LOCUS       NZ_CP149224             3566 bp    DNA     circular CON 05-APR-2024
DEFINITION  Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain
            Z1323HSL0018 plasmid pZ1323HSL0018-4, complete sequence.
ACCESSION   NZ_CP149224
VERSION     NZ_CP149224.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40440218
            Assembly: GCF_037837055.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
  ORGANISM  Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3566)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Complete genome sequence of Salmonella enterica subsp. enterica
            serovar 4,[5],12:i:- isolated from humans and pigs
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3566)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-MAR-2024) Division of biotechnology, Jeonbuk National
            University, kobongro, Iksan 54596, South Korea
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.4.9
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 94X
            Sequencing Technology :: Illumina NovaSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037837055.1-RS_2024_04_05
            Annotation Date                   :: 04/05/2024 21:19:28
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,054
            CDSs (total)                      :: 4,931
            Genes (coding)                    :: 4,795
            CDSs (with protein)               :: 4,795
            Genes (RNA)                       :: 123
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 136
            CDSs (without protein)            :: 136
            Pseudo Genes (ambiguous residues) :: 0 of 136
            Pseudo Genes (frameshifted)       :: 35 of 136
            Pseudo Genes (incomplete)         :: 113 of 136
            Pseudo Genes (internal stop)      :: 22 of 136
            Pseudo Genes (multiple problems)  :: 31 of 136
            Pseudo Genes (short protein)      :: 1 of 136
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP149224.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3566
                     /organism="Salmonella enterica subsp. enterica serovar
                     4,[5],12:i:-"
                     /mol_type="genomic DNA"
                     /strain="Z1323HSL0018"
                     /serovar="4,[5],12:i:-"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:440524"
                     /plasmid="pZ1323HSL0018-4"
                     /geo_loc_name="South Korea"
                     /collection_date="2023-04-21"
     gene            complement(284..478)
                     /locus_tag="WIY59_RS25200"
                     /old_locus_tag="WIY59_25200"
     CDS             complement(284..478)
                     /locus_tag="WIY59_RS25200"
                     /old_locus_tag="WIY59_25200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001041624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_001712891.1"
                     /translation="MNKQQQTVLNMAGFIKSQSLTLLEKLDALDADEQAAMCEKLHELA
                     EELQNSIQTRFEAENSTGV"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            763..1086
                     /gene="mobA"
                     /locus_tag="WIY59_RS25205"
                     /old_locus_tag="WIY59_25205"
     CDS             763..1086
                     /gene="mobA"
                     /locus_tag="WIY59_RS25205"
                     /old_locus_tag="WIY59_25205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_052604.1"
                     /GO_process="GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid mobilization protein MobA"
                     /protein_id="WP_000166966.1"
                     /translation="MTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLRA
                     AALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDREYAEVLIAITEYHRALLSRL
                     MAD"
                     /name="mobA"
     gene            complement(1376..1990)
                     /locus_tag="WIY59_RS25210"
                     /old_locus_tag="WIY59_25210"
     CDS             complement(1376..1990)
                     /locus_tag="WIY59_RS25210"
                     /old_locus_tag="WIY59_25210"
                     /inference="COORDINATES: protein motif:HMM:NF025107.4"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_024171902.1"
                     /translation="MSTKNAQKEQKKESLITTHWGDDATIHGWTAIPNSLLMLQGDLGI
                     GSTEMCILLNILMHQWPESGKSISFPSIGTIASRIGVSKRTIQRGVSNLEALGILTRYQ
                     STRNDPLTNGANIFDSTPLKEYLNKKAKGITISNSNKKKERKKTGITPNIKLPHICQKC
                     FKTKATSHEEIVKFFGVRKTMAGEIINSYCKECRASEKDLF"
                     /name="helix-turn-helix domain-containing protein"
     gene            2311..3036
                     /locus_tag="WIY59_RS25215"
                     /old_locus_tag="WIY59_25215"
     CDS             2311..3036
                     /locus_tag="WIY59_RS25215"
                     /old_locus_tag="WIY59_25215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001427890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NYN domain-containing protein"
                     /protein_id="WP_061316130.1"
                     /translation="MASMETEQQPQQTTEQIEVKTKRVQCFIDGYNLYHAIEETGNKAL
                     HWVDLKSLCKRYLPKNASIDNVFWFSAKPSHLSRAINENYQNYASALTECGVDVIGGRF
                     KKKNVTCEADHGCGGVFHKHEEKESDVNLAISLVSGACNDEYDIAIIITADSDLCPPIK
                     YVRERFPNKELWLVAPPGRIRRATDLCSLSSRSMEINNGALRACCMRDEFYKGGVLVAR
                     RPQEWRAVANTKQRRARSR"
                     /name="NYN domain-containing protein"
     gene            complement(3241..3354)
                     /locus_tag="WIY59_RS25220"
                     /old_locus_tag="WIY59_25220"
     CDS             complement(3241..3354)
                     /locus_tag="WIY59_RS25220"
                     /old_locus_tag="WIY59_25220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001422066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001712890.1"
                     /translation="MHEPPVQPDRCALSGNYRLESNPERHDLTPLAAAIGN"
                     /name="hypothetical protein"
     Typing          514..754
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="98.765"
                     /coverage="100.0"
                     /evalue="2.15e-118"
     Typing          complement(2..241)
                     /name="rep_cluster_2350"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="89.3"
                     /coverage="94.0"
                     /evalue="4.33e-79"
     Typing          complement(3246..3566)
                     /name="rep_cluster_2370"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="97.826"
                     /coverage="94.0"
                     /evalue="6.38e-156"
     Typing          764..1083
                     /name="MOBF"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="99.065"
                     /coverage="100.0"
                     /evalue="3.1e-62"
ORIGIN
        1 gatttttgtg atgctcgtca ggggggcgga gcctatggaa aaacgccacc ggtgcggcct
       61 ttttcgggct cttgtttttt gctcacatgt ttcttttggc gttatcccct gattctgtgg
      121 ataacctcat taccgtcttt gagtgagctg ataccgctcg ccgcagtcga acgaccgagc
      181 gtagcgagtc agtgagcgag gaagcggaag agtgcctgat gtagcatttt ctccttacgc
      241 acaggtatac cattctgtat cctatctggt gccggatata ctgttatacc ccggtgctat
      301 tttccgcttc aaagcgtgtc tgtatgctgt tctggagttc ttccgcgagt tcgtgcagct
      361 tctcacacat ggcggcctgt tcgtcggcat cgagtgcgtc cagcttttcg agcagtgtca
      421 ggctctggct ttttatgaat cccgccatgt tgagtacagt ttgctgctgc ttgttcatct
      481 ttctgttttc tccgttctgt ctgtcatctg cgttatgtga ttatatcgcg taccactttt
