LOCUS       NZ_CP148504             2089 bp    DNA     circular CON 15-APR-2024
DEFINITION  Escherichia coli strain Z1323CEC0002 plasmid pZ1323CEC0002-7,
            complete sequence.
ACCESSION   NZ_CP148504
VERSION     NZ_CP148504.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40441569
KEYWORDS    RefSeq.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 2089)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Complete genome sequence of Escherichia coli isolated from humans,
            companion animals, industrial animals and wild animals
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2089)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-MAR-2024) Division of biotechnology, Jeonbuk National
            University, kobongro, Iksan 54596, South Korea
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method              :: Unicycler v. v0.4.9
            Genome Representation        :: Full
            Expected Final Version       :: Yes
            Genome Coverage              :: 115X
            Sequencing Technology :: Illumina NovaSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI RefSeq
            Annotation Name              :: GCF_038096995.1-RS_2024_04_15
            Annotation Date              :: 04/15/2024 11:32:08
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision :: 6.7
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                :: 2
            CDSs (total)                 :: 2
            Genes (coding)               :: 2
            CDSs (with protein)          :: 2
            Genes (RNA)                  :: 0
            tRNAs                        :: 0
            ncRNAs                       :: 0
            Pseudo Genes (total)         :: 0
            CDSs (without protein)       :: 0
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP148504.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2089
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /strain="Z1323CEC0002"
                     /host="Chicken"
                     /db_xref="taxon:562"
                     /plasmid="pZ1323CEC0002-7"
                     /geo_loc_name="South Korea"
                     /collection_date="2023-02-23"
     gene            complement(join(1934..2089,1..111))
                     /locus_tag="WHU64_RS00005"
                     /old_locus_tag="WHU64_27495"
     CDS             complement(join(1934..2089,1..111))
                     /locus_tag="WHU64_RS00005"
                     /old_locus_tag="WHU64_27495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001024536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001024536.1"
                     /translation="MNINIEYLNGNKTIGLFFLRSEAVIPDRFKNLILLIDGLSFGTFG
                     FHPHEGFEDELILYIQKTNERVKTLFVKIDLNGIKFGFLRTHS"
                     /name="hypothetical protein"
     gene            complement(115..1080)
                     /locus_tag="WHU64_RS00010"
                     /old_locus_tag="WHU64_27500"
     CDS             complement(115..1080)
                     /locus_tag="WHU64_RS00010"
                     /old_locus_tag="WHU64_27500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012421200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_001287824.1"
                     /translation="MSEDKFLSDYSPRDAVWDTQRTLTDSVGGIYQTAAEFERYALRMA
                     SCSGLLRFGWSTIMETGETRLRLRSAQFCRVRHCPVCQWRRTLMWQARFYQALPKIVVD
                     YPSSRWLFLTLTVRNCEIGELGTVLTAMNAAFKRMEKRKELSPVQGWIRATEVTRGKDG
                     SAHPHFHCLLMVQPSWFKGKNYVKHERWVELWRDCLRVNYEPNIDIRAVKTKTGEVVAN
                     VAEQLQSAVAETLKYSVKPEDMANDPEWFLELTRQLHKRRFISTGGALKNVLQLDRETN
                     EDLVIADDVGDGTDDGKRTAFVWDSGKRRYKRAPEKDKSD"
                     /name="protein rep"
     Typing          complement(456..687)
                     /name="Col(BS512)"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.05e-118"
ORIGIN
        1 atcaataagc aaaataaggt ttttaaacct gtcaggaatc accgcttcac ttcttaaaaa
       61 aaataaacca atagtcttat ttccattcag gtattcaata ttaatattca tacgttaatc
      121 cgatttatcc ttctcagggg cacgtttgta acgccgttta cctgaatccc agacaaacgc
      181 cgtccgcttc ccgtcatcag tgccatcccc tacatcgtcg gcaatgacaa gatcctcatt
      241 ggtttctcga tccaactgga ggacgttttt tagcgcccca ccggtcgaga taaaacggcg
      301 cttgtgaagc tgccgcgtca gctcaagaaa ccactcagga tcgtttgcca tatcttccgg
      361 tttaacggag tatttcagcg tttcagcaac cgcgctttgc agttgctcgg caacgttggc
      421 cacaacctca cctgtcttag tttttactgc ccgaatatcg atattcggct catagttcac
      481 ccgcaagcaa tcgcgccaga gttctaccca acgttcgtgc ttaacgtagt tcttcccttt
      541 aaaccaagaa ggttgcacca tcagcagaca gtgaaaatgc ggatgtgcgc tgccatcctt
      601 acctcgcgtc acctccgtag ccctgatcca cccctgaaca ggtgatagct cctttcgctt
      661 ttccattcgc ttaaacgccg cattcattgc tgtaaggact gttccaagtt cacctatctc
      721 gcagttcctg acagttaacg tcagaaacaa ccatcgggaa gacgggtaat ccacaacgat
      781 tttcggtaga gcctgataaa aacgggcttg ccacatgagg gttcttctcc actggcagac
      841 agggcaatga cggacacggc aaaattgcgc actacgaagc cgtaggcgcg tttctccggt
      901 ttccatgatg gtagaccaac caaaacgtaa caaaccgcta caggaggcca tacggagtgc
      961 atagcgctcg aattcagcag cagtctggta gatacccccg acagaatcgg taagcgtgcg
     1021 ctgggtatcc caaactgcat cacgggggct gtagtccgaa aggaatttat cttctgacat
     1081 taagcctgct ccgatctggg caggctgtga tttgatgtgg tatattcatc acgtacctgt
     1141 gcattgcgag ccagtacatg tcaccagagt ttgccgctga ggtgacacat tcgaaatgtt
     1201 ggggagtgtt gacgcactcc ccaacgccga ttaaaaacgc ctcaattctg ctccattttc
     1261 tttgacctgt caaaacccac tcaaagcctc gtcattactg ggctaaacca ctatttcata
     1321 tccgccattt atcccttaag tataaataca aggatcacgc gcgagaattg cgcaaaaaat
     1381 aaccacaatt ttaaaccccc aaaacaagca cccccgaacg gcttacccca accttttcca
     1441 cacacccgat caccaaaaca gggaataaaa acaaaaccct gtcttacagg tggatggcct
     1501 cacttcgtga aaccatccac cccgcataag ttttttaatc ggtggtgtcg tcaatcacta
     1561 aatcggaacc ccaaagggga cccccacgat ttagcatttg acgagattaa ctctcggaga
     1621 tggcatcatg cttttaacgg actttaaaaa acggtgaacg gatgcggatt ttaatccgtg
     1681 tctgtgaggc gttgagcaac gagcaaagcg aggcggtaga aagagagcca gcggcaggct
     1741 caggacgata atccggggaa aatgtaccac tcgcagagtg ttaacatttg acatcggatt
     1801 gtctatcctg cattggtgtc gagttggcaa ggctgaggat aatgctgagg ataatgcagg
     1861 atagacagag cactagagat tgcatgcaat ctcgtaccta tcacctcagc ctgccgctgg
     1921 ctcttttcca gaactaagaa tgcgttctta aaaatccaaa cttgataccg tttaaatcta
     1981 ttttcacaaa aagagttttt accctctcgt ttgttttctg aatatataaa attaattcat
     2041 cctcaaaacc ttcgtgcgga tgaaaaccaa atgtgccaaa acttaatcc
//
