LOCUS       NZ_CP148451             2835 bp    DNA     circular CON 05-APR-2024
DEFINITION  Escherichia coli strain Z1323CEC0010 plasmid pZ1323CEC0010-7,
            complete sequence.
ACCESSION   NZ_CP148451
VERSION     NZ_CP148451.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40441577
            Assembly: GCF_037572835.1
KEYWORDS    RefSeq.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 2835)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Complete genome sequence of Escherichia coli isolated from humans,
            companion animals, industrial animals and wild animals
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2835)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-MAR-2024) Division of biotechnology, Jeonbuk National
            University, kobongro, Iksan 54596, South Korea
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.4.9
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 127X
            Sequencing Technology :: Illumina NovaSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037572835.1-RS_2024_04_05
            Annotation Date                   :: 04/05/2024 20:28:08
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,592
            CDSs (total)                      :: 5,462
            Genes (coding)                    :: 5,150
            CDSs (with protein)               :: 5,150
            Genes (RNA)                       :: 130
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 97
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 312
            CDSs (without protein)            :: 312
            Pseudo Genes (ambiguous residues) :: 0 of 312
            Pseudo Genes (frameshifted)       :: 93 of 312
            Pseudo Genes (incomplete)         :: 220 of 312
            Pseudo Genes (internal stop)      :: 57 of 312
            Pseudo Genes (multiple problems)  :: 55 of 312
            Pseudo Genes (short protein)      :: 4 of 312
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP148451.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2835
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /strain="Z1323CEC0010"
                     /host="Chicken"
                     /db_xref="taxon:562"
                     /plasmid="pZ1323CEC0010-7"
                     /geo_loc_name="South Korea"
                     /collection_date="2023-02-27"
     gene            693..1067
                     /locus_tag="WHU12_RS27940"
                     /old_locus_tag="WHU12_27940"
     CDS             693..1067
                     /locus_tag="WHU12_RS27940"
                     /old_locus_tag="WHU12_27940"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_061335866.1"
                     /translation="MNGMSDVRLKKSTIESLKEYVNDFGMTVDDVVLNLIEENNSLKSL
                     LGQGFSLPGGDKDTHSFKDYVIHKLPKGKILVTKDGLKVSNMKKVLIEAGSAVGMDDKE
                     LNPDFTTYEIGRFLFKHLQG"
                     /name="hypothetical protein"
     gene            complement(1256..>1357)
                     /locus_tag="WHU12_RS27945"
                     /old_locus_tag="WHU12_27945"
                     /pseudo=""
     CDS             complement(1256..>1357)
                     /locus_tag="WHU12_RS27945"
                     /old_locus_tag="WHU12_27945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011847251.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="IS30 family transposase"
                     /name="IS30 family transposase"
     gene            2503..2652
                     /locus_tag="WHU12_RS27950"
                     /old_locus_tag="WHU12_27950"
     CDS             2503..2652
                     /locus_tag="WHU12_RS27950"
                     /old_locus_tag="WHU12_27950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017880354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001138880.1"
                     /translation="MPSEYDEQLDSTDTQLPGEYDLFDLMAQVTEENLHAPVDFGSPVG