      541 cgacagtttt gccgccagta ttctgccgtc tgactctttg acgggcattt ctgcctgaca
      601 atactgtcac tgccaaaaaa ctgccgtgcc tttgtcggta attcgaactt gctgacagga
      661 caggatgtgt aattgttata ccgcgcatac atgcgcgcta ttacaattac cctggtcagg
      721 gcttcgcccc gacaccccat gtcagatacg gagccatgtt ttatgacaaa acgaagtgga
      781 agtaatacgc gcaggcgggc tatcagtcgc cctgttcgtc tgacggcaga agaagaccag
      841 gaaatcagaa aaagggctgc tgaatgcggc aagaccgttt ccggtttttt acgggcggca
      901 gctctcggta agaaagttaa ctcactgact gatgaccggg tgctgaaaga agttatgcga
      961 ctgggggcgt tgcagaaaaa actctttatc gacggcaagc gtgtcgggga cagggagtat
     1021 gcggaggtgc tgatcgctat tacggagtat caccgtgccc tgttatccag gcttatggca
     1081 gattagcttc ccggagagaa actgtcgaaa acagacggta tgaacgccgt aagcccccaa
     1141 accgatcgcc attcactttc atgcatagct atgcagtgag ctgaaagcga tcctgacgca
     1201 tttttccggt ttaccccggg gaaaacatct ctttttgcgg tgtctgcgtc agaatcgcgt
     1261 tcagcgcgtt ttggcggtgc gcgtaatgag acgttatggt aaatgggagc gttagaaaca
     1321 gtcccattta cttgagtggg gagggggggg ggccatataa aaaatggtca actgtttaaa
     1381 atagatcttt ttcagaagct cggcattctt tgcaatatga atttattatt tccccagcca
     1441 ttgtttttcg cacaccaaaa aatttaacaa tttcttcgtg gctggttgct ttagttttaa
     1501 aacatttttg gcaaatgtgt ggtaatttta tgttgggtgt aattccggtt ttctttcttt
     1561 ctttcttttt gttgctgttg ctaattgtta tgcctttagc ttttttgttt aaatattctt
     1621 ttagaggggt tgagtcgaat atattagcgc cattggttag agggtcattc cttgttgatt
     1681 ggtatctagt taatatcccc aatgcctcta ggttactaac cccgcgttga attgttcttt
     1741 tagatacacc tattcttgat gcaatggtac caattgacgg aaaagatatt gacttccctg
     1801 actcaggcca ttgatgcatc aatatattca gcagaataca catctcagta ctcccaatac
     1861 caagatcacc ttgcagcata aggaggctat ttggtatagc cgtccaccca tgtatggttg
     1921 catcatctcc ccagtgagta gtgattaatg actctttttt ttgttctttc tgtgcgtttt
     1981 ttgtgctcat agatgctttt ctcgcgaaaa aaaaatcaaa atgtgaacag ttactaccta
     2041 actactctta atataagagt agttaggtag taacatgtat cttttaggat gacataaatg
     2101 tcatccattt gctctttttt tatatagaac ttaagttaag tccactacct aagagttatg
     2161 ctcttagtgg ctatccaagt cgaggcttgg aagcgcattg tacaaaattc ttcctgtatt
     2221 ggatgcgtcc atacagtggt ctgttaactg cggttaagag acgcaaaaag gcctgcatat
     2281 gcaggccttt ttgctatcta gaggtcaaaa atggcaagta tggaaacaga gcagcaacca
     2341 caacaaacta ctgagcaaat cgaagtaaaa acaaagagag tgcagtgctt tattgatggg
     2401 tataatttat atcatgcaat tgaagagact ggtaataaag ctcttcattg ggttgatctt
     2461 aaatctttat gcaagagata ccttcctaaa aatgcatcta ttgataatgt tttttggttt
     2521 tccgctaagc catcacattt atcaagagcc ataaatgaaa attatcaaaa ttacgccagc
     2581 gctttaaccg aatgtggtgt tgatgttatc ggtggacgtt ttaaaaaaaa gaatgtaacg
     2641 tgcgaagctg atcatggatg tggtggagtt ttccataagc atgaagaaaa agagtccgat
     2701 gttaatttgg ctataagtct agtgtctggt gcgtgtaatg atgagtatga tatagccatt
     2761 attatcactg cggattctga cttatgcccc cctattaaat acgtaagaga gcgattccct
     2821 aataaagagc tttggcttgt agctcctccg gggagaatca ggcgagcgac agatctctgc
     2881 tctctgtcat cgagaagtat ggagatcaat aatggtgctt tgagagcctg ctgtatgcgt
     2941 gatgagttct acaaaggtgg agtacttgta gccagaaggc ctcaggaatg gcgagctgtt
     3001 gccaatacca agcaaagaag ggctagaagt cgttaggcct tgttgacgca gctagcgcaa
     3061 ggagattaat ctaactaggt tgaaaacgaa aaaaccgcct tggcgggcgg tttttcgaag
     3121 gttcatagag ttggcgctct ttgaaccgag gtaactggct tggaggagca cagtcgccaa
     3181 aacttgttct ttcagtttag ccttatcaga tgcataactt caagactcaa ctcctctaaa
     3241 tcagttacca atggctgctg ccagtggcgt taagtcgtgt ctttccgggt tggactcaag
     3301 acgatagtta ccggataagg cgcagcggtc gggctgaacg gggggttcgt gcacacagcc
     3361 cagcttggag cgaacgacct acaccgaact gagataccaa cagcgtgagc tatgagaaag
     3421 cgccacgctt cccgaaggga gaaaggcgga caggtatccg gtaagcggca gggtcggaac
     3481 aggagagcgc acgagggagc ttccaggggg aaacgcctgg tatctttata gtcctgtcgg
     3541 gtttcgccac ctctgacttg agcgtc
//
