LOCUS       NZ_CP148471             3282 bp    DNA     circular CON 05-APR-2024
DEFINITION  Escherichia coli strain Z1323CEC0006 plasmid pZ1323CEC0006-6,
            complete sequence.
ACCESSION   NZ_CP148471
VERSION     NZ_CP148471.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40441573
            Assembly: GCF_037575275.1
KEYWORDS    RefSeq.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 3282)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Complete genome sequence of Escherichia coli isolated from humans,
            companion animals, industrial animals and wild animals
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3282)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-MAR-2024) Division of biotechnology, Jeonbuk National
            University, kobongro, Iksan 54596, South Korea
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.4.9
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 122X
            Sequencing Technology :: Illumina NovaSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037575275.1-RS_2024_04_05
            Annotation Date                   :: 04/05/2024 20:25:39
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,841
            CDSs (total)                      :: 5,717
            Genes (coding)                    :: 5,392
            CDSs (with protein)               :: 5,392
            Genes (RNA)                       :: 124
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 90
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 325
            CDSs (without protein)            :: 325
            Pseudo Genes (ambiguous residues) :: 0 of 325
            Pseudo Genes (frameshifted)       :: 104 of 325
            Pseudo Genes (incomplete)         :: 225 of 325
            Pseudo Genes (internal stop)      :: 49 of 325
            Pseudo Genes (multiple problems)  :: 48 of 325
            Pseudo Genes (short protein)      :: 4 of 325
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP148471.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3282
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /strain="Z1323CEC0006"
                     /host="Chicken"
                     /db_xref="taxon:562"
                     /plasmid="pZ1323CEC0006-6"
                     /geo_loc_name="South Korea"
                     /collection_date="2023-02-24"
     gene            106..945
                     /locus_tag="WHU46_RS29155"
                     /old_locus_tag="WHU46_29155"
     CDS             106..945
                     /locus_tag="WHU46_RS29155"
                     /old_locus_tag="WHU46_29155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000546749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EcsC family protein"
                     /protein_id="WP_001677176.1"
                     /translation="MHLEEEDLRALERAVELLEQDTITETLTQLVGTPIDYLMSKLPKG
                     AEKKIYSLVEKSLNKAANAALWSLDNEPNRIASTKTNKFFAALSGAIGGAFGFSALAIE
                     LPVSTTIMLRSIADIARSEGFDLDRIDTKLECLAVFSFGGPSEDDDAVNTAYYATRNLT
                     AEIVQDLSKEISNIAVKNAASTQTGKWLASLIEKVATRFGIVITEKMAAQAAPVIGALA
                     GATLNTMFTDYYQDMARGHFIVKRLERKYGDELIKAEYIKISDKLTNQNQRKHLNSN"
                     /name="EcsC family protein"
     gene            2056..2250
                     /locus_tag="WHU46_RS29160"
                     /old_locus_tag="WHU46_29160"
     CDS             2056..2250
                     /locus_tag="WHU46_RS29160"
                     /old_locus_tag="WHU46_29160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001041627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_001041631.1"
                     /translation="MNKQQQTALNMARFIKSQSLTLLEKLDALDADEQAAMCERLHELA
                     EELQNSIQIRFEAESETGT"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            2915..3073
                     /locus_tag="WHU46_RS29165"
                     /old_locus_tag="WHU46_29165"
     CDS             2915..3073
                     /locus_tag="WHU46_RS29165"
                     /old_locus_tag="WHU46_29165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_071529495.1"
                     /translation="MHEPPVQPDRCALSGNYRLESNPVRHDKAPLAAATGNWTRWIEIL
                     RVLEVVA"
                     /name="replication initiation protein"
     Typing          complement(1547..1797)
                     /name="MOBF"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="91.304"
                     /coverage="87.0"
                     /evalue="3.5e-92"
     Typing          complement(1922..2020)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="98.0"
