LOCUS       NZ_CP148482             3282 bp    DNA     circular CON 15-APR-2024
DEFINITION  Escherichia coli strain Z1323CEC0005 plasmid pZ1323CEC0005_1-9,
            complete sequence.
ACCESSION   NZ_CP148482
VERSION     NZ_CP148482.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40441572
KEYWORDS    RefSeq.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 3282)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Complete genome sequence of Escherichia coli isolated from humans,
            companion animals, industrial animals and wild animals
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3282)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-MAR-2024) Division of biotechnology, Jeonbuk National
            University, kobongro, Iksan 54596, South Korea
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method              :: Unicycler v. v0.4.9
            Genome Representation        :: Full
            Expected Final Version       :: Yes
            Genome Coverage              :: 110X
            Sequencing Technology :: Illumina NovaSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI RefSeq
            Annotation Name              :: GCF_038096845.1-RS_2024_04_15
            Annotation Date              :: 04/15/2024 11:34:21
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision :: 6.7
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                :: 3
            CDSs (total)                 :: 3
            Genes (coding)               :: 3
            CDSs (with protein)          :: 3
            Genes (RNA)                  :: 0
            tRNAs                        :: 0
            ncRNAs                       :: 0
            Pseudo Genes (total)         :: 0
            CDSs (without protein)       :: 0
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP148482.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3282
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /strain="Z1323CEC0005"
                     /host="Chicken"
                     /db_xref="taxon:562"
                     /plasmid="pZ1323CEC0005_1-9"
                     /geo_loc_name="South Korea"
                     /collection_date="2023-02-24"
     gene            complement(join(3033..3282,1..590))
                     /locus_tag="WHU53_RS00005"
                     /old_locus_tag="WHU53_29070"
     CDS             complement(join(3033..3282,1..590))
                     /locus_tag="WHU53_RS00005"
                     /old_locus_tag="WHU53_29070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000546749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EcsC family protein"
                     /protein_id="WP_001677176.1"
                     /translation="MHLEEEDLRALERAVELLEQDTITETLTQLVGTPIDYLMSKLPKG
                     AEKKIYSLVEKSLNKAANAALWSLDNEPNRIASTKTNKFFAALSGAIGGAFGFSALAIE
                     LPVSTTIMLRSIADIARSEGFDLDRIDTKLECLAVFSFGGPSEDDDAVNTAYYATRNLT
                     AEIVQDLSKEISNIAVKNAASTQTGKWLASLIEKVATRFGIVITEKMAAQAAPVIGALA
                     GATLNTMFTDYYQDMARGHFIVKRLERKYGDELIKAEYIKISDKLTNQNQRKHLNSN"
                     /name="EcsC family protein"
     gene            complement(905..1063)
                     /locus_tag="WHU53_RS00010"
                     /old_locus_tag="WHU53_29075"
     CDS             complement(905..1063)
                     /locus_tag="WHU53_RS00010"
                     /old_locus_tag="WHU53_29075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_071529495.1"
                     /translation="MHEPPVQPDRCALSGNYRLESNPVRHDKAPLAAATGNWTRWIEIL
                     RVLEVVA"
                     /name="replication initiation protein"
     gene            complement(1728..1922)
                     /locus_tag="WHU53_RS00015"
                     /old_locus_tag="WHU53_29080"
     CDS             complement(1728..1922)
                     /locus_tag="WHU53_RS00015"
                     /old_locus_tag="WHU53_29080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001041627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_001041631.1"
                     /translation="MNKQQQTALNMARFIKSQSLTLLEKLDALDADEQAAMCERLHELA
                     EELQNSIQIRFEAESETGT"
                     /name="Rop family plasmid primer RNA-binding protein"
     Typing          1563..1648
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="97.701"
                     /coverage="100.0"
                     /evalue="1.86e-34"
     Typing          1959..2057
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="98.0"
                     /coverage="100.0"
