LOCUS       NZ_CP148490             2089 bp    DNA     circular CON 15-APR-2024
DEFINITION  Escherichia coli strain Z1323CEC0004 plasmid pZ1323CEC0004-8,
            complete sequence.
ACCESSION   NZ_CP148490
VERSION     NZ_CP148490.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40441571
KEYWORDS    RefSeq.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 2089)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Complete genome sequence of Escherichia coli isolated from humans,
            companion animals, industrial animals and wild animals
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2089)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-MAR-2024) Division of biotechnology, Jeonbuk National
            University, kobongro, Iksan 54596, South Korea
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method              :: Unicycler v. v0.4.9
            Genome Representation        :: Full
            Expected Final Version       :: Yes
            Genome Coverage              :: 116X
            Sequencing Technology :: Illumina NovaSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI RefSeq
            Annotation Name              :: GCF_038096915.1-RS_2024_04_15
            Annotation Date              :: 04/15/2024 11:29:50
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision :: 6.7
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                :: 2
            CDSs (total)                 :: 2
            Genes (coding)               :: 2
            CDSs (with protein)          :: 2
            Genes (RNA)                  :: 0
            tRNAs                        :: 0
            ncRNAs                       :: 0
            Pseudo Genes (total)         :: 0
            CDSs (without protein)       :: 0
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP148490.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2089
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /strain="Z1323CEC0004"
                     /host="Chicken"
                     /db_xref="taxon:562"
                     /plasmid="pZ1323CEC0004-8"
                     /geo_loc_name="South Korea"
                     /collection_date="2023-02-23"
     gene            complement(join(2085..2089,1..961))
                     /locus_tag="WHU49_RS00005"
                     /old_locus_tag="WHU49_27900"
     CDS             complement(join(2085..2089,1..961))
                     /locus_tag="WHU49_RS00005"
                     /old_locus_tag="WHU49_27900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012421200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_001287824.1"
                     /translation="MSEDKFLSDYSPRDAVWDTQRTLTDSVGGIYQTAAEFERYALRMA
                     SCSGLLRFGWSTIMETGETRLRLRSAQFCRVRHCPVCQWRRTLMWQARFYQALPKIVVD
                     YPSSRWLFLTLTVRNCEIGELGTVLTAMNAAFKRMEKRKELSPVQGWIRATEVTRGKDG
                     SAHPHFHCLLMVQPSWFKGKNYVKHERWVELWRDCLRVNYEPNIDIRAVKTKTGEVVAN
                     VAEQLQSAVAETLKYSVKPEDMANDPEWFLELTRQLHKRRFISTGGALKNVLQLDRETN
                     EDLVIADDVGDGTDDGKRTAFVWDSGKRRYKRAPEKDKSD"
                     /name="protein rep"
     gene            complement(1815..2081)
                     /locus_tag="WHU49_RS00010"
                     /old_locus_tag="WHU49_27905"
     CDS             complement(1815..2081)
                     /locus_tag="WHU49_RS00010"
                     /old_locus_tag="WHU49_27905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001024536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001024536.1"
                     /translation="MNINIEYLNGNKTIGLFFLRSEAVIPDRFKNLILLIDGLSFGTFG
                     FHPHEGFEDELILYIQKTNERVKTLFVKIDLNGIKFGFLRTHS"
                     /name="hypothetical protein"
     Typing          complement(337..568)
                     /name="Col(BS512)"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.05e-118"
ORIGIN
        1 ccgatttatc cttctcaggg gcacgtttgt aacgccgttt acctgaatcc cagacaaacg
       61 ccgtccgctt cccgtcatca gtgccatccc ctacatcgtc ggcaatgaca agatcctcat
      121 tggtttctcg atccaactgg aggacgtttt ttagcgcccc accggtcgag ataaaacggc
      181 gcttgtgaag ctgccgcgtc agctcaagaa accactcagg atcgtttgcc atatcttccg
      241 gtttaacgga gtatttcagc gtttcagcaa ccgcgctttg cagttgctcg gcaacgttgg
      301 ccacaacctc acctgtctta gtttttactg cccgaatatc gatattcggc tcatagttca
      361 cccgcaagca atcgcgccag agttctaccc aacgttcgtg cttaacgtag ttcttccctt
      421 taaaccaaga aggttgcacc atcagcagac agtgaaaatg cggatgtgcg ctgccatcct
      481 tacctcgcgt cacctccgta gccctgatcc acccctgaac aggtgatagc tcctttcgct
      541 tttccattcg cttaaacgcc gcattcattg ctgtaaggac tgttccaagt tcacctatct
      601 cgcagttcct gacagttaac gtcagaaaca accatcggga agacgggtaa tccacaacga
      661 ttttcggtag agcctgataa aaacgggctt gccacatgag ggttcttctc cactggcaga
      721 cagggcaatg acggacacgg caaaattgcg cactacgaag ccgtaggcgc gtttctccgg
      781 tttccatgat ggtagaccaa ccaaaacgta acaaaccgct acaggaggcc atacggagtg
      841 catagcgctc gaattcagca gcagtctggt agataccccc gacagaatcg gtaagcgtgc
      901 gctgggtatc ccaaactgca tcacgggggc tgtagtccga aaggaattta tcttctgaca
      961 ttaagcctgc tccgatctgg gcaggctgtg atttgatgtg gtatattcat cacgtacctg
     1021 tgcattgcga gccagtacat gtcaccagag tttgccgctg aggtgacaca ttcgaaatgt
     1081 tggggagtgt tgacgcactc cccaacgccg attaaaaacg cctcaattct gctccatttt
     1141 ctttgacctg tcaaaaccca ctcaaagcct cgtcattact gggctaaacc actatttcat
     1201 atccgccatt tatcccttaa gtataaatac aaggatcacg cgcgagaatt gcgcaaaaaa
     1261 taaccacaat tttaaacccc caaaacaagc acccccgaac ggcttacccc aaccttttcc
     1321 acacacccga tcaccaaaac agggaataaa aacaaaaccc tgtcttacag gtggatggcc
     1381 tcacttcgtg aaaccatcca ccccgcataa gttttttaat cggtggtgtc gtcaatcact
     1441 aaatcggaac cccaaagggg acccccacga tttagcattt gacgagatta actctcggag
     1501 atggcatcat gcttttaacg gactttaaaa aacggtgaac ggatgcggat tttaatccgt
     1561 gtctgtgagg cgttgagcaa cgagcaaagc gaggcggtag aaagagagcc agcggcaggc
     1621 tcaggacgat aatccgggga aaatgtacca ctcgcagagt gttaacattt gacatcggat
     1681 tgtctatcct gcattggtgt cgagttggca aggctgagga taatgctgag gataatgcag
     1741 gatagacaga gcactagaga ttgcatgcaa tctcgtacct atcacctcag cctgccgctg
     1801 gctcttttcc agaactaaga atgcgttctt aaaaatccaa acttgatacc gtttaaatct
     1861 attttcacaa aaagagtttt taccctctcg tttgttttct gaatatataa aattaattca
     1921 tcctcaaaac cttcgtgcgg atgaaaacca aatgtgccaa aacttaatcc atcaataagc
     1981 aaaataaggt ttttaaacct gtcaggaatc accgcttcac ttcttaaaaa aaataaacca
     2041 atagtcttat ttccattcag gtattcaata ttaatattca tacgttaat
//