                     /coverage="100.0"
                     /evalue="1.35e-41"
     Typing          complement(2331..2416)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="97.701"
                     /coverage="100.0"
                     /evalue="1.86e-34"
     Typing          2438..2987
                     /name="rep_cluster_2350"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="95.471"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 tatcggcatc tcgcccgttg aatcactgaa ttctcccaag gtaagatccc aaaacagacc
       61 acttacaaaa agtaggctac agattgattc ataagggatt tttacatgca tcttgaagaa
      121 gaagatctgc gcgctttaga aagagccgta gaattattag aacaagatac aattacagaa
      181 acactaaccc aattagttgg aaccccaata gattacttaa tgagtaaact tcccaaagga
      241 gcagaaaaga aaatttatag cctagtagaa aaatctctca acaaagctgc taatgcagcc
      301 ttatggagcc tagacaatga acctaaccga atagcatcaa ctaagacaaa taagttcttt
      361 gctgccttat ctggagccat tggtggtgct tttggctttt ctgcattagc aattgagtta
      421 ccagtttcaa cgacaattat gcttcgttca attgcggaca tagcaagaag tgaaggtttt
      481 gatctagata ggattgatac aaaactagag tgtttagcgg tgttttcctt cggaggacca
      541 tctgaggacg atgatgcagt taatactgca tactatgcaa caaggaattt gactgctgag
      601 atcgtacaag atttatccaa agaaatttct aacattgctg tcaagaacgc tgcttcaaca
      661 caaacaggaa aatggttagc ttcgttaata gaaaaagttg cgacaagatt tggtatagtt
      721 attacagaaa aaatggcagc tcaagctgct cctgttattg gagcactggc tggagccaca
      781 ttaaacacga tgtttaccga ctattatcaa gatatggctc gaggtcattt tattgtcaaa
      841 agacttgaga ggaaatatgg tgatgaattg ataaaggctg aatatataaa aatctcagat
      901 aaactcacca atcagaacca acggaagcat ttgaacagca actaacggtt tcactaagtg
      961 catagcaccg ttatggccag gtgctatgga gggtgtcaac tcacgaacaa tcacacaaac
     1021 aacaaaatta tttatgattt tattttaaac attatattcg caacaactgc attaatgaaa
     1081 ttggcttttt ttgaatcaac taaaacagag ccacaatttg ggcactgact aaaagcattc
     1141 cccccatcaa ctaaaacatc gctacattta ggcacagttt tacaccaatg gcatgataaa
     1201 catttatagg tcatagccat tctaatcatt accaatttca actccacgca caaaataaat
     1261 agttaaccca gcatctacga atatcaatca tatttaccat aatcccgtat tgcgcgcacc
     1321 gctaaaacgc gctgaacgcg attctgccgc aaacaccgca aaaagagatg ttttccccgg
     1381 ggtaaaccgg aaaaatgcgt caggctcgct ttcagctcac tgcatagcta tgcatgaaag
     1441 tgaatgacga tcggtttggg cgcatacagt gcccatgaga cacattttcg gacattttca
     1501 gttcgtgaat ccctgactca ttgctacata tctgaacaga cactcctggc agcgccccca
     1561 ggggcgtcct gtaaaaaaac acaccgcgca gctagcagcc cccctaatat aagatgatgt
     1621 tttttatgaa aatagtcagt accaccccta aaaagcggtg tcggcgcggt gttgtagctg
     1681 cgccaacacc gcttttttaa atatcacaaa gagagcaaga agaactaatt tgtcataact
     1741 ctctatttat aaagaaaaat cagcaaaaaa ttgtttttgc gtggggtgtg ggcatttcag
     1801 gcatgagaac agactcgcgt ttttccggag tatcagcgga attattggtt aagaaacact
     1861 cgacgcagag cgaaatttta tgcaacagcg gctgcactgc acagggatta tttatcagtt
     1921 gatatgctgt gccatgatac gtcctaaaga aacaggacag gatgtgcaat tgtaataccg
     1981 tcgcccgcaa cgtcttacaa ttaccacctg ctcagggtcc ccccgacacc cggaactgac
     2041 ggagaacaac ggaaggtgaa caaacaacaa caaactgcgc tgaatatggc gcgatttatc
     2101 aaaagccaga gcctgacact gcttgaaaaa ctggatgctc tggatgctga cgaacaggcg
     2161 gccatgtgcg aacgactgca cgaactcgca gaagaactcc agaacagcat ccagattcgc
     2221 tttgaggccg aaagtgaaac aggaacataa cgaagctgac ggaggcggtc acggctttcc
     2281 cgtgggcgtt ttcgtcagca gacaagcccg tcagggcgcg tcagggggtt ttagcgggtg
     2341 tcggggcgca gccatgaccc agtcacgtag cgatagcgga gtgtatactg gcttaactat
     2401 gtagcatcag tgcagatgat aagaaaagag caccatatgc gatgtgaaat accgcacaga
     2461 tgcgtaagga gaaaatgccg catcaggcgc tcttccgctt cctcgctcac tgactcgcta
     2521 cgctcggtcg ttcggctgcg gcgagcggtg ccggctcact caaaggcggt aatacggtta
     2581 tccacagaat caggggataa ggccggaaag aacatgtgag caaaaaggca aagggcaacg
     2641 aaaggccgcg ccgctggcgt ttttccatag gctccgcccc cctgacgagc atcacaaaaa
     2701 tcgacgctca agtcagaggt ggcgaaaccc gacaggacta taaagatacc aggcgtttcc
     2761 ccctggtggc tccctcgtgc gctctcctgt tccgaccctg ccgcttaccg gatacctgtc
     2821 cgcctttctc ccttcgggaa gcgtggcgct ttctcatagc tcacgctgtt ggtatctcag
     2881 ttcggtgtag gtcgttcgct ccaagctggg ctgtgtgcac gaaccccccg ttcagcccga
     2941 ccgctgcgcc ttatccggta actatcgtct tgagtccaac ccggtaagac acgacaaagc
     3001 gccactggca gcagccactg gtaactggac aaggtggatt gagatattaa gagttcttga
     3061 agtggtggcc taactgcggc tacactagaa ggacagtatt tggtatctgt gctccaccaa
     3121 gccagttacc cggttaagca gtccccaact gacttaacct tcgactaaac cgcctcccca
     3181 ggcggttttt tcgtttactg gcagcagatt acgcgcagaa aaaaaggatc tcaagaggat
     3241 cctttgatct tttcatcact cctacttcgc ggacaacaat ga
//
