LOCUS       NZ_CP148831             4903 bp    DNA     circular CON 05-APR-2024
DEFINITION  Salmonella enterica subsp. enterica serovar Infantis strain
            Z1323CSL0014 plasmid pZ1323CSL0014-4, complete sequence.
ACCESSION   NZ_CP148831
VERSION     NZ_CP148831.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40424061
            Assembly: GCF_037779835.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Infantis
  ORGANISM  Salmonella enterica subsp. enterica serovar Infantis
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4903)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Complete genome sequence of Salmonella enterica subsp. enterica
            serovar Infantis isolated from humans, companion and industrial
            animals
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4903)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-MAR-2024) Division of biotechnology, Jeonbuk National
            University, kobongro, Iksan 54596, South Korea
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.4.9
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 135X
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037779835.1-RS_2024_04_05
            Annotation Date                   :: 04/05/2024 20:55:17
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,926
            CDSs (total)                      :: 4,807
            Genes (coding)                    :: 4,632
            CDSs (with protein)               :: 4,632
            Genes (RNA)                       :: 119
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 175
            CDSs (without protein)            :: 175
            Pseudo Genes (ambiguous residues) :: 0 of 175
            Pseudo Genes (frameshifted)       :: 80 of 175
            Pseudo Genes (incomplete)         :: 125 of 175
            Pseudo Genes (internal stop)      :: 42 of 175
            Pseudo Genes (multiple problems)  :: 63 of 175
            Pseudo Genes (short protein)      :: 1 of 175
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP148831.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4903
                     /organism="Salmonella enterica subsp. enterica serovar
                     Infantis"
                     /mol_type="genomic DNA"
                     /strain="Z1323CSL0014"
                     /serovar="Infantis"
                     /host="Chicken"
                     /sub_species="enterica"
                     /db_xref="taxon:595"
                     /plasmid="pZ1323CSL0014-4"
                     /geo_loc_name="South Korea"
                     /collection_date="2023-02-27"
     gene            complement(35..160)
                     /locus_tag="WI205_RS24585"
                     /old_locus_tag="WI205_24585"
     CDS             complement(35..160)
                     /locus_tag="WI205_RS24585"
                     /old_locus_tag="WI205_24585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000405108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000405108.1"
                     /translation="MEINKEQASEIIKLIEQALLDGFDDEILVSLHESLTKFVSE"
                     /name="hypothetical protein"
     gene            complement(160..438)
                     /locus_tag="WI205_RS24590"
                     /old_locus_tag="WI205_24590"
     CDS             complement(160..438)
                     /locus_tag="WI205_RS24590"
                     /old_locus_tag="WI205_24590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001748038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001748038.1"
                     /translation="MKKFKGTPGPWSGKDVRICRQDRAGLQLGFIMTHDENRVAECEAN
                     AHLIAAAPELLEALQLLLNSWSNGSSKDISNAERKARSAISKALGEE"
                     /name="hypothetical protein"
     gene            complement(472..1191)
                     /locus_tag="WI205_RS24595"
