LOCUS       NZ_CP148425             4814 bp    DNA     circular CON 05-APR-2024
DEFINITION  Escherichia coli strain Z1323CEC0015 plasmid pZ1323CEC0015-3,
            complete sequence.
ACCESSION   NZ_CP148425
VERSION     NZ_CP148425.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40441582
            Assembly: GCF_037565025.1
KEYWORDS    RefSeq.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 4814)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Complete genome sequence of Escherichia coli isolated from humans,
            companion animals, industrial animals and wild animals
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4814)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-MAR-2024) Division of biotechnology, Jeonbuk National
            University, kobongro, Iksan 54596, South Korea
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.4.9
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 126X
            Sequencing Technology :: Illumina NovaSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037565025.1-RS_2024_04_05
            Annotation Date                   :: 04/05/2024 20:13:46
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,873
            CDSs (total)                      :: 4,755
            Genes (coding)                    :: 4,494
            CDSs (with protein)               :: 4,494
            Genes (RNA)                       :: 118
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 90
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 261
            CDSs (without protein)            :: 261
            Pseudo Genes (ambiguous residues) :: 0 of 261
            Pseudo Genes (frameshifted)       :: 122 of 261
            Pseudo Genes (incomplete)         :: 139 of 261
            Pseudo Genes (internal stop)      :: 46 of 261
            Pseudo Genes (multiple problems)  :: 43 of 261
            Pseudo Genes (short protein)      :: 2 of 261
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP148425.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4814
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /strain="Z1323CEC0015"
                     /host="Chicken"
                     /db_xref="taxon:562"
                     /plasmid="pZ1323CEC0015-3"
                     /geo_loc_name="South Korea"
                     /collection_date="2023-03-08"
     gene            1596..1754
                     /locus_tag="WHU31_RS24360"
                     /old_locus_tag="WHU31_24360"
     CDS             1596..1754
                     /locus_tag="WHU31_RS24360"
                     /old_locus_tag="WHU31_24360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001326446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001403044.1"
                     /translation="MHEPPVQSDCCACSGNYRLESNPERHDKTPLAAAIGIWFTERRGV
                     YKHTQSS"
                     /name="hypothetical protein"
     gene            complement(1943..3475)
                     /locus_tag="WHU31_RS24365"
                     /old_locus_tag="WHU31_24365"
     CDS             complement(1943..3475)
                     /locus_tag="WHU31_RS24365"
                     /old_locus_tag="WHU31_24365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017899153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NERD domain-containing protein"
                     /protein_id="WP_338928907.1"
                     /translation="MKKSVVRQVLEMSGPCISSDLAERIQWQYPSMSPEAIRKIISRST
                     DIGKLPFLKFSHNRRFIYLKDDFGSFKFWRALEKCMYEANSTYSHAILAVINNGGYLKV
