LOCUS       NZ_CP148512             5091 bp    DNA     circular CON 05-APR-2024
DEFINITION  Escherichia coli strain Z1323CEC0001 plasmid pZ1323CEC0001-6,
            complete sequence.
ACCESSION   NZ_CP148512
VERSION     NZ_CP148512.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40441568
            Assembly: GCF_037576255.1
KEYWORDS    RefSeq.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 5091)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Complete genome sequence of Escherichia coli isolated from humans,
            companion animals, industrial animals and wild animals
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5091)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-MAR-2024) Division of biotechnology, Jeonbuk National
            University, kobongro, Iksan 54596, South Korea
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.4.9
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 115X
            Sequencing Technology :: Illumina NovaSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037576255.1-RS_2024_04_05
            Annotation Date                   :: 04/05/2024 20:25:33
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,818
            CDSs (total)                      :: 5,691
            Genes (coding)                    :: 5,374
            CDSs (with protein)               :: 5,374
            Genes (RNA)                       :: 127
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 90
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 317
            CDSs (without protein)            :: 317
            Pseudo Genes (ambiguous residues) :: 0 of 317
            Pseudo Genes (frameshifted)       :: 107 of 317
            Pseudo Genes (incomplete)         :: 205 of 317
            Pseudo Genes (internal stop)      :: 51 of 317
            Pseudo Genes (multiple problems)  :: 44 of 317
            Pseudo Genes (short protein)      :: 4 of 317
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP148512.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..5091
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /strain="Z1323CEC0001"
                     /host="Chicken"
                     /db_xref="taxon:562"
                     /plasmid="pZ1323CEC0001-6"
                     /geo_loc_name="South Korea"
                     /collection_date="2023-02-23"
     gene            join(4554..5091,1..1013)
                     /locus_tag="WHU28_RS29015"
                     /old_locus_tag="WHU28_29010"
     CDS             join(4554..5091,1..1013)
                     /locus_tag="WHU28_RS29015"
                     /old_locus_tag="WHU28_29010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001624483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobA/MobL family protein"
                     /protein_id="WP_009440809.1"
                     /translation="MASYHCTVKTGAKGSALKHADYISRTGEYKSYKSREDLEFSSSGN
                     MPSWAKKNPAELWKAADEFERKNGTAYREIEIALPRELTREQRIELVEDFVQKELGDRH
                     AYQYAIHNPPGAIDGKEQPHAHIMFCERINDGIERDPQQFFKRANSKSPERGGAKKASI
                     PQTAGERKAALVALRSRWADVQNEHLARHGHESRVDHRSLKEQGINRTPEVHLGPVQAA
                     SLNGEQIVAIQERRNAERELKTARDAANAIQQEQEQKQKIKAVEPVRSARSPELLLQYR
                     KVMKTVIQGEARLARLGDANPNALKEHKLLQNAKAKKDSLSEWSRRIYEGARYLDKLGR
