LOCUS       NZ_CP148502             3657 bp    DNA     circular CON 15-APR-2024
DEFINITION  Escherichia coli strain Z1323CEC0002 plasmid pZ1323CEC0002-5,
            complete sequence.
ACCESSION   NZ_CP148502
VERSION     NZ_CP148502.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40441569
KEYWORDS    RefSeq.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 3657)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Complete genome sequence of Escherichia coli isolated from humans,
            companion animals, industrial animals and wild animals
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3657)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-MAR-2024) Division of biotechnology, Jeonbuk National
            University, kobongro, Iksan 54596, South Korea
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method              :: Unicycler v. v0.4.9
            Genome Representation        :: Full
            Expected Final Version       :: Yes
            Genome Coverage              :: 115X
            Sequencing Technology :: Illumina NovaSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI RefSeq
            Annotation Name              :: GCF_038096975.1-RS_2024_04_15
            Annotation Date              :: 04/15/2024 11:32:50
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision :: 6.7
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                :: 4
            CDSs (total)                 :: 4
            Genes (coding)               :: 4
            CDSs (with protein)          :: 4
            Genes (RNA)                  :: 0
            tRNAs                        :: 0
            ncRNAs                       :: 0
            Pseudo Genes (total)         :: 0
            CDSs (without protein)       :: 0
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP148502.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3657
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /strain="Z1323CEC0002"
                     /host="Chicken"
                     /db_xref="taxon:562"
                     /plasmid="pZ1323CEC0002-5"
                     /geo_loc_name="South Korea"
                     /collection_date="2023-02-23"
     gene            46..204
                     /locus_tag="WHU64_RS00005"
                     /old_locus_tag="WHU64_27450"
     CDS             46..204
                     /locus_tag="WHU64_RS00005"
                     /old_locus_tag="WHU64_27450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_157904780.1"
                     /translation="MHEPPVQPDRCALSGNYRLESNPVRHDKAPLAAATGNWTRWIEIL
                     RVLEVVT"
                     /name="replication initiation protein"
     gene            683..1564
                     /locus_tag="WHU64_RS00010"
                     /old_locus_tag="WHU64_27455"
     CDS             683..1564
                     /locus_tag="WHU64_RS00010"
                     /old_locus_tag="WHU64_27455"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_096194944.1"
                     /translation="MLRSNIIDAASSVEDLIAKLGGTGRGLREKTNSISHLLEPSYVKK
                     INMIATVRNKAAHERVPPTNIQDFERVISEVKDYLTELYYKKIASKTYSQSNTLFDIID
                     AAISVEDLITKLGGTGRGLREKTNSISHLLEPSYVKKINMIATVRNKAAHERVLPTNIQ
                     DFERAISEVKDYLTELYYKKIASKTHSQSNTRFENLSKEELREELARLVDEEISRNKAE
                     LEYMRSGSFIKDKITKEAETKQDTTEQQKTFKQQPNGWSSLSTTGKIISATGIAIGCAV
                     LGIFGNPFDKRN"
                     /name="hypothetical protein"