                     KDFGIVSGSPIKQAKHLSYETVLRNLLSAKILRAVYIDGVGDCVLINNNIANDVNIRTM
                     ANCESFFDKPIFELVKAWLRNLGLVAFNQIKTKYDGEGNPVVGSFEWDMTAPSYVSPLA
                     EYVGGKLMPGFVACDFSLGFNRDEITTAAAETFIRKVQMTKSSRASQRIMFVIFARRFG
                     KIAFNKLRSEGVLAVTIANAFGNKVDESLTRLSRVVQGSLSIEKHPDELLQMVKDLESV
                     SGENGNLRGYVFELFVSSQISNFYGLGNIYINREYKINGKHAEADVVLESSDDIYIIEC
                     KNVKVLPSTELTRWMKERVPIINSYYKINNLEKKNIHHYLWVTGNVYNKDLKRLDSFKN
                     NNKNIDVDYLFGEHLDDFFYKKKRVFNLYRKVISPDYKKGVMPDFELEDDFF"
                     /name="NERD domain-containing protein"
     Typing          1417..1895
                     /name="rep_cluster_2358"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="97.723"
                     /coverage="91.0"
                     /evalue="0.0"
     Typing          4564..4814
                     /name="rep_cluster_2373"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="99.605"
                     /coverage="100.0"
                     /evalue="5.15e-127"
ORIGIN
        1 cttttcgaga gctcgccaaa atttgaaact gccaaaatca tcttttagat aaatgaatct
       61 cctgttatgg ctgaatttca aaaatggcag cttacctatg tccgtgcttc gcgagatcat
      121 tttacgtatc gcttcagggg acattgaggg atattgccac tgaattctct ctgcaagatc
      181 cgaagagatg catggcccgc tcatttcaag cacctgtcta acaacacttt ttttcatatc
      241 ctcaccttat ttctgtcaca ctacgctatt tataatatta cactacgtgt aatagggcgc
      301 agtcttttaa aaaaaagtga ctataaaaaa taattaaaaa tcagatggtt aattacttac
      361 tttaaattga gcacaaagaa atatcgtctt tataattatt taatcctttt aaatcataaa
      421 gatagtattg tgacattttt ttatcgaact atcagctact ccatttacca taacatccgt
      481 tgcccgcacc atctcagacg ccctcagagc atttctgcgc cctcctgcct atttccggca
      541 tctttccctg tccatatcgt gaaaaaacgc gcctgatgat ttcttcgcgt ctgcatggct
      601 atgcatacga acgcatggac gtcattttag cggctaaaat ccggcgagcg ccctgaaagc
      661 caccacgaac cccaccgata acggtgaaag ggtgcgcagt ttactgtgcg accgtgaggc
      721 gttggccagg ccgtcaggca tggcaggatt tattgctaag ggggtcggat ttaacctgga
      781 ttaatcagca cacagtgatg aacgggattc ggaaggggca cccttgcggc gcggcgatgt
      841 atacatcgct aacgtgcctt gtttatggag cgcaaaaaga gagtggtagc agtccgatag
      901 caaaaaagta gcaaaaagat agcaaaagga gagcaaccga aaggctcaaa ggcccctgaa
      961 atagcaaaaa gatagcaaaa aaatagcaaa aaagtagcaa acatacggtg tcgggcggaa
     1021 cctgaccagg agtcattggc gtgccggcgg tactccaaaa atacatcttg tcccgctgtc
     1081 gtgtagccac aaaacatttc ctgtccgctg ctttaacctt tgtaatccag gaacgtcagg
     1141 tgacgtcact ttgcggcgtt cgccctatcc tgcatcgtat taaaaaatgc agctatggcg
     1201 cgtacggtgc caaagagaag cccgcagata ttccgcttcc tcgctcactg actcgctccg
     1261 ctcggtcgtt cggctgcggc gagcggaggg aacagagaca ttaagccata ggcaatgaga
     1321 gagaatggag aagcaacaag aaaggccgcg gcgttgccgg ttttccatag gctccgcccc
     1381 cctgacaagc atcacagaat ctgacgctca aatcagtggt ggcgaacccc gacaggacta
     1441 taaaatccca ggcgtttccc ctggtagctc cctcgtgcgc tctcctgttc ctgcctttcg
     1501 gtttaccggt gtcactccgc tgttatggcc gcgtttatct cattccacgc ctgacactca
     1561 gttccgggaa ggcagttcgc tccaagctgg actgtatgca cgaacccccc gttcagtccg
     1621 actgctgcgc ctgttccggt aactatcgac ttgagtccaa cccggaaaga cacgacaaaa
     1681 cgccactggc agcagccatt ggtatctggt ttacggagcg gagaggcgtg tacaagcata
     1741 cacagagttc ttgaagtgtt gacctgacta cggctacact ggaaggacag atttggtcac
     1801 tgcgctccgt ttaagccagt taccacggtt cagaaacttg ccggtttcct gaaccttcga
     1861 aaaaccacct tgccgggtgg ttttttcgtt tcagagatgg aagatacgcc tttcaaagcg
     1921 ccatcgtcaa gaaacgcagt agctagaaaa aatcgtcctc taactcaaaa tcaggcatta