                     NVVSAQRELRELQEQRNALNGIRGLFRGADKREIDARILEQKSVLETAEHERNEFRNKL
                     QQAESEWDKENAAFKRTEGYKYVGDLDRYREREILAAASLENTRQKVAEEVSVARSQML
                     SLEPELSISGDEKAQMRHELLAEMAQERQQQEEKALRIQRSWAREASRSNERDQGMER"
                     /name="MobA/MobL family protein"
     gene            complement(1192..2274)
                     /locus_tag="WHU28_RS29020"
                     /old_locus_tag="WHU28_29015"
     CDS             complement(1192..2274)
                     /locus_tag="WHU28_RS29020"
                     /old_locus_tag="WHU28_29015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001340328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_250953079.1"
                     /translation="MNIKYILPLVSSFIISGCDSDGISKVKSSIDYSIDDSMTIGKAFD
                     TRSDCINGTWSEEEDSRGRTVVTYTCDISETGMKIINSEIIKGPESSLTGSIKNNNMEI
                     DNINKSIEMYKQQASLIEQTRKLMIEHVRKLENAFNEDPKISNNINIEPYLNKMLNIEC
                     HQRNEGYSCTTDEECRPYMNGLFSPNVSYDYLEESCQKHILPVYQSYIKNVLPLKSKIK
                     AISFTGMFNYCGRSSEECIKLIDDKFNGFSSYNQKQTQKISFYEDLNTRKNKTLNECKK
                     ILNISDVKLKYYWRVTDTGGVDYLSGELTYRINGENKSVAYNNNLVKYAYVNYTEKQIP
                     SDYVNSILNQNYETIKNCSY"
                     /name="hypothetical protein"
     gene            2807..3742
                     /locus_tag="WHU28_RS29025"
                     /old_locus_tag="WHU28_29020"
     CDS             2807..3742
                     /locus_tag="WHU28_RS29025"
                     /old_locus_tag="WHU28_29020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009440807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_047643682.1"
                     /translation="MSAALQYFEENLPHRPYHTDDLAFGLRISGKGRALLARYIQQNQP
                     HAQFWLVFDVDREGAAIDWSDRNAPAPNITVKNPVNGHAHLLYALNIAVRTAPDASVKA
                     LKYAAAVERSLCEKLCADVNYSGLICKNPFHLEWLVMEWREEAYTLDELADYLDLSASE
                     RRSIDKHYGMGRNCHLFEMTRKWAYRAIRQGWPAFSQWLEAVIQRVEMYNASLPVPLSL
                     AECRAIGKSIAKYTHRNFTPETFAQYVADTHTPEIQAKRGRKGGIAKGEAYDDKRFMAL
                     CMLENGYSQKAIAAMLNVHRNTIRNWAMHK"
                     /name="replication initiation protein"
     gene            complement(3936..4382)
                     /locus_tag="WHU28_RS29030"
                     /old_locus_tag="WHU28_29025"
     CDS             complement(3936..4382)
                     /locus_tag="WHU28_RS29030"
                     /old_locus_tag="WHU28_29025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000184721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraD"
                     /protein_id="WP_000184721.1"
                     /translation="MTNREDWLSAKIAYINGLKSPSEQQRLLVLLAEKKNRTTTDEKTL
                     SALIRAEKTAEKAAAAKARVTAIIAAERKAAARAERKARDHELYKAAGLMIVAGLVDSK
                     TGKPKFSAAELVGALAGIAELPRNHPKWQEWEKRGKELLTKDSA"
                     /name="conjugal transfer protein TraD"
     Typing          2808..3694
                     /name="Col156"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="95.946"
                     /coverage="95.0"
                     /evalue="0.0"
     Typing          4..1010
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="90.237"
                     /coverage="99.0"
                     /evalue="5.14e-174"