                     /evalue="1.35e-41"
     Typing          2182..2429
                     /name="MOBF"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="91.6"
                     /coverage="86.0"
                     /evalue="3.5e-92"
     Typing          complement(992..1541)
                     /name="rep_cluster_2350"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="95.471"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 ttttctatta acgaagctaa ccattttcct gtttgtgttg aagcagcgtt cttgacagca
       61 atgttagaaa tttctttgga taaatcttgt acgatctcag cagtcaaatt ccttgttgca
      121 tagtatgcag tattaactgc atcatcgtcc tcagatggtc ctccgaagga aaacaccgct
      181 aaacactcta gttttgtatc aatcctatct agatcaaaac cttcacttct tgctatgtcc
      241 gcaattgaac gaagcataat tgtcgttgaa actggtaact caattgctaa tgcagaaaag
      301 ccaaaagcac caccaatggc tccagataag gcagcaaaga acttatttgt cttagttgat
      361 gctattcggt taggttcatt gtctaggctc cataaggctg cattagcagc tttgttgaga
      421 gatttttcta ctaggctata aattttcttt tctgctcctt tgggaagttt actcattaag
      481 taatctattg gggttccaac taattgggtt agtgtttctg taattgtatc ttgttctaat
      541 aattctacgg ctctttctaa agcgcgcaga tcttcttctt caagatgcat gtaaaaatcc
      601 cttatgaatc aatctgtagc ctactttttg taagtggtct gttttgggat cttaccttgg
      661 gagaattcag tgattcaacg ggcgagatgc cgatatcatt gttgtccgcg aagtaggagt
      721 gatgaaaaga tcaaaggatc ctcttgagat cctttttttc tgcgcgtaat ctgctgccag
      781 taaacgaaaa aaccgcctgg ggaggcggtt tagtcgaagg ttaagtcagt tggggactgc
      841 ttaaccgggt aactggcttg gtggagcaca gataccaaat actgtccttc tagtgtagcc
      901 gcagttaggc caccacttca agaactctta atatctcaat ccaccttgtc cagttaccag
      961 tggctgctgc cagtggcgct ttgtcgtgtc ttaccgggtt ggactcaaga cgatagttac
     1021 cggataaggc gcagcggtcg ggctgaacgg ggggttcgtg cacacagccc agcttggagc
     1081 gaacgaccta caccgaactg agataccaac agcgtgagct atgagaaagc gccacgcttc
     1141 ccgaagggag aaaggcggac aggtatccgg taagcggcag ggtcggaaca ggagagcgca
     1201 cgagggagcc accaggggga aacgcctggt atctttatag tcctgtcggg tttcgccacc
     1261 tctgacttga gcgtcgattt ttgtgatgct cgtcaggggg gcggagccta tggaaaaacg
     1321 ccagcggcgc ggcctttcgt tgccctttgc ctttttgctc acatgttctt tccggcctta
     1381 tcccctgatt ctgtggataa ccgtattacc gcctttgagt gagccggcac cgctcgccgc
     1441 agccgaacga ccgagcgtag cgagtcagtg agcgaggaag cggaagagcg cctgatgcgg
     1501 cattttctcc ttacgcatct gtgcggtatt tcacatcgca tatggtgctc ttttcttatc
     1561 atctgcactg atgctacata gttaagccag tatacactcc gctatcgcta cgtgactggg
     1621 tcatggctgc gccccgacac ccgctaaaac cccctgacgc gccctgacgg gcttgtctgc
     1681 tgacgaaaac gcccacggga aagccgtgac cgcctccgtc agcttcgtta tgttcctgtt
     1741 tcactttcgg cctcaaagcg aatctggatg ctgttctgga gttcttctgc gagttcgtgc
     1801 agtcgttcgc acatggccgc ctgttcgtca gcatccagag catccagttt ttcaagcagt
     1861 gtcaggctct ggcttttgat aaatcgcgcc atattcagcg cagtttgttg ttgtttgttc
     1921 accttccgtt gttctccgtc agttccgggt gtcgggggga ccctgagcag gtggtaattg
     1981 taagacgttg cgggcgacgg tattacaatt gcacatcctg tcctgtttct ttaggacgta
     2041 tcatggcaca gcatatcaac tgataaataa tccctgtgca gtgcagccgc tgttgcataa
     2101 aatttcgctc tgcgtcgagt gtttcttaac caataattcc gctgatactc cggaaaaacg
     2161 cgagtctgtt ctcatgcctg aaatgcccac accccacgca aaaacaattt tttgctgatt
     2221 tttctttata aatagagagt tatgacaaat tagttcttct tgctctcttt gtgatattta
     2281 aaaaagcggt gttggcgcag ctacaacacc gcgccgacac cgctttttag gggtggtact
     2341 gactattttc ataaaaaaca tcatcttata ttaggggggc tgctagctgc gcggtgtgtt
     2401 tttttacagg acgcccctgg gggcgctgcc aggagtgtct gttcagatat gtagcaatga
     2461 gtcagggatt cacgaactga aaatgtccga aaatgtgtct catgggcact gtatgcgccc
     2521 aaaccgatcg tcattcactt tcatgcatag ctatgcagtg agctgaaagc gagcctgacg
     2581 catttttccg gtttaccccg gggaaaacat ctctttttgc ggtgtttgcg gcagaatcgc
     2641 gttcagcgcg ttttagcggt gcgcgcaata cgggattatg gtaaatatga ttgatattcg
     2701 tagatgctgg gttaactatt tattttgtgc gtggagttga aattggtaat gattagaatg
     2761 gctatgacct ataaatgttt atcatgccat tggtgtaaaa ctgtgcctaa atgtagcgat
     2821 gttttagttg atggggggaa tgcttttagt cagtgcccaa attgtggctc tgttttagtt
     2881 gattcaaaaa aagccaattt cattaatgca gttgttgcga atataatgtt taaaataaaa
     2941 tcataaataa ttttgttgtt tgtgtgattg ttcgtgagtt gacaccctcc atagcacctg
     3001 gccataacgg tgctatgcac ttagtgaaac cgttagttgc tgttcaaatg cttccgttgg
     3061 ttctgattgg tgagtttatc tgagattttt atatattcag cctttatcaa ttcatcacca
     3121 tatttcctct caagtctttt gacaataaaa tgacctcgag ccatatcttg ataatagtcg
     3181 gtaaacatcg tgtttaatgt ggctccagcc agtgctccaa taacaggagc agcttgagct
     3241 gccatttttt ctgtaataac tataccaaat cttgtcgcaa ct
//
