgctggattt tcctttcaag gattgtattc ttgaaggtgg
     1501 aatgaccaaa gaaaatcagg gaaaagatga gatttattat aatgaaatca tagcaatgga
     1561 tgaagttgac tctttgcttt ctcccaaggc gttcactaat gctaagcgat ataccaaaga
     1621 gggggtaaaa gaaaatatca ctaaatttaa cgatgatgaa aatttaataa ttaagggaaa
     1681 caatctcatt gcactacatt caataaaaaa actttacgca ggaaaagtaa agttaattta
     1741 tatagacccg ccttacaata cagggagtga tagctttaag tataatgatc gattcaatcg
     1801 ctcaacatgg ttgacattca tgaaaaatag gcttgaggtg gctaaagaaa tgctttccga
     1861 tgatggcttt atttttattc aatgcgatga taatgaatca gcatatctta aagttttatg
     1921 tgattcaatt tttggagaag agaattatag aaactcaatc tattggcata gaacctacgc
     1981 agggaaaact gtaaaaagta agttgccatg gaatacagat acaatattgt tttattctaa
     2041 aaaagaaagt tcattattag agccatatac agcagaactt agtgctgctg acattaaatc
     2101 ctataacaag gatgattttg atggaagggg taaatacaac actgttagct tgcaaaaaac
     2161 aagctctcca gggccgcaaa caacttatga ttatatagat aatacaggta agaaatggag
     2221 ttgccctgaa aaagggtgga gaatgacaaa ggaaaagtta aaggctttgg aaaacgacaa
     2281 taggctatat atcactgaca aaacaatacg agaaaaatat tatcttaaag aaagaaaaga
     2341 gatcgggaaa caaatagata atttttggca tgacattggg aatttaaata gggtttccga
     2401 tgttgctttt attgatggac aaaaaactga aaaattaatg caacggataa ttagccttgc
     2461 ttccaaagaa aatgatatcg tcttggactt tcatctcggc agcggaacta gcgcagcagc
     2521 agcccataaa atgggacgtc gctatatcgg tattgagcag atggattaca tcaatgagat
     2581 caccgtgcca cgtttgcaaa aagtcattga gggtgagcag ggaggtatct caaaagacgt
     2641 caactggcag gggagcggca gctttgtcta cgttgaacta gtggaactga acgcttactt
     2701 catacatgaa atccagaaag cgcagtccac ggaagaactc gaaaaactct ttgccgtgat
     2761 gaagacagag gcatatctca actatcaggt ggctctggaa aatgtgctgt ccgctgagta
     2821 cgaagtggat gggatcctcc ataaggtagc attcagtgaa ctggaactgc atgagcagaa
     2881 gcagcttttg attgaaatcc tagataagaa ccagctctac gtgaatgtct ctgatatgga
     2941 ggacagcgac ctgaacattt cagagagtga taaagccttt acccgcagct tctacggaat
     3001 ggagtgacgg catggcgaag aaaccgaagt cagcaggtag agagaagctg ctgtttaaca
     3061 agctgaagca gttcgatgaa ccaggactgt tccacgataa ctatcagacg ccggactata
     3121 ttcaggcaaa cctgaaagat atcctgcgtc cctatcagca cagcgcactg cgttacctgc
     3181 attacacgca acgtaaacgt gatgacgcgc ttctgcatta ccgtcacctg ctgtttcaca
     3241 tggcaaccgg tgcagggaaa acgatggtta tggcaggaac gatactctat ctatttaaag
     3301 agttcgggta tcagaacttc atctttttcg tacataccga cgcgattatc cagaaaacgc
     3361 gagagaacct acttaacccg caatcgccga agtacctgtt cagtcatgag ctggaaatcg
     3421 acggggaaaa aatcaccatc gcaccggtag atatattccc gtccgtaccg gaacgcaaca
     3481 cgatttacct caagctctcg actatccata agatgcacga tgagctgaac agctatcgag
     3541 agaacagcat tacctacgag gatttaaaag aaatcccgct tgtgctactc ggtgacgagg
     3601 cgcatcactt caacgccggc accaaagcta gaggcaagtc gaaaacctca ccggagaacg
     3661 aggagcagac ttgggagcgt acgattgaga acatcctcga cctgcgaccg gataaccgcc
     3721 tgttcgagtt caccgctacc attgaccttg caaacaaaga tatcggacag aaataccgtg
     3781 acaaggtggt atatcagtat gatctgaagc agttcatgtc agacggttac tcgaaaaagg
     3841 tcatgctgtt ggaagcaaac cagaacgaca gcgacaagat gctcgatgcg gtactgttaa
     3901 gccagtaccg taaactgacg gcagcagatc acggcatcac cggctttaaa ccggtcattc
     3961 tgttcaagtc gaataagatt gcgatatcaa aggcgaagca ggaggagttt tcgcaactga
     4021 ttgccgccat gacacctgag agcatcagac gtcatctggc taacaaaaaa ctccagctca
     4081 gctctgacac cagtatctgg cataaagtga ttcagcgtta cgctgacagt gatttagtga