     1981 cgcctttttt ataatcaggt gaaatgactt ttctatataa gttgaacacc cgctttttct
     2041 tgtaaaagaa atcatccaaa tgctcaccaa acaaataatc aacatcgata ttcttattat
     2101 tattcttaaa agagtctaac ctttttaaat ctttgttgta cacattccct gtaacccaca
     2161 aataatggtg gatattcttt ttttctaaat tatttatttt atagtaagag tttataattg
     2221 gaaccctttc tttcatccaa cgcgtaagtt cagttgaagg taagacctta acatttttgc
     2281 actctattat ataaatatcg tcactactct ccaatacaac atcagcttct gcatgcttac
     2341 catttatctt atactctcta ttaatgtaaa tattaccaag gccataaaaa ttagaaattt
     2401 gcgaggatac aaaaagctca aaaacatacc ctctcaaatt gccattctct ccagaaacag
     2461 actccagatc tttaaccatc tgaagcaact catctggatg cttttcaatg gacaaagaac
     2521 cctgaaccac cctcgacaac ctggttaagc tttcatcaac tttattacca aacgcatttg
     2581 ctatagttac agccagaacc ccctcacttc tcaacttatt gaaggctatt ttgccgaaac
     2641 gccttgcgaa aataacaaac attatcctct gactcgctcg agaagacttg gtcatctgga
     2701 cttttcttat gaatgtttct gctgcagcgg tagtaatttc atcacgatta aagccgagag
     2761 aaaaatcaca ggcaacgaaa ccaggcatca gttttccgcc gacatattca gcgagagggg
     2821 aaacgtaact tggagcggtc atatcccatt caaaagagcc tacaactgga tttccctccc
     2881 catcatattt tgtttttatc tgattaaaag cgactaggcc taaattcctc aaccaagctt
     2941 taacaagctc aaatattggt ttgtcaaaaa aggattcgca atttgccatt gttctaatat
     3001 taacatcgtt ggctatgttg ttatttatca gtacgcaatc accaactcca tcaatataca
     3061 cggctctaag tatttttgcc gaaagtagat ttcttagaac tgtttcataa cttaaatgtt
     3121 tagcttgttt tataggagat ccagacacaa tcccaaaatc tttcaccttc aaataaccgc
     3181 cattatttat tacggcaagt atcgcgtgtg agtaagttga gtttgcttcg tacatgcact
     3241 tttcgagagc tcgccaaaat ttgaaactgc caaaatcatc ttttagataa atgaatctcc
     3301 tgttatggct gaatttcaaa aatggcagct tacctatgtc cgtgcttcgc gagattattt
     3361 tacgtatcgc ttcaggggac attgagggat attgccactg aattctctct gcaagatccg
     3421 aagagatgca tggcccgctc atttcaagca cctgtctaac aacacttttt ttcatatcct
     3481 caccttattt ctgtcacact acgctattta taatattaca ctacgtgtaa tagggcgcag
     3541 tcttttaaaa aaaagtgact ataaaaaata attaaaaatc agatggttaa ttacttactt
     3601 taaattgagc acaaagaaat atcgtcttta taattattta atccttttaa atcataaaga
     3661 tagtattgtg acattttttt atcgaactat cagctactcc atttaccata acatccgttg
     3721 cccgcaccat ctcagacgcc ctcagagcat ttctgcgccc tcctgcctat ttccggcatc
     3781 tttccctgtc catatcgtga aaaaacgcgc ctgatgattt cttcgcgtct gcatggctat
     3841 gcatacgaac gcatggacgt cattttagcg gctaaaatcc ggcgagcgcc ctgaaagcca
     3901 ccacgaaccc caccgataac ggtgaaaggg tgcgcagttt actgtgcgac cgtgaggcgt
     3961 tggccaggcc gtcaggcatg gcaggattta ttgctaaggg ggtcggattt aacctggatt
     4021 aatcagcaca cagtgatgaa cgggattcgg aaggggcacc cttgcggcgc ggcgatgtat
     4081 acatcgctaa cgtgccttgt ttatggagcg caaaaagaga gtggtagcag tccgatagca
     4141 aaaaagtagc aaaaagatag caaaaggaga gcaaccgaaa ggctcaaagg cccctgaaat
     4201 agcaaaaaga tagcaaaaaa atagcaaaaa agtagcaaac atacggtgtc gggcggaacc
     4261 tgaccaggag tcattggcgt gccggcggta ctccaaaaat acatcttgtc ccgctgtcgt
     4321 gtagccacaa aacatttcct gtccgctgct ttaacctttg taatccagga acgtcaggtg
     4381 acgtcacttt gcggcgttcg ccctatcctg catcgtatta aaaaatgcag ctatggcgcg
     4441 tacggtgcca aagagaagcc cgcagatatt ccgcttcctc gctcactgac tcgctccgct
     4501 cggtcgttcg gctgcggcga gcggagggaa cagagacatt aagccatagg caatgagaga
     4561 gaatggagaa gcaacaagaa aggccgcggc gttgccggtt ttccataggc tccgcccccc
     4621 tgacaagcat cacagaatct gacgctcaaa tcagtggtgg cgaaccccga caggactata
     4681 aagatcccag gcgtttcccc tggtagctcc ctcgtgcgct ctcctgttcc tgcctttcgg
     4741 tttaccggtg tcactccgct gttatggccg cgtttatctc attccacgcc tgacactcag
     4801 ttccgggaag gcag
//
