LOCUS       NZ_CP148470             4237 bp    DNA     circular CON 05-APR-2024
DEFINITION  Escherichia coli strain Z1323CEC0006 plasmid pZ1323CEC0006-5,
            complete sequence.
ACCESSION   NZ_CP148470
VERSION     NZ_CP148470.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40441573
            Assembly: GCF_037575275.1
KEYWORDS    RefSeq.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 4237)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Complete genome sequence of Escherichia coli isolated from humans,
            companion animals, industrial animals and wild animals
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4237)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-MAR-2024) Division of biotechnology, Jeonbuk National
            University, kobongro, Iksan 54596, South Korea
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.4.9
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 122X
            Sequencing Technology :: Illumina NovaSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037575275.1-RS_2024_04_05
            Annotation Date                   :: 04/05/2024 20:25:39
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,841
            CDSs (total)                      :: 5,717
            Genes (coding)                    :: 5,392
            CDSs (with protein)               :: 5,392
            Genes (RNA)                       :: 124
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 90
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 325
            CDSs (without protein)            :: 325
            Pseudo Genes (ambiguous residues) :: 0 of 325
            Pseudo Genes (frameshifted)       :: 104 of 325
            Pseudo Genes (incomplete)         :: 225 of 325
            Pseudo Genes (internal stop)      :: 49 of 325
            Pseudo Genes (multiple problems)  :: 48 of 325
            Pseudo Genes (short protein)      :: 4 of 325
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP148470.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4237
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /strain="Z1323CEC0006"
                     /host="Chicken"
                     /db_xref="taxon:562"
                     /plasmid="pZ1323CEC0006-5"
                     /geo_loc_name="South Korea"
                     /collection_date="2023-02-24"
     gene            complement(857..1570)
                     /locus_tag="WHU46_RS29130"
                     /old_locus_tag="WHU46_29130"
     CDS             complement(857..1570)
                     /locus_tag="WHU46_RS29130"
                     /old_locus_tag="WHU46_29130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001590713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion system protein"
                     /protein_id="WP_001590713.1"
                     /translation="MNKKLIFSVLLCLFSFGSVAGIPVAIDASPEWAVEATRWTERLKQ
                     WSETARHYQSQIQAYKDQLATATGIRNIAAFTNELSNLQSELANIYKQGNSYISDFTSN
                     PEGALSSQAKNLFSKYGAFNMCSTGIESSDNLCKARIVSTAASIEQGNEINKQLSSAMS
                     QIQSLSNRIESSKDMKESQDLANALQAQSLKIQAIKMQYDVWDSKNRADAEMLKEQKYA
                     EYRLRQKNAKIPSFE"
                     /name="type IV secretion system protein"
     gene            complement(1567..2565)
                     /locus_tag="WHU46_RS29135"
                     /old_locus_tag="WHU46_29135"
     CDS             complement(1567..2565)
                     /locus_tag="WHU46_RS29135"
                     /old_locus_tag="WHU46_29135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000012467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion system protein"
                     /protein_id="WP_052978250.1"
                     /translation="MSGFFEKFNSEVVSKIEEMTKPLQSQLGQDMLSLLSAGISVYILW
                     VGYQILAGKRQTPLQDLVWDLSKFAIILTFVSNADGYLTAAMDAIKSMKDGFLGKPVWA
                     TLDTMWSTTQLLADKVYAMDQSKYVSVEGGIGSMLVWGGSILIMSVAAVIYMLADVTMQ
                     LAILVAPIFIGCYMFGFTRVMFNNWLGILFSSVFTVIFAGVLVKIGTEFQTDMLSQISR