                     /old_locus_tag="WI205_24595"
     CDS             complement(472..1191)
                     /locus_tag="WI205_RS24595"
                     /old_locus_tag="WI205_24595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016023187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pentapeptide repeat-containing protein"
                     /protein_id="WP_075322247.1"
                     /translation="MNSADLSKILEEHKVWITSMRESGSRANLRDANLRDANLRGANLR
                     DANLRGADLRGANLRDANLRDANLCGANLCGANLRGANLRDADLRDANLRDANLCGANL
                     CGANLRGANLRDADLRDANLCGADLRGANLRDANLRGADLRGANLRDANLPDLTFVILG
                     EKYFISITNGEYVRAGCQNHTVEEWRKYSKQEIAEMDGRKALKFYPRLLDIIDFYIGKG
                     ERPDWLTSKEYADEVTE"
                     /name="pentapeptide repeat-containing protein"
     gene            complement(1265..>1393)
                     /locus_tag="WI205_RS24600"
                     /old_locus_tag="WI205_24600"
                     /pseudo=""
     CDS             complement(1265..>1393)
                     /locus_tag="WI205_RS24600"
                     /old_locus_tag="WI205_24600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016063037.1"
                     /note="frameshifted; incomplete; partial in the middle of a
                     contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="regulator"
                     /name="regulator"
     gene            complement(1395..1928)
                     /locus_tag="WI205_RS24605"
                     /old_locus_tag="WI205_24605"
     CDS             complement(1395..1928)
                     /locus_tag="WI205_RS24605"
                     /old_locus_tag="WI205_24605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001535909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="WP_058649971.1"
                     /translation="MDLTQVSVREILHYNPVSGDFYWKPRAKHLFADNRAALTWNKKYP
                     GKKAGSPDNKGYLRINIGGKKFKSHRLAWLYVHGYWPDVIDHINGVKDDNRISNLRSVS
                     FKENMKNMPLKSSSSTGVTGVEARKEHGFYVASITVDGKRKYLGSFKLLDDAKQARKEA
                     NALYGFHENHGRSQ"
                     /name="HNH endonuclease"
     gene            complement(2757..3509)
                     /locus_tag="WI205_RS24610"
                     /old_locus_tag="WI205_24610"
     CDS             complement(2757..3509)
                     /locus_tag="WI205_RS24610"
                     /old_locus_tag="WI205_24610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015705908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LexA family transcriptional regulator"
                     /protein_id="WP_000935320.1"
                     /translation="MLNTKQASFSNLHIYRIAKECETQGMENKEIRKANLEALYEERKR
                     STGMTKAQFAELIDTSPAALSQLLGENPNRNIGDKLARKIENALGLSFGWLDVLHSKEN
                     TGNVAFRGMNDTKGSYPVISWISAGQWMEAVEPYHRRSIDRWYDTTVVCSEDSFWLDVK
                     GDSMTSPVGLSIPEGAAILVDPEVEPRNGKLVVAKLDGDNEATFKKLVIDAGRRFLKPL
                     NPQYPMQEINGNCRIIGVVVDAKILNLP"
                     /name="LexA family transcriptional regulator"
     gene            3550..3783
                     /locus_tag="WI205_RS24615"
                     /old_locus_tag="WI205_24615"
     CDS             3550..3783
                     /locus_tag="WI205_RS24615"
                     /old_locus_tag="WI205_24615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000102594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001058406.1"
                     /translation="MNNELLRWRKDATSAEWVRLAELANTTVGYLDQIAYGYRRASPEK
                     ALAIEVASKVFKKHMPVLKESLVFATTRNSAA"
                     /name="hypothetical protein"
     gene            3934..4230
                     /locus_tag="WI205_RS24620"
                     /old_locus_tag="WI205_24620"
     CDS             3934..4230
                     /locus_tag="WI205_RS24620"
