LOCUS       NZ_CP149227              713 bp    DNA     circular CON 05-APR-2024
DEFINITION  Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain
            Z1323HSL0018 plasmid pZ1323HSL0018-7, complete sequence.
ACCESSION   NZ_CP149227
VERSION     NZ_CP149227.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40440218
            Assembly: GCF_037837055.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
  ORGANISM  Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 713)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Complete genome sequence of Salmonella enterica subsp. enterica
            serovar 4,[5],12:i:- isolated from humans and pigs
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 713)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-MAR-2024) Division of biotechnology, Jeonbuk National
            University, kobongro, Iksan 54596, South Korea
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.4.9
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 94X
            Sequencing Technology :: Illumina NovaSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037837055.1-RS_2024_04_05
            Annotation Date                   :: 04/05/2024 21:19:28
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,054
            CDSs (total)                      :: 4,931
            Genes (coding)                    :: 4,795
            CDSs (with protein)               :: 4,795
            Genes (RNA)                       :: 123
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 136
            CDSs (without protein)            :: 136
            Pseudo Genes (ambiguous residues) :: 0 of 136
            Pseudo Genes (frameshifted)       :: 35 of 136
            Pseudo Genes (incomplete)         :: 113 of 136
            Pseudo Genes (internal stop)      :: 22 of 136
            Pseudo Genes (multiple problems)  :: 31 of 136
            Pseudo Genes (short protein)      :: 1 of 136
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP149227.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..713
                     /organism="Salmonella enterica subsp. enterica serovar
                     4,[5],12:i:-"
                     /mol_type="genomic DNA"
                     /strain="Z1323HSL0018"
                     /serovar="4,[5],12:i:-"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:440524"
                     /plasmid="pZ1323HSL0018-7"
                     /geo_loc_name="South Korea"
                     /collection_date="2023-04-21"
     gene            complement(110..568)
                     /gene="tnpA"
                     /locus_tag="WIY59_RS25270"
                     /old_locus_tag="WIY59_25270"
     CDS             complement(110..568)
                     /gene="tnpA"
                     /locus_tag="WIY59_RS25270"
                     /old_locus_tag="WIY59_25270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459923.1"
                     /GO_function="GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /GO_process="GO:0006313 - DNA transposition [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS200/IS605-like element IS200F family
                     transposase"
                     /protein_id="WP_000502119.1"
                     /translation="MGDEKSLAHTRWNCKYHIVFAPKYRRQAFYGEKRRAVGSILRKLC
                     EWKNVRILEAECCADHIHMLLEIPPKMSVSSFMGYLKGKSSLMLYEQFGDLKFKYRNRE
                     FWCRGYYVDTVGKNTAKIQDYIKHQLEEDKMGEQLSIPYPGSPFTGRK"
                     /name="tnpA"
ORIGIN
        1 aataaatatc ctccggcata gccggaggtt tttcagatgc gcctataagg ctctcttacc
       61 agccgcgccc taacaggcgc atacgatctg acatttgcat caaacttcgt tacttacggc
      121 ccgtaaacgg gctgcccgga tacgggatcg ataattgctc acccatttta tcctcttcaa
      181 gctggtgctt tatgtagtcc tgtatcttcg ccgtgttctt acccaccgta tcgacatagt
      241 accctctgca ccagaactcc ctgttcctgt atttgaattt tagatcccca aactgctcgt
      301 aaagcatcag actactttta cccttcagat atcccatgaa actcgacaca ctcatcttcg
      361 gcgggatctc cagaagcatg tgaatatgat ctgcacaaca ttctgcttcc agaattcgta
      421 cgtttttcca ttcacacaat tttcttaata tgctgcctac tgccctacgc ttctctccat
      481 agaacgcttg tcttcggtat ttgggcgcga aaactatgtg atatttacag ttccatcggg
      541 tgtgcgctaa gctcttttcg tcccccattg ggaccccctt ttgatttctt gttgaacttt
      601 tgcagttgcc agaccgcaag atgttttaac aaatcaaaag gggttttaat aactggctta
      661 aagctgaaag ctttccggaa cccccagcct agctgggggt tttccataga caa
//