                     DANSTNILTMGAMAFVIGVLIAVFVWKSSSFAQQLAGAGVEGTLQGMALLGIGVAGMAV
                     EKTRNQMKRGTRTAAEWAGEKGEQKRASIGALGMEARRRASLEKARARNSA"
                     /name="type IV secretion system protein"
     gene            complement(2570..2833)
                     /locus_tag="WHU46_RS29140"
                     /old_locus_tag="WHU46_29140"
     CDS             complement(2570..2833)
                     /locus_tag="WHU46_RS29140"
                     /old_locus_tag="WHU46_29140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001677227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EexN family lipoprotein"
                     /protein_id="WP_000717655.1"
                     /translation="MKKICTLLMSIFILSACGEDTKSSDWWLNHPKEATEKYKECKKSG
                     EDSVNCQNVKKVAGIIGRTYGPMLEILKAESAEYDKQHGLNR"
                     /name="EexN family lipoprotein"
     gene            complement(2921..3328)
                     /locus_tag="WHU46_RS29145"
                     /old_locus_tag="WHU46_29145"
     CDS             complement(2921..3328)
                     /locus_tag="WHU46_RS29145"
                     /old_locus_tag="WHU46_29145"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_126709166.1"
                     /translation="MSKNDVFACACRRLLEVVAGEQKWCFVRLLITTTWLEVFMTKHDA
                     IRISQLHQIFYDDDGLIDSEKNVTILYSIGFTVDEIAHFRNSTPNTVAAQLLNARVKLG
                     CASVSSLKPMILLRLLLNIKEIRFGFETDCK"
                     /name="hypothetical protein"
     gene            complement(3391..3906)
                     /locus_tag="WHU46_RS29150"
                     /old_locus_tag="WHU46_29150"
     CDS             complement(3391..3906)
                     /locus_tag="WHU46_RS29150"
                     /old_locus_tag="WHU46_29150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000097059.1"
                     /GO_process="GO:0006260 - DNA replication [Evidence IEA];
                     GO:0006276 - plasmid maintenance [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication/maintenance protein RepL"
                     /protein_id="WP_000097059.1"
                     /translation="MSSLSLQRYETNPFLELMTIPMKGKRIQVSRLGRDDNVLVNQNTG
                     EKFGTHVTTFKRVDSEQFVKLFTANIGLTFDLSSAGIKAFNVLLWAVQKQAFAKDQVLL
                     DSRALDDFLKSYDSLKLSYATLKRGINELEKAQIIAKTMRKGFYFINPNFVFNGDRIAF
                     TTLIERDC"
                     /name="replication/maintenance protein RepL"
     Typing          complement(1763..2565)
                     /name="MPF_T"
                     /typing="mate-pair-formation"
                     /tool="MOB-suite"
                     /identity="89.552"
                     /coverage="91.0"
                     /evalue="1.41e-160"
ORIGIN
        1 atccagagca ccagaacgcg attttcaggt gttggtaatg ttttagtcgt cttagctctt
       61 aaaacgcgct cagacgcacg aaacgggctt tagatgcccg tcagggcatg gaaggcgcga
      121 aaaatgctta cagagggttt caggaggtca ggcgcgccga tacccctaac caggggcttt
      181 caggtcgcca ggaaccgcgc cagccccctg caaagcccat tagcacggaa caggtagcca
      241 cacggttggt aggtggtcgt agaccgtcga tgttacagcg atgggggtct ggggttctcc
      301 ccagacggtt tccggttgcg ctcaaggcgc tgccggaacc gtggcggctc ggtggttcta
      361 gagatcggga aacaaaaaca cgctaggggt tttgaggtcg gcaaaagagc aatgcaggat
      421 agacaatcat ggtcaaaatg ttaacatttt atccatgatt gtccaaaaac gatgtttttg
      481 cctgtgcctg ccgcaggctc tatatttaga atttagaata gaaaaggcca tctattcgat
      541 gacctttatt ttttacttca ttgaaaatcg cattactatt aataacagaa gtaaaataca
      601 aaacagcttt aacgtaaaaa ggagtctttc ttttatacca ccgctgggaa caaacctctt
      661 ttcaatttta tcagtgataa attgcaatgt accataatac attaaagcat taaccagctt
      721 taacgtaagc tccacactta aaacaataac tatgattggt agcgagatta acagtggcgg
      781 cggtgtagaa ccggtactat tcaatctaga ccaatgatta tctacccatt cttttagctt
      841 atttagcttt atcatatcat tcgaaactcg gtatctttgc atttttctga cgcaggcgat
      901 actcagcata cttttgctct ttcaacattt ccgcatcagc cctgttttta ctatcccata
      961 catcatactg cattttaatt gcctgtattt ttaacgactg cgcctgcaat gcgttagcca