                     /old_locus_tag="WI205_24620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309214.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CII family transcriptional regulator"
                     /protein_id="WP_000189606.1"
                     /translation="MTQASYSKPTQREIDRAETDLLINLSTLTQRGLAKMIGCHESKIS
                     RTDWRFIASVLCAFGMASDISPISRAFKYALDEITKKKSPAATEDFKQIDMQF"
                     /name="CII family transcriptional regulator"
     gene            4263..4409
                     /locus_tag="WI205_RS24625"
                     /old_locus_tag="WI205_24625"
     CDS             4263..4409
                     /locus_tag="WI205_RS24625"
                     /old_locus_tag="WI205_24625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2740 family protein"
                     /protein_id="WP_001125981.1"
                     /translation="MPKQLSPDQDKLHKNILRDRFLSSFKQPGRFRAELEKVKLILKRK
                     GHE"
                     /name="DUF2740 family protein"
     gene            4402..>4902
                     /locus_tag="WI205_RS24630"
                     /old_locus_tag="WI205_24630"
                     /pseudo=""
     CDS             4402..>4902
                     /locus_tag="WI205_RS24630"
                     /old_locus_tag="WI205_24630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001531205.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="replication protein"
                     /name="replication protein"
ORIGIN
        1 cacaatgacc actattaaaa tggtcattag gtgcttattc gctgacaaat ttggtaagac
       61 tttcgtgtag cgaaaccaaa atttcatcat caaacccatc aagtaatgct tgttcgataa
      121 gtttgataat ttctgatgct tgctctttat ttatttccat cactcctccc caagagcctt
      181 gctgatggct gagcgagctt ttctctcagc gtttgaaata tctttagaac taccatttga
      241 ccaggagttg agaagcaatt gtagcgcttc caataactcc ggagctgctg ctatcaagtg
      301 tgcattggcc tcacattcag ctacgcgatt ttcgtcatgg gtcatgataa aaccaagctg
      361 caacccagct ctatcttgcc tgcaaatgcg tacatccttt ccgctccaag gacctggcgt
      421 acctttaaac tttttcatat tcacctctgt gtctcgctgc caaaaatacg cttactcagt
      481 tacttcatct gcatattctt tacttgttaa ccaatccggg cgttcacctt taccaatata
      541 gaagtcgata atgtccagaa gacgtggata aaatttaaga gctttacgac catccatctc
      601 agcaatttcc tgcttactat attttctcca ttcctcaact gtgtggttct ggcatcctgc
      661 tcgtacatat tcaccgttcg ttatacttat gaagtatttc tcacccagga ttacgaaagt
      721 tagatcaggc aggttggcat cgcgcaggtt ggcaccgcgc aggtcggcac cgcgcaggtt
      781 ggcatcgcgc aggttggcac cgcgcaggtc ggcaccgcac aggttggcat cgcgcaggtc
      841 ggcatcgcgc aggttggcac cgcgcaggtt ggcaccgcac aggttggcac cgcacaggtt
      901 ggcatcgcgc aggttggcat cgcgcaggtc ggcatcgcgc aggttggcac cgcgcaggtt
      961 ggcaccgcac aggttggcac cgcacaggtt ggcatcgcgc aggttggcat cgcgcaggtt
     1021 ggcaccgcgc aggtcggcac cgcgcaggtt ggcatcgcgc aggttggcac cgcgcaggtt
     1081 ggcatcgcgc aggttggcat cgcgcaggtt ggctctcgat ccgctctcac gcattgaggt
     1141 aatccacacc ttgtgctctt caagaatctt cgataaatct gctgaattca tgttgttatt
     1201 ccttaaattt tggcaataaa aaaggccgca ttgcgacctg attagatgat tgctgcctga
     1261 ataattatct agcggtaatt tgcccacact tacgatgacc agccgcgtaa agtgctacgt
     1321 ctggaagaag tacagatcct ccttcaactt ccttctgacg cgttccggca agcgaaatgg
     1381 ctcttgaaac acgtttactg gctccgtcca tgattttcat gaaagccata tagtgcattg
     1441 gcttctttcc ttgcttgttt ggcatcatct aaaagtttga atgagcctag gtattttcgt
     1501 tttccatcca cagttatcga tgcaacataa aacccatgct cttttcttgc ttcaacacct
     1561 gtaactccag ttgatgaaga tgattttaaa ggcatgtttt tcatattctc tttgaaagaa
     1621 acgcttctta aattggagat tctgttgtca tccttaacgc cgtttatgtg atcaatcaca
     1681 tcaggccagt agccatgcac gtaaagccat gcaagtctgt gagacttaaa ttttttacct
     1741 ccaatattta ttctcagata acccttgttg tcaggtgatc cagccttttt acctggatac
     1801 ttcttgttcc acgtcaaggc agctctgtta tccgcaaaca aatgctttgc tctcggcttc
