LOCUS       NZ_CP148415             2089 bp    DNA     circular CON 05-APR-2024
DEFINITION  Escherichia coli strain Z1323CEC0017 plasmid pZ1323CEC0017-7,
            complete sequence.
ACCESSION   NZ_CP148415
VERSION     NZ_CP148415.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40441584
            Assembly: GCF_037561805.1
KEYWORDS    RefSeq.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 2089)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Complete genome sequence of Escherichia coli isolated from humans,
            companion animals, industrial animals and wild animals
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2089)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-MAR-2024) Division of biotechnology, Jeonbuk National
            University, kobongro, Iksan 54596, South Korea
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.4.9
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 106X
            Sequencing Technology :: Illumina NovaSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037561805.1-RS_2024_04_05
            Annotation Date                   :: 04/05/2024 20:14:49
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,463
            CDSs (total)                      :: 5,336
            Genes (coding)                    :: 4,993
            CDSs (with protein)               :: 4,993
            Genes (RNA)                       :: 127
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 94
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 112 of 343
            Pseudo Genes (incomplete)         :: 243 of 343
            Pseudo Genes (internal stop)      :: 51 of 343
            Pseudo Genes (multiple problems)  :: 59 of 343
            Pseudo Genes (short protein)      :: 4 of 343
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP148415.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2089
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /strain="Z1323CEC0017"
                     /host="Chicken"
                     /db_xref="taxon:562"
                     /plasmid="pZ1323CEC0017-7"
                     /geo_loc_name="South Korea"
                     /collection_date="2023-04-19"
     gene            join(1129..2089,1..5)
                     /locus_tag="WHU09_RS27310"
                     /old_locus_tag="WHU09_27310"
     CDS             join(1129..2089,1..5)
                     /locus_tag="WHU09_RS27310"
                     /old_locus_tag="WHU09_27310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012421200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_001287824.1"
                     /translation="MSEDKFLSDYSPRDAVWDTQRTLTDSVGGIYQTAAEFERYALRMA
                     SCSGLLRFGWSTIMETGETRLRLRSAQFCRVRHCPVCQWRRTLMWQARFYQALPKIVVD
                     YPSSRWLFLTLTVRNCEIGELGTVLTAMNAAFKRMEKRKELSPVQGWIRATEVTRGKDG
                     SAHPHFHCLLMVQPSWFKGKNYVKHERWVELWRDCLRVNYEPNIDIRAVKTKTGEVVAN
                     VAEQLQSAVAETLKYSVKPEDMANDPEWFLELTRQLHKRRFISTGGALKNVLQLDRETN
                     EDLVIADDVGDGTDDGKRTAFVWDSGKRRYKRAPEKDKSD"
                     /name="protein rep"
     gene            9..275
                     /locus_tag="WHU09_RS27315"
                     /old_locus_tag="WHU09_27315"
     CDS             9..275
                     /locus_tag="WHU09_RS27315"
                     /old_locus_tag="WHU09_27315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001024536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001024536.1"
                     /translation="MNINIEYLNGNKTIGLFFLRSEAVIPDRFKNLILLIDGLSFGTFG
                     FHPHEGFEDELILYIQKTNERVKTLFVKIDLNGIKFGFLRTHS"
                     /name="hypothetical protein"
     Typing          1523..1754
                     /name="Col(BS512)"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.05e-118"
ORIGIN
        1 attaacgtat gaatattaat attgaatacc tgaatggaaa taagactatt ggtttatttt
       61 ttttaagaag tgaagcggtg attcctgaca ggtttaaaaa ccttattttg cttattgatg
      121 gattaagttt tggcacattt ggttttcatc cgcacgaagg ttttgaggat gaattaattt
      181 tatatattca gaaaacaaac gagagggtaa aaactctttt tgtgaaaata gatttaaacg
      241 gtatcaagtt tggattttta agaacgcatt cttagttctg gaaaagagcc agcggcaggc
      301 tgaggtgata ggtacgagat tgcatgcaat ctctagtgct ctgtctatcc tgcattatcc
      361 tcagcattat cctcagcctt gccaactcga caccaatgca ggatagacaa tccgatgtca
      421 aatgttaaca ctctgcgagt ggtacatttt ccccggatta tcgtcctgag cctgccgctg
      481 gctctctttc taccgcctcg ctttgctcgt tgctcaacgc ctcacagaca cggattaaaa
      541 tccgcatccg ttcaccgttt tttaaagtcc gttaaaagca tgatgccatc tccgagagtt
      601 aatctcgtca aatgctaaat cgtgggggtc ccctttgggg ttccgattta gtgattgacg
      661 acaccaccga ttaaaaaact tatgcggggt ggatggtttc acgaagtgag gccatccacc
      721 tgtaagacag ggttttgttt ttattccctg ttttggtgat cgggtgtgtg gaaaaggttg
      781 gggtaagccg ttcgggggtg cttgttttgg gggtttaaaa ttgtggttat tttttgcgca
      841 attctcgcgc gtgatccttg tatttatact taagggataa atggcggata tgaaatagtg
      901 gtttagccca gtaatgacga ggctttgagt gggttttgac aggtcaaaga aaatggagca
      961 gaattgaggc gtttttaatc ggcgttgggg agtgcgtcaa cactccccaa catttcgaat
     1021 gtgtcacctc agcggcaaac tctggtgaca tgtactggct cgcaatgcac aggtacgtga
     1081 tgaatatacc acatcaaatc acagcctgcc cagatcggag caggcttaat gtcagaagat
     1141 aaattccttt cggactacag cccccgtgat gcagtttggg atacccagcg cacgcttacc
     1201 gattctgtcg ggggtatcta ccagactgct gctgaattcg agcgctatgc actccgtatg
     1261 gcctcctgta gcggtttgtt acgttttggt tggtctacca tcatggaaac cggagaaacg
     1321 cgcctacggc ttcgtagtgc gcaattttgc cgtgtccgtc attgccctgt ctgccagtgg
     1381 agaagaaccc tcatgtggca agcccgtttt tatcaggctc taccgaaaat cgttgtggat
     1441 tacccgtctt cccgatggtt gtttctgacg ttaactgtca ggaactgcga gataggtgaa
     1501 cttggaacag tccttacagc aatgaatgcg gcgtttaagc gaatggaaaa gcgaaaggag
     1561 ctatcacctg ttcaggggtg gatcagggct acggaggtga cgcgaggtaa ggatggcagc
     1621 gcacatccgc attttcactg tctgctgatg gtgcaacctt cttggtttaa agggaagaac
     1681 tacgttaagc acgaacgttg ggtagaactc tggcgcgatt gcttgcgggt gaactatgag
     1741 ccgaatatcg atattcgggc agtaaaaact aagacaggtg aggttgtggc caacgttgcc
     1801 gagcaactgc aaagcgcggt tgctgaaacg ctgaaatact ccgttaaacc ggaagatatg
     1861 gcaaacgatc ctgagtggtt tcttgagctg acgcggcagc ttcacaagcg ccgttttatc
     1921 tcgaccggtg gggcgctaaa aaacgtcctc cagttggatc gagaaaccaa tgaggatctt
     1981 gtcattgccg acgatgtagg ggatggcact gatgacggga agcggacggc gtttgtctgg
     2041 gattcaggta aacggcgtta caaacgtgcc cctgagaagg ataaatcgg
//