     Typing          4555..5090
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="98.324"
                     /coverage="99.0"
                     /evalue="1.67e-113"
ORIGIN
        1 gctgggctga tgtgcagaat gagcaccttg cgcgacacgg tcacgagtcg cgcgtagatc
       61 atcgttcgct gaaagaacag ggtatcaatc gcacgccaga agttcatctt ggccccgttc
      121 aggccgccag tctgaatggt gagcagattg ttgcaatcca ggaacggagg aatgccgagc
      181 gggaactcaa gaccgccaga gatgccgcaa atgccattca gcaggaacag gagcaaaagc
      241 aaaaaatcaa ggcagttgag cctgttcgtt cagcccgttc accggagcta ttgcttcagt
      301 accgcaaggt tatgaaaacg gtcattcagg gagaggcaag gcttgctcgt ttaggggatg
      361 ccaatcccaa tgcgctcaaa gaacataagc tgcttcagaa tgcgaaagct aaaaaagact
      421 ctctttccga atggagcagg cgaatatatg aaggagcacg gtatttagac aaactggggc
      481 gtaatgtcgt ttccgcacaa agggagctgc gggagctaca ggaacaacgc aatgctttga
      541 atgggattcg tggcctgttt cggggggctg acaaaaggga gattgatgcg cgtattctgg
      601 agcaaaaaag tgtgctggaa accgctgaac atgaaaggaa tgaattcagg aacaagctac
      661 agcaagctga atccgagtgg gacaaagaaa acgctgcttt taagcgtacc gagggatata
      721 agtacgttgg ggatctggac aggtacagag aacgtgagat tctggccgcg gcatctttag
      781 agaataccag gcaaaaggtt gctgaagaag tatccgttgc ccgtagccag atgttatctc
      841 tggagcctga actcagtata tctggagatg aaaaagctca aatgcgacat gagttactgg
      901 cagaaatggc gcaggaacgg cagcaacagg aggaaaaggc actgcgtata cagcgatcct
      961 gggccaggga ggcatcacgt agtaacgaac gtgatcaagg tatggagcgt tgaagcaata
     1021 tcgggactgc gccccgaacc ccgccaacgc ttcacgggac gcgaaaaaat tccgtgtccc
     1081 gtgaagcgtt ttctgaatga gaaaatttat cgttttgatt cactcactgt tcaggtgtta
     1141 atgaaattaa caagcgttat atgtgaaaca gccagtaagt gagatgtggt attaatagct
     1201 gcagttcttt attgtctcat agttttggtt aagtattgaa ttcacataat ctgatggtat
     1261 ttgtttttct gtgtagttaa catatgcata ttttactagg ttgttattgt atgctacgga
     1321 tttgttttcc ccgttaattc tgtatgttag ctccccactc agatagtcaa cacctccggt
     1381 gtctgttacg cgccagtaat attttagttt aacatccgag atatttaata tcttcttgca
     1441 ttcatttaat gttttgtttt ttcttgtgtt tagatcttcg tagaatgata ttttttgagt
     1501 ttgtttttga ttgtaagatg aaaatccatt aaatttatcg tctattaatt ttatgcattc
     1561 ctcagagctt ctcccacaat agttaaacat acctgtaaaa cttattgctt taattttaga
     1621 ttttaggggt aatacatttt ttatatatga ttggtatact ggtaatatgt gtttttgaca
     1681 tgattcttct aagtaatcat atgatacatt tggtgaaaac aagccgttca tatatggcct
     1741 gcactcttca tctgttgtgc agctatagcc ttcatttctc tgatgacatt ctatgtttag
     1801 cattttattg aggtaaggtt caatattaat attgttagat attttgggat cttcattgaa
     1861 ggcgttttct aacttcctta cgtgttcgat catgagtttt cttgtttgct caattaatga
     1921 tgcttgctgt ttgtacatct ctattgattt attgatgttg tctatttcca tattgttatt
     1981 ttttatagag cctgtcaggc tgctctcagg gccttttatt atttctgagt ttattatttt
     2041 catgccggtt tcactgatgt cacaagtata tgtaacaaca gttcttcctc gactatcctc
     2101 ttcttcactc catgttccat taatacaatc actccttgta tcaaaagcct tgccaatagt
     2161 cattgagtcg tcaatggaat aatctatgga agattttact ttgcttatcc catcagagtc
     2221 acaccctgaa ataataaatg aagatactaa tggaagaatg tatttgatgt tcatattcat
     2281 cttttcactt ttgacttatt tgacaataac gaacgcaaat atgttaatac aaacaatatg
     2341 ttaatggaat ccatgcatac cgtataaacc gacttactat ttggtgctca gcgcctcatt
     2401 gagctcgaaa agatttcgcg cccgtttacc gttctctgga tgagaaagtt tgtctttttg
