LOCUS       NZ_CP148444             2835 bp    DNA     circular CON 05-APR-2024
DEFINITION  Escherichia coli strain Z1323CEC0011 plasmid pZ1323CEC0011-5,
            complete sequence.
ACCESSION   NZ_CP148444
VERSION     NZ_CP148444.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40441578
            Assembly: GCF_037571465.1
KEYWORDS    RefSeq.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 2835)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Complete genome sequence of Escherichia coli isolated from humans,
            companion animals, industrial animals and wild animals
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2835)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-MAR-2024) Division of biotechnology, Jeonbuk National
            University, kobongro, Iksan 54596, South Korea
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.4.9
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 106X
            Sequencing Technology :: Illumina NovaSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037571465.1-RS_2024_04_05
            Annotation Date                   :: 04/05/2024 20:17:32
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,718
            CDSs (total)                      :: 5,580
            Genes (coding)                    :: 5,223
            CDSs (with protein)               :: 5,223
            Genes (RNA)                       :: 138
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 105
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 357
            CDSs (without protein)            :: 357
            Pseudo Genes (ambiguous residues) :: 0 of 357
            Pseudo Genes (frameshifted)       :: 109 of 357
            Pseudo Genes (incomplete)         :: 266 of 357
            Pseudo Genes (internal stop)      :: 56 of 357
            Pseudo Genes (multiple problems)  :: 66 of 357
            Pseudo Genes (short protein)      :: 4 of 357
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP148444.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2835
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /strain="Z1323CEC0011"
                     /host="Chicken"
                     /db_xref="taxon:562"
                     /plasmid="pZ1323CEC0011-5"
                     /geo_loc_name="South Korea"
                     /collection_date="2023-02-27"
     gene            941..1090
                     /locus_tag="WHU71_RS28580"
                     /old_locus_tag="WHU71_28580"
     CDS             941..1090
                     /locus_tag="WHU71_RS28580"
                     /old_locus_tag="WHU71_28580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017880354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001138880.1"
                     /translation="MPSEYDEQLDSTDTQLPGEYDLFDLMAQVTEENLHAPVDFGSPVG
                     REAL"
                     /name="hypothetical protein"
     gene            1966..2340
                     /locus_tag="WHU71_RS28585"
                     /old_locus_tag="WHU71_28585"
     CDS             1966..2340
                     /locus_tag="WHU71_RS28585"
                     /old_locus_tag="WHU71_28585"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_061335866.1"
                     /translation="MNGMSDVRLKKSTIESLKEYVNDFGMTVDDVVLNLIEENNSLKSL
                     LGQGFSLPGGDKDTHSFKDYVIHKLPKGKILVTKDGLKVSNMKKVLIEAGSAVGMDDKE
                     LNPDFTTYEIGRFLFKHLQG"
                     /name="hypothetical protein"
     gene            complement(2529..>2630)
                     /locus_tag="WHU71_RS28590"
                     /old_locus_tag="WHU71_28590"
                     /pseudo=""
     CDS             complement(2529..>2630)
                     /locus_tag="WHU71_RS28590"
                     /old_locus_tag="WHU71_28590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011847251.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="IS30 family transposase"