     gene            1548..2066
                     /locus_tag="WHU64_RS00015"
                     /old_locus_tag="WHU64_27460"
     CDS             1548..2066
                     /locus_tag="WHU64_RS00015"
                     /old_locus_tag="WHU64_27460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019717780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_126856901.1"
                     /translation="MIKEIETDKPSKVIFYRSSIVKQYSKGVRMDWYDVKWFFRDVCDS
                     VSNVAGNIYDVAADGVGAVTDFIEENPKTSIAIGTVVGIATAGVAAPAIAASIGATGVL
                     GTTAGGTAISSLSGAALSSASLAALGGGSIAAGGAGMAGGTCVVAAGGGIAAGTVSLGG
                     VAATKTIKS"
                     /name="hypothetical protein"
     gene            2845..3039
                     /locus_tag="WHU64_RS00020"
                     /old_locus_tag="WHU64_27465"
     CDS             2845..3039
                     /locus_tag="WHU64_RS00020"
                     /old_locus_tag="WHU64_27465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001041627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_046341548.1"
                     /translation="MNKQQQTALNMARFIKSQSLTLLEKLDALDADEQAAMCERLQELA
                     EELQNSIQIRFEAESETGT"
                     /name="Rop family plasmid primer RNA-binding protein"
     Typing          complement(2331..2586)
                     /name="MOBF"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="96.899"
                     /coverage="89.0"
                     /evalue="2.61e-118"
     Typing          complement(2711..2809)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="98.0"
                     /coverage="100.0"
                     /evalue="1.35e-41"
     Typing          complement(3120..3202)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="98.81"
                     /coverage="97.0"
                     /evalue="1.86e-34"
     Typing          2..155
                     /name="rep_cluster_2370"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="97.419"
                     /coverage="95.0"
                     /evalue="4.33e-68"
     Typing          3231..3657
                     /name="rep_cluster_2350"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="93.473"
                     /coverage="98.0"
                     /evalue="3.760000000000001e-179"
ORIGIN
        1 aggtatctcg gctcggtgta ggtcgttcgc tccaagctgg gctgtgtgca cgaacccccc
       61 gttcagcccg accgctgcgc cttatccggt aactatcgtc ttgagtccaa cccggtaaga
      121 cacgacaaag cgccactggc agcagccact ggtaactgga caaggtggat tgagatatta
      181 agagttcttg aagtggtgac ctaactgcgg ctacactaga aggacagtat ttggtatctg
      241 tgctccacca agccagttac cttcggaaga aagagttggt agctctagat tccggcaaac
      301 aaaccaccgt tggtagcggt ggtttttttg tttacaggca gcagattacg cgcagaaaaa
      361 aaggatcaca agaggatcct ttgatctttt cacgccacgt ccttagtcat agccatagct
      421 cacaattttt aaccacaatt gactccaagc cggaaaccca gaaaatacct ccaccaaagc
      481 aagtaatcga cagatttgca tgacgttgaa taggtgacag gtcatgtgtc gaaatcgttg
      541 tctcggtgac ggtcattcaa tcagttgttt gtgccccccc tcccatcaaa caagtcgcga
      601 aaaatccaag cctccggcat cagcacataa ttttgacgca ctcaaaaata cggtatcctt
      661 ttaggaatat ggaggatcag aaatgctacg ttctaacatc attgatgcag caagttccgt
      721 ggaagacctg atagccaaat taggcggtac aggacgtgga ctacgtgaaa aaaccaacag
      781 tataagccac ctgcttgaac caagttacgt aaaaaaaatc aacatgatag cgacggttcg
      841 taacaaagct gcgcacgaac gagtcccccc tacaaacatt caggattttg aacgtgtcat