     2461 acccgttcgc agctttgtgc ggtcgaaacc gatcgcgcat cgctttcgtg catagttatg
     2521 caggccaatg aaaacaattc tgacgcattt ttctgtttta ccctggtgtt tccttgtctt
     2581 tttgcgtttt ttgcgtcaga gagcgattga gggcgtttta cggggtacgt acaacgagag
     2641 ttatggtaaa tggatcggtt tttcgggaag gatcgacagg atttgccgtt gggtgtagtg
     2701 taagcgactg aaaaacaaac gcccctgaaa ttcgtgtcta tccgccaaga ctttcacgaa
     2761 aatacagggg cgatgtcggt cgataacctg gaaggaatcg taacacatga gcgccgcgct
     2821 tcaatacttc gaagaaaatt taccccaccg tccctatcac acggatgatc tcgctttcgg
     2881 ccttcgtatc tccggcaaag ggcgcgcgct tcttgcacgg tatatccagc agaaccagcc
     2941 tcatgcacag ttctggctgg tttttgacgt tgaccgcgag ggggctgcta ttgactggag
     3001 cgaccggaac gctcccgcgc cgaacatcac cgttaaaaat cctgtgaacg gacacgctca
     3061 cctgctctac gcactcaaca tcgccgtgag aaccgcgcct gatgcctcgg ttaaggcgct
     3121 gaaatatgcc gcagcggttg aacgttcgct gtgtgagaaa ctttgtgcgg atgtgaacta
     3181 cagcggcctg atttgcaaaa atccgttcca cctggaatgg ctggtgatgg agtggcgcga
     3241 ggaagcctat accctcgatg aactggctga ttatctcgat ttgagcgcct cagagcgtcg
     3301 tagcatcgat aaacattacg ggatggggcg aaactgccac ctgttcgaaa tgacgcgcaa
     3361 atgggcttac agggcgattc gtcagggctg gccagcgttc tcacagtggc ttgaagcggt
     3421 gatccagcgt gtcgaaatgt acaatgcatc gcttcccgtt ccgctttcac tggctgaatg
     3481 tcgggctatt ggcaagagca ttgcgaaata cacgcacagg aacttcacgc cggaaacttt
     3541 cgcacagtac gtggctgata cgcacacacc agaaatacag gccaagagag gccggaaagg
     3601 tggtatcgct aaaggcgaag cctacgatga caagcgtttc atggcgctat gtatgctgga
     3661 gaatggatat tctcagaaag ctattgcggc gatgctgaat gtacatcgta atacgatccg
     3721 taattgggca atgcacaaat agcctatatc agataacagc gccttttcgg cgtctttttg
     3781 agcagcgggc tttccggcgg ttttctcctt tcagcccagc aatggtgcgg cttacggtat
     3841 gattgaggtt gtcgtgctcg ccgcagtctc atgaccgagc gtagcgagcg aatgagcgag
     3901 gaagcaccag ggaaccggaa cgtgaacgga ggctcttacg cactgtcttt ggtgagtagc
     3961 tctttcccgc gtttttccca ttcctgccat tttggatggt tgcgcggtag ctctgcgatt
     4021 cctgcgagtg cgcctaccag ttcggcagca ctaaactttg gttttccggt tttgctgtcc
     4081 accagtcctg ccacaatcat gaggcctgcg gccttgtaga gttcatgatc tcgtgccttt
     4141 cgttccgccc ttgcggctgc cttccgttct gccgctatga ttgccgttac tctggctttt
     4201 gctgcggctg ctttctctgc ggttttttct gctcgtatca gtgcggacaa cgttttttca
     4261 tccgtcgttg ttcggttttt tttctctgcc agtaacacaa gtaatctctg ctgctctgac
     4321 ggtgatttca gtccgttgat gtaggcaatt tttgcactta accagtcttc acgatttgtc
     4381 atccttacct ctgcactttt gccgttaatg tgagttgtta ttgtgcataa tatcaccttg
     4441 tctgcctgcg tgtgagaacg taaaatcatc cctgatttat tcagggatgc gcacttagta
     4501 gtttctctac ttcatcgaga aactgtgcgc tcctgcggag ggctaaaagg ctgatggcaa
     4561 gctaccattg caccgtcaaa actggagcaa aaggcagtgc cttaaaacat gctgattaca
     4621 tttccagaac cggcgaatat aagagctaca aatcgcggga ggatctggaa ttttcgtcat
     4681 ctggtaacat gccatcatgg gcgaagaaaa atcccgcaga gctatggaaa gccgcagatg
     4741 aatttgaacg aaaaaacggg acggcatacc gtgaaattga gatcgcatta ccgcgtgagt
     4801 tgacacgcga acaacggata gaacttgttg aagatttcgt gcaaaaggaa cttggtgatc
     4861 gccatgccta ccagtacgcg atccacaatc cgccaggtgc aatcgacgga aaggaacagc
     4921 cacacgcgca tatcatgttt tgtgagcgga ttaatgatgg tattgaacgc gatccgcagc
     4981 aattttttaa acgtgccaac agcaaatcac cagagcgggg aggcgcaaaa aaagcgagta
     5041 ttccccagac cgccggagag cgaaaagccg cccttgttgc gctgcgttcc c
//