                     /name="IS30 family transposase"
     Typing          complement(117..612)
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="95.171"
                     /coverage="82.0"
                     /evalue="0.0"
ORIGIN
        1 cgaaggtaac tggctttcac ggagcgcaga taccaaaact gtccttccag tgtagccgca
       61 gtcaggccgc cacttcaaga actctgtaga agcactctac taccctgctc cgtgaatcct
      121 cttaccaatg gctgctgcca atggcgttaa gtcgtgtctt tccgggttgg actcaagacg
      181 atagttaccg gacaaggcgc agcggtcgga ctgaacgggg ggttcgtgca tacagtccag
      241 cttggagcga actgcctacc cggaactgag tgtcaggcgt ggaatgagat aaacgcggcc
      301 ataacagcgg aatgacaccg gtaaaccgaa aggcaggaac aggagagcgc acgagggagc
      361 caccaggggg aaacgcctgg tatctttaag tcctgtcggg tttcgccacc actgatttga
      421 gcgtcagatt tcgtgatgct tgtcaggggg gcggagccta tggaaaaacg gcttcgccgt
      481 ggccttcttg cttccctgtt aagcttcttc ctggaagatg ccaggaaatt tccgccccgc
      541 cagtaagccg gtaccgctcg ccgcagccga acgaccgagc ggagcgagtc agtgagcgag
      601 gaagcggaat atctccgggc ttatctttgg caccgtacgc gccatagctg cattttttaa
      661 tacgatgcag gatagggcaa acgccgcaaa atgacgtcat ccgacatcat tccgccgcgt
      721 tcgtccagtg acctacagtc ggctctgggg tgtcggggct gtgccctgac caggcgtttt
      781 ggagtatcgc caccgtggtg gcggtgctac aaaacatatc ctgtcccttc cttggcatct
      841 ctgaagttta gccagtatac actccgctag cgctacatga ctggttcagg gctgcgcccc
      901 gaaacccgct aacaacctct cagctactgg atatcacccc atgccatctg aatatgatga
      961 acaactggat tcgactgata cgcagcttcc cggcgaatat gacctttttg atttaatggc
     1021 gcaggttact gaagagaacc tgcatgcccc tgtggatttt gggtcgcctg tcggccggga
     1081 agcgttatag ctttttcgct tgcccgcgta cgtggtaata ctccggtatt accttttatt
     1141 tctttatttt catgtaatta cagtggattt ttaatacccg ggtattactc gtgaaaacga
     1201 aatattcctt ttttttcttt taattcatgc agttgcgatg aaaatcgcgg ctgcgttagg
     1261 tgtatgacca ttttgaggtt gaaaaataat caaccatggc gggtgattta cgcaggttaa
     1321 ggggagatcg tgacaaaaaa agcgttcctc actgtatcgt tcatgcctgc atgaacgggt
     1381 tattcttcct gactacagaa ttacatcgct ccttcagttc atacatcact tttacatcac
     1441 ttatacatca cttttacatc acttatacat cacttttaca tcattccttc agctcatacg
     1501 tcactttcat cctctgtgcc atttgtacat cacccccttc ctgaacgtgc tgacagcggg
     1561 ttttccggct gcgccggcaa cgcttcacgg ccacgcaata aattgcgtcc ccgttcaccg
     1621 ttttcggatg ggaagaacgc cggaaacagg acttaccccg gctgaatggt gtgaatttcc
     1681 gcgctatgca cttgtgcgca tactcatgca tgccgtaaaa acagagcctg cgcgtttctg
     1741 gcgggttttc gggtggtttg ttgcctgttt taccggtttc ccgtcagaaa cgccctgagg
     1801 gcctctcagg cggtgctgat aacggatgtt atgttcaatc tggcggtgcg gcatagttat
     1861 catcgcacct acagaccgct tgttgtattc agaacaatat ttatttgtat aatttgtatt
     1921 ttgttgtatt atttcttcaa attagagcgg tggggtaata ataatatgaa tggtatgtct
     1981 gacgtaagac taaagaaatc aactattgag agcctaaaag agtacgtgaa tgactttggc
     2041 atgacggttg atgatgttgt cctgaactta attgaagaga ataattcatt aaaatcgtta
     2101 ttaggtcagg gcttttcttt gcctggtgga gataaggaca cacattcctt caaggattac
     2161 gtgattcata agcttccaaa aggaaagatc ttggttacca aagacgggct taaagttagc
     2221 aacatgaaga aggtattgat cgaggcaggg agcgctgtag ggatggatga taaagagcta
     2281 aaccctgact ttacgaccta tgaaataggc cgttttctct tcaaacatct tcagggataa
     2341 aggtgtctac cagttcgtgg ccgggatttt aggttcaatt cagctagttc ccggacagaa
     2401 aaaaagccac cgtgtaggtg gcttttttat tcctgcttta ggcaaagcat tattgatagc
     2461 atttgcaagc aaaccgttag cgacttctgc tgaatgcttc tgggcggatt caagttcgaa
     2521 gtgcaacgct aagccgcctg tcttagctca gcaaagacca ctgaaggttg ccggaatcca
     2581 agacatttcc gtggcctgct attcagtgct ctctggtact tgcggagctc ccctgtgtga
     2641 taagtcaggt gtggaatttt tacgtataag gccccgctag gcggaaacca atactgaagc
     2701 caaatcactg gtaaacagcc ggatcttctt gtgatccttt tactctcgtc gtaatctcat
     2761 gtcctgtaaa caaaaaaacc accgctacca acggtggttc gtttgccgga atcaagagct
     2821 accaactctt tcttc
//