     4141 cggtgactgg acaaattcag gaggacttta acgactttaa cctgctgaac gtcaacaagt
     4201 cagacctgct ggaggaaaac cccgtcctgc tgaatacact ggaagaagtc gataatccag
     4261 tgagagccgt ctttgctgtc gcgaaggtga atgaaggctg ggacgtactt aacctctacg
     4321 atattgttcg cataagcgag caggcgagca gcagcaaaac cagcacggac agcgaagcgc
     4381 agcttattgg gcgaggtgcg cgttactacc cgttcattta tgacggtcaa cgtagcttca
     4441 cccgccgttt tgataacagt acgaaggatt tgagcgtact ggagcaactg cactatcaca
     4501 ccatcaatga accggcgtac atcaaaacac tgcacgcctc tctggagcag gcggacattg
     4561 acgtgcatca ggatggcgga ggtacggttg aacacgccag attgaaagaa gactttaaaa
     4621 agtccgccgt gtatcaggcg ggtaagctgt actttaacga agtggaagag attgagagaa
     4681 gcagccgaaa ctgggaaacc tactcgctgg aaacacgctt tgaaatacag tatcagatcg
     4741 cttgcgagga gtcgctggac aacctgacag gcacaaaggg ggggatcata aaaccggaac
     4801 cactggtact ggacgagcgt ttttaccgca aggcgatgca aagaatcagc ttttacgcgc
     4861 tagataacct gaaacgcttc ttcccgaaac tgacaggtat tcgggagttc atacgcagtg
     4921 acgcctatct tggtaagctg aaaatcaccg tcagcgtacc gcagtcactg gatttcacca
     4981 ccgtaccggc aaaagataag ctgcacctac tggaaaacgt tttgctgcgt atctcagaga
     5041 atgtgcgtcg caatgaccag aaggtaaaag gcacgtaccg atttatcagc cagccggtga
     5101 aagaggtgat taaagattac agtttgcata ttgacccgtc ggtagccatt aaccagaaaa
     5161 tcaccgccgc tcccaccatt ggtaaaaaat ggtacgtgta cgataatgcg atactaaatc
     5221 agcttgagca tcgtctgata aaaatgctgg aagcattcat gccgaagcta aaagcgcgtt
     5281 atgacgatat ttacgtactg cgtaacgacg agcagtcaac gcgctttaag ctcacggagt
     5341 tcggcggcgt gcgtgggttt atgccagatt tcatcatgat actgacgcgc cattcagaca
     5401 acacttactg gcaggtgttc cttgaaccga agggggatga ccgtctgctg gatgacgcat
     5461 ggaaagaacg gatgctcgaa acactgaatg acagggagcg cattgtaatt gatgaaaatg
     5521 agcacgtcag actggttggg attaaattct ttgccaatag ccagatggac gtttttgtca
     5581 gcgacatgca gaacaagctg aatgatggag aatcgctcga aacctcctcg ctctccctac
     5641 cactgtaagt cacgacaata aaataacgga gcattacgct ccgttatttt attgttatct
     5701 cgaactacct cccagggagg tgatgattgc tcctgtaatg gttgcattgt ttgttcttgc
     5761 tgttgcgaat cattagtttt gaatggtggt taaaaaccgt tcgctatgtt tatgcctggg
     5821 gggggatgag ggggaaaaga ttcaaggatc ctcttgtgat cctttttttc tgcgcgtaat
     5881 ctgcagcctg taaacgaaaa aaccaccctg gcaggtggtt tttcgaaggt tagctaatcc
     5941 tggcagatta tctaaccggg taactggctt ggaggagcgc agtcaccaaa atctgttctt
     6001 tcagtttagc cttaacaggt gcataacttc aagacaaact cctctaaatc agttaccagt
     6061 ggctgctgcc agtggcgata agtcgtgtct taccgggttg gactcaagac gatagttacc
     6121 ggataaggcg cagcggtcgg gctgaacggg gggttcgtgc acacagccca gcttggagcg
     6181 aacgacctac accgaaccga gataccaaca gcgtgagcta tgagaaagcg ccacgcttcc
     6241 cgaagggaga aaggcggaca ggtatccggt aagcggcagg gtcggaacag gagagcgcac
     6301 gagggagctt ccagggggaa acgcctggta tctttatagt cctgtcgggt ttcgccgact
     6361 ctgacttgag cgtcgatttt tgtgatgctc gtcagggggg cggagcctat ggaaaaacgc
     6421 cagcggcgcg gcctttttcc ggttcctgct cttttgctca catgttcttt ccggccttat
     6481 cccctgattc ggtggataat ctaattactg tctttgcgtg agttgatacc gctcgccgca
     6541 gccgaacgac cgagcgtagc gagtcagtga gcgaggaagc ggaatatctc ctgtatcgca
     6601 tattctgctg acgcgccggt gctgcctttt ttctcctgcc acatgaagca cttcactgat
     6661 tttcgcaatc gtggcaacat agtaagccag tatacactcc gctatcgcta cgtgactggg
     6721 tcatggctgc gccccgacac ccgctaaaac cccctgacgc
//