     1021 aatcctggga ttctttcata tcctttgaag actcaattcg gttacttaaa ctctgaatct
     1081 gagacattgc acttgatagc tgcttattta tctcatttcc ctgttcaatg ctagcggccg
     1141 ttgaaactat tctggcctta caaaggttat cagaactttc aatgcctgta gaacacatat
     1201 taaaagcacc atacttgctg aacagatttt tcgcctgact acttaatgca ccttcaggat
     1261 tactggtaaa atcagaaata taactgttcc cctgcttata aatgtttgcc agctctgatt
     1321 gtaggttact tagttcattt gtgaatgccg caatattcct tatacctgtt gccgtggcta
     1381 actggtcttt atatgcctga atctgacttt gataatgccg cgctgtttca gaccattgtt
     1441 tgagtcgttc tgtccatctt gtggcttcaa cagcccattc cggactggca tcaatagcaa
     1501 ccggaatacc tgcgacagaa ccaaatgaaa ataagcacaa aagtactgaa aaaattagtt
     1561 ttttgttcat gctgaattcc tcgcacgtgc tttttccagg gatgctcgtc ttcttgcttc
     1621 cattcccaat gcgcctattg aagcccgttt ctgctcccct ttttcacctg cccattcggc
     1681 ggctgttcgc gttccacgtt tcatctggtt tctcgttttc tctacggcca ttccagcaac
     1741 cccaatccct aaaagagcca ttccctgaag agtaccttca acacctgcac cggcaagctg
     1801 ctgcgcgaaa ctcgatgatt tccagacaaa gacagcaatc agaactccaa ttacaaatgc
     1861 cattgcgccc attgttaaaa tatttgttga gttagcatct ctcgatatct gactaagcat
     1921 atcagtttga aactcggtac caattttgac gagaactcca gcaaaaataa cagtaaatac
     1981 actagaaaat aatataccaa gccagttatt aaacattact ctagtgaatc caaacatata
     2041 acaaccgata aatatcggag ctacaagaat agctaactgc attgttacat cggcaagcat
     2101 gtaaataaca gccgctacag acataatcag gatacttcct ccccaaacca acattgaccc
     2161 gattccacct tcaactgaca catatttgga ttgatccata gcataaactt tgtcagccaa
     2221 aagctgagtt gtactccaca tggtatctag cgttgcccat acaggtttac caaggaaccc
     2281 atccttcata gatttaatag catccattgc tgccgtcaga tagccatcag cattgcttac
     2341 gaatgttaaa ataatggcaa attttgatag atcccagacg agatcttgta atggggtctg
     2401 gcgtttccct gccaatattt gatagccaac ccagaggata taaacgctaa tacctgcact
     2461 tagaagagat aacatatcct gacctaattg actttgaagt ggtttggtca tctcttcgat
     2521 tttactaaca acttcgctat taaacttttc aaagaaacca gacatgttat cacctgttca
     2581 atccatgttg cttatcatat tcagctgact cagccttaag tatttcaagc atagggccat
     2641 aggttctacc aataattccg gcaacttttt taacattttg acaattaaca gaatcttccc
     2701 ctgacttttt acactcctta tatttctccg tcgcttcttt gggatgatta agccaccaat
     2761 ctgatgattt tgtatcttca ccacatgcgg aaagaatgaa aatagacatt aagagcgtac
     2821 aaattttttt catctttgat tcctcgtatg gacattacaa ttgctgatac aatcagcaat
     2881 tgtaattcta gtcaagagca aaaataccta ttgaactata ttatttgcaa tcagtttcga
     2941 atccaaaacg aatctctttt atgttcaaaa gcaatcttaa taagatcatt ggctttaaag
     3001 atgaaaccga ggcgcaacct aatttaaccc ttgcatttaa tagctgagcc gcaactgtgt
     3061 ttggtgttga atttctaaaa tgagctattt catcaactgt aaatcctata ctgtataaaa
     3121 tagtcacgtt cttttctgaa tcaattaatc catcatcatc gtaaaaaatt tgatgaagtt
     3181 gagaaatgcg tatagcatca tgtttagtca taaaaacctc tagccaggtt gttgtgatta
     3241 gcaggcgaac aaaacaccac ttttgttcgc ctgcgactac ttctagtagc ctgcggcagg
     3301 cacaggcaaa aacatcgttt ttggacaatc tgattcaaat gttaacattt gacatcggat
     3361 tgtctatcct gcattgtatt gttctatcga ttaacaatcc ctctcaatta gggttgtaaa
     3421 tgctattcga tctccattaa atacaaaatt ggggtttata aaataaaatc ctttacgcat
     3481 tgtctttgct ataatctgag ctttttctaa ctcgttaatt cctctcttta acgtagcata
     3541 actaagtttt aagctatcat agctttttaa aaagtcatca agagcccttg aatccaaaag
     3601 aacctgatcc tttgcaaagg cttgtttttg aacagcccat aaaagaacat taaaagcttt
     3661 aattcctgcc gatgataaat caaacgttaa cccaatattc gcagtaaaca acttaacaaa
     3721 ttgctcacta tctacacgct taaaagtggt tacatgtgtt ccaaactttt ctcccgtgtt
     3781 ttgattaacc aaaacattgt catcccgccc aagacgagat acttgtatcc gtttcccttt
     3841 catcgggatc gtcataagct ctaaaaacgg gtttgtttcg tatctctgta agcttagcga
     3901 gctcattatt gcatcctttt ttgggctttg gagattcaca ataaatcctc ataagctcaa
     3961 aatcaagcaa tttttgagcc tgcaaggtac cggatctgag cttacaaggt acagatcctg
     4021 atcaccactt tctaggattc atgcgggttc cgagaatttc ccttcttagt tcttaactaa
     4081 ggagcgtagg tgctcaatta tggctatcaa ttctcttccg cttcctcgcc cactcgctca
     4141 ctacgttcgg tcgctggggc tgcggcgagc gggatcacct ctcgcatgtt gtcagaaatg
     4201 ccgttgctgt tctgttcgaa aatgcgttct gtgggcc
//
