LOCUS       NZ_CP148515             2089 bp    DNA     circular CON 05-APR-2024
DEFINITION  Escherichia coli strain Z1323CEC0001 plasmid pZ1323CEC0001-9,
            complete sequence.
ACCESSION   NZ_CP148515
VERSION     NZ_CP148515.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40441568
            Assembly: GCF_037576255.1
KEYWORDS    RefSeq.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 2089)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Complete genome sequence of Escherichia coli isolated from humans,
            companion animals, industrial animals and wild animals
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2089)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-MAR-2024) Division of biotechnology, Jeonbuk National
            University, kobongro, Iksan 54596, South Korea
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.4.9
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 115X
            Sequencing Technology :: Illumina NovaSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037576255.1-RS_2024_04_05
            Annotation Date                   :: 04/05/2024 20:25:33
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,818
            CDSs (total)                      :: 5,691
            Genes (coding)                    :: 5,374
            CDSs (with protein)               :: 5,374
            Genes (RNA)                       :: 127
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 90
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 317
            CDSs (without protein)            :: 317
            Pseudo Genes (ambiguous residues) :: 0 of 317
            Pseudo Genes (frameshifted)       :: 107 of 317
            Pseudo Genes (incomplete)         :: 205 of 317
            Pseudo Genes (internal stop)      :: 51 of 317
            Pseudo Genes (multiple problems)  :: 44 of 317
            Pseudo Genes (short protein)      :: 4 of 317
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP148515.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2089
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /strain="Z1323CEC0001"
                     /host="Chicken"
                     /db_xref="taxon:562"
                     /plasmid="pZ1323CEC0001-9"
                     /geo_loc_name="South Korea"
                     /collection_date="2023-02-23"
     gene            join(1979..2089,1..156)
                     /locus_tag="WHU28_RS29065"
                     /old_locus_tag="WHU28_29060"
     CDS             join(1979..2089,1..156)
                     /locus_tag="WHU28_RS29065"
                     /old_locus_tag="WHU28_29060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001024536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001024536.1"
                     /translation="MNINIEYLNGNKTIGLFFLRSEAVIPDRFKNLILLIDGLSFGTFG
                     FHPHEGFEDELILYIQKTNERVKTLFVKIDLNGIKFGFLRTHS"
                     /name="hypothetical protein"
     gene            1010..1975
                     /locus_tag="WHU28_RS29070"
                     /old_locus_tag="WHU28_29065"
     CDS             1010..1975
                     /locus_tag="WHU28_RS29070"
                     /old_locus_tag="WHU28_29065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012421200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_097334053.1"
                     /translation="MSEDKFLSDYSPRDAVWDTQRTLTDFVGGIYQTAAEFERYALRMA
                     SCSGLLRFGWSTIMETGETRLRLRSAQFCRVRHCPVCQWRRTLMWQARFYQALPKIVVD
                     YPSSRWLFLTLTVRNCEIGELGTVLTAMNAAFKRMEKRKELSPVQGWIRATEVTRGKDG
                     SAHPHFHCLLMVQPSWFKGKNYVKHERWVELWRDCLRVNYEPNIDIRAVKTKTGEVVAN
                     VAEQLQSAVAETLKYSVKPEDMANDPEWFLELTRQLHKRRFISTGGALKNVLQLDRETN
                     EDLVIADDVGDGTDDGKRTAFVWDSGKRRYKRAPEKDKSD"
                     /name="protein rep"
     Typing          1404..1635
                     /name="Col(BS512)"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="99.571"
                     /coverage="100.0"
                     /evalue="9.53e-117"
ORIGIN
        1 ggattaagtt ttggcacatt tggttttcat ccgcacgaag gttttgagga tgaattaatt
       61 ttatatattc agaaaacaaa cgagagggta aaaactcttt ttgtgaaaat agatttaaac
      121 ggtatcaagt ttggattttt aagaacgcat tcttagttct ggaaaagagc cagcggcagg
      181 ctgaggtgat aggtacgaga ttgcatgcaa tctctagtgc tctgtctatc ctgcattatc
      241 ctcagcatta tcctcagcct tgccaactcg acaccaatgc aggatagaca atccgatgtc
      301 aaatgttaac actctgcgag tggtacattt tccccggatt atcgtcctga gcctgccgct
      361 ggctctcttt ctaccgcctc gctttgctcg ttgctcaacg cctcacagac acggattaaa
      421 atccgcatcc gttcaccgtt ttttaaagtc cgttaaaagc atgatgccat ctccgagagt
      481 taatctcgtc aaatgctaaa tcgtgggggt cccctttggg gttccgattt agtgattgac
      541 gacaccaccg attaaaaaac ttatgcgggg tggatggttt cacgaagtga ggccatccac
      601 ctgtaagaca gggttttgtt tttattccct gttttggtga tcgggtgtgt ggaaaaggtt
      661 ggggtaagcc gttcgggggt gcttgttttg gggggttaaa attgtggtta ttttttgcgc
      721 aattctcgcg cgtgatcctt gtatttatac ttaagggata aatggcggat atgaaatagt
      781 ggtttagccc agtaatgacg aggctttgag tgggttttga caggtcaaag aaaatggagc
      841 agaattgagg cgtttttaat cggcgttggg gagtgcgtca acactcccca acatttcgaa
      901 tgtgtcacct cagcggcaaa ctctggtgac atgtactggc tcgcaatgca caggtacgtg
      961 atgaatatac cacatcaaat cacagcctgc ccagatcgga gcaggcttaa tgtcagaaga
     1021 taaattcctt tcggactaca gcccccgtga tgcagtttgg gatacccagc gcacgcttac
     1081 cgattttgtc gggggtatct accagactgc tgctgaattc gagcgctatg cactccgtat
     1141 ggcctcctgt agcggtttgt tacgttttgg ttggtctacc atcatggaaa ccggagaaac
     1201 gcgcctacgg cttcgtagtg cgcaattttg ccgtgtccgt cattgccctg tctgccagtg
     1261 gagaagaacc ctcatgtggc aagcccgttt ttatcaggct ctaccgaaaa tcgttgtgga
     1321 ttacccgtct tcccgatggt tgtttctgac gttaactgtc aggaactgcg agataggtga
     1381 acttggaaca gtccttacag caatgaatgc ggcgtttaag cgaatggaaa agcgaaagga
     1441 gctatcacct gttcaggggt ggatcagggc tacggaggtg acacgaggta aggatggcag
     1501 cgcacatccg cattttcact gtctgctgat ggtgcaacct tcttggttta aagggaagaa
     1561 ctacgttaag cacgaacgtt gggtagaact ctggcgcgat tgcttgcggg tgaactatga
     1621 gccgaatatc gatattcggg cagtaaaaac taagacaggt gaggttgtgg ccaacgttgc
     1681 cgagcaactg caaagcgcgg ttgctgaaac gctgaaatac tccgttaaac cggaagatat
     1741 ggcaaacgat cctgagtggt ttcttgagct gacgcggcag cttcacaagc gccgttttat
     1801 ctcgaccggt ggggcgctaa aaaacgtcct ccagttggat cgagaaacta atgaggatct
     1861 tgtcattgcc gacgatgtag gggatggcac tgatgacggg aagcggacgg cgtttgtctg
     1921 ggattcaggt aaacggcgtt acaaacgcgc ccctgagaag gataaatcgg attaacgtat
     1981 gaatattaat attgaatacc tgaatggaaa taagactatt ggtttatttt ttttaagaag
     2041 tgaagcggtg attcctgaca ggtttaaaaa ccttattttg cttattgat
//