                     REAL"
                     /name="hypothetical protein"
     Typing          complement(1679..2174)
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="95.171"
                     /coverage="82.0"
                     /evalue="0.0"
ORIGIN
        1 tgaggttgaa aaataatcaa ccatggcggg tgatttacgc aggttaaggg gagatcgtga
       61 caaaaaaagc gttcctcact gtatcgttca tgcctgcatg aacgggttat tcttcctgac
      121 tacagaatta catcgctcct tcagttcata catcactttt acatcactta tacatcactt
      181 ttacatcact tatacatcac ttttacatca ttccttcagc tcatacgtca ctttcatcct
      241 ctgtgccatt tgtacatcac ccccttcctg aacgtgctga cagcgggttt tccggctgcg
      301 ccggcaacgc ttcacggcca cgcaataaat tgcgtccccg ttcaccgttt tcggatggga
      361 agaacgccgg aaacaggact taccccggct gaatggtgtg aatttccgcg ctatgcactt
      421 gtgcgcatac tcatgcatgc cgtaaaaaca gagcctgcgc gtttctggcg ggttttcggg
      481 tggtttgttg cctgttttac cggtttcccg tcagaaacgc cctgagggcc tctcaggcgg
      541 tgctgataac ggatgttatg ttcaatctgg cggtgcggca tagttatcat cgcacctaca
      601 gaccgcttgt tgtattcaga acaatattta tttgtataat ttgtattttg ttgtattatt
      661 tcttcaaatt agagcggtgg ggtaataata atatgaatgg tatgtctgac gtaagactaa
      721 agaaatcaac tattgagagc ctaaaagagt acgtgaatga ctttggcatg acggttgatg
      781 atgttgtcct gaacttaatt gaagagaata attcattaaa atcgttatta ggtcagggct
      841 tttctttgcc tggtggagat aaggacacac attccttcaa ggattacgtg attcataagc
      901 ttccaaaagg aaagatcttg gttaccaaag acgggcttaa agttagcaac atgaagaagg
      961 tattgatcga ggcagggagc gctgtaggga tggatgataa agagctaaac cctgacttta
     1021 cgacctatga aataggccgt tttctcttca aacatcttca gggataaagg tgtctaccag
     1081 ttcgtggccg ggattttagg ttcaattcag ctagttcccg gacagaaaaa aagccaccgt
     1141 gtaggtggct tttttattcc tgctttaggc aaagcattat tgatagcatt tgcaagcaaa
     1201 ccgttagcga cttctgctga atgcttctgg gcggattcaa gttcgaagtg caacgctaag
     1261 ccgcctgtct tagctcagca aagaccactg aaggttgccg gaatccaaga catttccgtg
     1321 gcctgctatt cagtgctctc tggtacttgc ggagctcccc tgtgtgataa gtcaggtgtg
     1381 gaatttttac gtataaggcc ccgctaggcg gaaaccaata ctgaagccaa atcactggta
     1441 aacagccgga tcttcttgtg atccttttac tctcgtcgta atctcatgtc ctgtaaacaa
     1501 aaaaaccacc gctaccaacg gtggttcgtt tgccggaatc aagagctacc aactctttct
     1561 tccgaaggta actggctttc acggagcgca gataccaaaa ctgtccttcc agtgtagccg
     1621 cagtcaggcc gccacttcaa gaactctgta gaagcactct actaccctgc tccgtgaatc
     1681 ctcttaccaa tggctgctgc caatggcgtt aagtcgtgtc tttccgggtt ggactcaaga
     1741 cgatagttac cggacaaggc gcagcggtcg gactgaacgg ggggttcgtg catacagtcc
     1801 agcttggagc gaactgccta cccggaactg agtgtcaggc gtggaatgag ataaacgcgg
     1861 ccataacagc ggaatgacac cggtaaaccg aaaggcagga acaggagagc gcacgaggga
     1921 gccaccaggg ggaaacgcct ggtatcttta agtcctgtcg ggtttcgcca ccactgattt
     1981 gagcgtcaga tttcgtgatg cttgtcaggg gggcggagcc tatggaaaaa cggcttcgcc
     2041 gtggccttct tgcttccctg ttaagcttct tcctggaaga tgccaggaaa tttccgcccc
     2101 gccagtaagc cggtaccgct cgccgcagcc gaacgaccga gcggagcgag tcagtgagcg
     2161 aggaagcgga atatctccgg gcttatcttt ggcaccgtac gcgccatagc tgcatttttt
     2221 aatacgatgc aggatagggc aaacgccgca aaatgacgtc atccgacatc attccgccgc
     2281 gttcgtccag tgacctacag tcggctctgg ggtgtcgggg ctgtgccctg accaggcgtt
     2341 ttggagtatc gccaccgtgg tggcggtgct acaaaacata tcctgtccct tccttggcat
     2401 ctctgaagtt tagccagtat acactccgct agcgctacat gactggttca gggctgcgcc
     2461 ccgaaacccg ctaacaacct ctcagctact ggatatcacc ccatgccatc tgaatatgat
     2521 gaacaactgg attcgactga tacgcagctt cccggcgaat atgacctttt tgatttaatg
     2581 gcgcaggtta ctgaagagaa cctgcatgcc cctgtggatt ttgggtcgcc tgtcggccgg
     2641 gaagcgttat agctttttcg cttgcccgcg tacgtggtaa tactccggta ttacctttta
     2701 tttctttatt ttcatgtaat tacagtggat ttttaatacc cgggtattac tcgtgaaaac
     2761 gaaatattcc ttttttttct tttaattcat gcagttgcga tgaaaatcgc ggctgcgtta
     2821 ggtgtatgac cattt
//