     1861 caataaaagt caccactcac aggattgtaa tgaagaatct cccttacaga cacttgagta
     1921 agatccactt aaacctccta acaaaaacac ttcaataacc ctccggttat ggaaatgttc
     1981 ttttgtagtg agcagcattg ccgttcatcc tgaacccgcc taggcgggct atatgtgttt
     2041 ccacttcttg cgaagcctaa ttgaactaat gtacgaatca gacagtccat agatggctgc
     2101 tattttcctg ttactcagcg tggagcttcg tatttcaaga acatcttctg cggtaagttt
     2161 cgcggaaccg tttctctctc cagagacgtg atttcctctc cctttaattt ccatatccct
     2221 tacgttttcc aactgagtac caagcaccaa atgctctggg ttgatgcatc gcgggttatc
     2281 acacatatgc agcactacac gtcctttaat gctctcaata gagacaccga ctgattcgca
     2341 gtaggctttc ctgtgaagcc ttatcgccac tgtcttaccg ttgattcgag ttgaagtggt
     2401 accgtaattt tgtttttggt tatgctctat gcaatcactt aacatgttga tctctctaaa
     2461 aagaaaacat caggttaagc aatcccgcat attggaaccg tccattggct cgccatgggg
     2521 ccgacgcatg gtttactgtc gcgccgttcg actgaccgaa acgatgtgct gtctcgatgg
     2581 gttaaattta gcgtgatgct aaatcattgg caatagcaaa atgctaaatt actggcgcgt
     2641 gaagtttagc tttttgatta ataaaggaat taatttttag cattgaggtg gtgtagaaaa
     2701 cgaaaagcaa aaaaaagccc gctcattggc gggcttaggg ggaatatcgt gagtctttac
     2761 ggcaagttga gaatcttcgc gtctactaca acgccaatga tccggcaatt accatttatt
     2821 tcttgcatgg gatactgcgg gttaagcggt ttaaggaatc ggcggccagc gtctatgaca
     2881 agcttcttga aagtggcctc attgtctccg tcaagcttag cgacaacaag ctttccgttc
     2941 cgtggctcga cttccggatc aacaagaatt gccgcaccct ctggaatact caggccaaca
     3001 ggggatgtca tagagtcccc cttaacatcc agccagaatg aatcctctga gcacaccaca
     3061 gtggtgtcat accagcgatc tattgatctg cgatgataag gttctacagc ttccatccat
     3121 tgccccgcgc ttatccaact gattacagga taacttcctt tcgtgtcgtt catccctcga
     3181 aatgcaacgt tacccgtgtt ttctttggag tgcaaaacat ccagccaacc gaatgacaga
     3241 cccaaagcat tttcaatttt tctagccagc ttatccccga tgttgcgatt cgggttttct
     3301 cctagaagct gactcagggc ggcaggactg gtgtctatga gttcagcgaa ctgtgcctta
     3361 gtcattccag tcgaacgttt ccgctcttcg tacaaagcct ctaggttggc ttttctgatt
     3421 tctttgtttt ccattccctg agtctcgcat tctttagcaa tgcgataaat gtgcaaattg
     3481 ctaaatgatg cttgcttagt atttagcata acgctaaact ccaattgtaa cgttaacccg
     3541 gagcaaccta tgaacaacga attactccgc tggcgaaagg atgcgacttc cgctgagtgg
     3601 gtgcggttgg cagaactagc caacacaacg gttggctatt tagaccagat tgcttacgga
     3661 taccgcaggg cttctccaga gaaggcactg gcgatcgaag tggcaagcaa ggttttcaaa
     3721 aagcacatgc cagtactgaa agaaagcctg gtctttgcga ccacccgtaa cagcgcagca
     3781 tgaaccctgt cgccttcagg cggcaagtaa ccagtgagca acttttgata accgaacggc
     3841 ccggtatatg gtcgggtgcc cggcgtggtc aaggatgact gtcaatggtg cacgataaaa
     3901 acccaaatta tttacctatg gagatagtaa gaaatgacac aagcaagtta cagcaagcca
     3961 acacagcgag aaattgatcg cgctgaaact gatttactca tcaacctgtc aacgcttacc
     4021 cagcgcggtc tggcaaagat gattggctgt catgaatcta agataagcag aacggactgg
     4081 agatttattg cttcggtctt gtgtgctttc ggaatggcat cagacatcag tccgattagc
     4141 agggctttta agtatgcgct tgatgaaatc acaaagaaaa aatccccggc tgccaccgag
     4201 gattttaagc aaattgatat gcaattctga gggaattact ggatcaatcc acaggagtaa
     4261 ttatgccaaa acaactcagt cctgaccagg acaaattaca caaaaacata ctacgtgatc
     4321 ggttcttatc cagcttcaaa cagcctggtc gatttcgggc tgagttggag aaagtgaagc
     4381 taatactgaa gaggaaaggt catgagtaat cttgcaacag ttacaccgat aaaacctcat
     4441 ctggaggttg tggagcatcg cgtggcagaa ctcgacgatg gctacacccg gactgcaaat
     4501 acactgctgg aagctgtcat gctttctggg cttactcaac atcagctact gattgttatg
     4561 gctgtgtggc gcaagacata cggttataac aaaaaaatag attggatcgg aaatgaacag
     4621 ttcgctgaac tcactggcat ggcgccaacc aaatgttcta ccgccaaaaa cgagcttatc
     4681 agaatggggg ttctcactca ggtggggcgt caggttggta tgaataaaaa tatttccgag
     4741 tggaagacga aggttaacgg attcggtaaa acatttacca gatcggtaaa actaaccttc
     4801 accaaatcgg taaaaaccaa tttaccgaat cagtcaaaca caaaagacaa tatacaaaag
     4861 acaataaata caaatacccc cttaccccct aacggtggcg gca
//