      901 atcagaagta aaagactatt taaccgaact ttattataaa aaaatcgcgt caaagacata
      961 ttctcaatca aatactcttt tcgacatcat tgatgctgca atttccgtgg aagacctgat
     1021 aaccaaatta ggcggtacgg ggcgtgggct acgtgaaaaa accaacagta taagccacct
     1081 gcttgaacca agttacgtaa aaaaaatcaa catgatagcg acagttcgta acaaagccgc
     1141 gcacgaacga gtcctcccta caaatattca ggattttgaa cgtgccatat cagaagtaaa
     1201 agactattta accgaacttt attataaaaa aatcgcatca aagacacatt ctcaatcaaa
     1261 tactcgtttc gaaaacctca gcaaagaaga gcttcgagaa gagctggcga ggcttgtcga
     1321 tgaggaaata tccagaaata aagctgagct ggaatacatg cggagcggtt cgtttatcaa
     1381 ggataaaata accaaagaag cagaaacaaa acaggatact accgaacaac agaagacttt
     1441 taagcagcaa ccaaacgggt ggtcaagttt gagcacgaca gggaaaatca tttctgccac
     1501 cgggatcgcc attggttgtg cagtgctcgg tatctttggt aatccatttg ataaaagaaa
     1561 ttgagactga caaaccttct aaggttattt tttatcgttc atctatcgtc aagcaatatt
     1621 caaaaggagt gagaatggat tggtacgatg taaaatggtt tttccgcgat gtttgcgact
     1681 ccgtttcaaa tgtggcaggt aatatttacg atgtggcagc tgacggcgta ggggctgtta
     1741 cagattttat cgaagagaac cctaaaacat ccattgcaat aggaactgtg gttgggattg
     1801 caacagcagg ggtagcagct ccagcaatag cagcaagcat tggagcaaca ggcgttttag
     1861 gaacaactgc cggaggtacg gctatatctt ccttaagtgg agcagcgcta tccagcgcat
     1921 ctttagccgc cttaggaggg ggttcaatcg cagcaggagg agcgggtatg gctggcggaa
     1981 cctgtgtggt tgcagcagga ggaggcattg cagcagggac cgttagtcta ggaggggttg
     2041 cagcgacaaa aacgataaaa agctaataag ccagcacccc atttaccata acgtcgcatt
     2101 acgcgcaccg ctaaaacgcg ctgaacgcga ttctgccgca aacaccgcaa aaagagatgt
     2161 ttcacccagt gaaaaccgga aaaatgcgtc aggatcgctt tcggctcact gcatagctat
     2221 gcatgaaagt gaatggcgat cggtttgggc gcatacagtg cccatgagac acattttcgg
     2281 acattttcag ttcgtgaatc cctgactcat tgctacatat ctgaacagac acccctagca
     2341 gcgcccccag gggtgtcctg taaaaaaaca caccgcgccg ctagcagcac ccctaatata
     2401 agatgatgtt ttttatgaaa atagtcagta ccacccctaa aaagcggtgt tggcgcagct
     2461 acaacaccgc gccgacaccg cttttttaaa tatcacaaag agagcaagaa gaactaattt
     2521 gtcataactc tctatttata aagaaaaatc agcaaaaact tgtttttgcg tggggtgtgg
     2581 gcatttcagg catgagaaca gactcgcgtt tttccggagt atcagcggaa ttattgatta
     2641 agaaacactc gacgcagagc gaaattttat gcaacagcgg ctgcactgca cagggattat
     2701 ttatcagttg atatgctgtg ccatgatacg tcctaaagaa acaggacagg atgtgcaatt
     2761 gtaataccgt cgcccgcaac gtcttacaat taccacctgc tcagggtccc cccgacaccc
     2821 ggaactgacg gagaacaacg gaaggtgaac aaacaacaac aaactgcgct gaatatggcg
     2881 cgatttatca aaagccagag cctgacactg cttgaaaaac tggatgctct ggatgccgac
     2941 gaacaggcgg ccatgtgcga acgactgcaa gaactcgcag aagaactcca gaacagcatc
     3001 cagattcgct ttgaggccga aagtgaaaca ggaacataac gaagctgacg gaggcggtca
     3061 cggctttccc gtgggcgttt tcgtcagcag acaagcccgt cagggcgcgt cagggggttt
     3121 tagcgggtgt cggggcgcag ccatgaccca gtcacgtagc gatagcggag tgtatactgg
     3181 cttaactatg cagcatcagt gcgaattgta tggaaagcgc accatgtccg gtgtgaaatg
     3241 ccgcacagat gcgtaaggag aaaatgcacg ttccggcgct cttccgcttc ctcgctcact
     3301 gactcgctac gctcggtcgt tcggctgcgg cgagcggtgt ctgctcactc aaaagcggag
     3361 atgcggttat ccacagaatc aggggataaa gccaaaagaa acatgtgagc aaaaaacgag
     3421 aacccggaaa aggctgcgcc gttggcgttt ttccataggc tccgcccccc tgacgagcat
     3481 cataaaaatc gacgctcaag tcagaggtgg cgaaacccga caggactata aagataccag
     3541 gcgtttcccc ctggaagctc cctcgtgcgc tctcctgttc cgaccctgcc gcttaccgga
     3601 tacctgtccg cctttctccc ttcgggaagc gtggcgcttt ctcatagctc acgctgt
//
