LOCUS       NZ_CP148414             2415 bp    DNA     circular CON 05-APR-2024
DEFINITION  Escherichia coli strain Z1323CEC0017 plasmid pZ1323CEC0017-6,
            complete sequence.
ACCESSION   NZ_CP148414
VERSION     NZ_CP148414.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40441584
            Assembly: GCF_037561805.1
KEYWORDS    RefSeq.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 2415)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Complete genome sequence of Escherichia coli isolated from humans,
            companion animals, industrial animals and wild animals
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2415)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-MAR-2024) Division of biotechnology, Jeonbuk National
            University, kobongro, Iksan 54596, South Korea
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.4.9
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 106X
            Sequencing Technology :: Illumina NovaSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037561805.1-RS_2024_04_05
            Annotation Date                   :: 04/05/2024 20:14:49
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,463
            CDSs (total)                      :: 5,336
            Genes (coding)                    :: 4,993
            CDSs (with protein)               :: 4,993
            Genes (RNA)                       :: 127
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 94
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 112 of 343
            Pseudo Genes (incomplete)         :: 243 of 343
            Pseudo Genes (internal stop)      :: 51 of 343
            Pseudo Genes (multiple problems)  :: 59 of 343
            Pseudo Genes (short protein)      :: 4 of 343
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP148414.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2415
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /strain="Z1323CEC0017"
                     /host="Chicken"
                     /db_xref="taxon:562"
                     /plasmid="pZ1323CEC0017-6"
                     /geo_loc_name="South Korea"
                     /collection_date="2023-04-19"
     gene            24..512
                     /locus_tag="WHU09_RS27280"
                     /old_locus_tag="WHU09_27280"
     CDS             24..512
                     /locus_tag="WHU09_RS27280"
                     /old_locus_tag="WHU09_27280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001376655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="WP_001376655.1"
                     /translation="MPVGVPVPWPSATPPTGWLKCNGAAFSAEEYPELAKAYPTNKLPD
                     LRGEFIRGWDDGRGVDAGRTILSAQGDAIRNIYGEFKTVNTENYSIWESVGSFKGAVVP
                     LTPSTNNSYFSLVRSMVTERTDGAVYPKVIGLDASKIVPTANENRPRNIAFNYIVRAA"
                     /name="phage tail protein"
     gene            541..>633
                     /locus_tag="WHU09_RS27285"
                     /old_locus_tag="WHU09_27285"
                     /pseudo=""
     CDS             541..>633
                     /locus_tag="WHU09_RS27285"
                     /old_locus_tag="WHU09_27285"
                     /inference="COORDINATES: protein motif:HMM:NF019126.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /name="phage tail protein"
     gene            736..1026
                     /locus_tag="WHU09_RS27290"
                     /old_locus_tag="WHU09_27290"
     CDS             736..1026
                     /locus_tag="WHU09_RS27290"
                     /old_locus_tag="WHU09_27290"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_226474888.1"
                     /translation="MLSGQTATFIRTALQDYYGVDLTTNVKVGIAYATADSVITVGNPA
                     NPKAGDNSDYVPASSDNSITGTQRTAEDNFTGAWISMRPRNVAFNYIVRAA"
                     /name="hypothetical protein"
     gene            1067..1534
                     /locus_tag="WHU09_RS27295"
                     /old_locus_tag="WHU09_27295"
     CDS             1067..1534
                     /locus_tag="WHU09_RS27295"
                     /old_locus_tag="WHU09_27295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000503756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="WP_001376653.1"
                     /translation="MPVPWPSATPPTGWLKCNGAAFSSEKYPNLAKVYPTLKLPDLRGE
                     FIRGWDDGRGIDSGRSILSEQGYATEDHAHGLPSKSTVATDRSINFYFDEAWATSGNTG
                     VIRWGNTSDAGLPAPNYGTFKTYKQSVANLGTAGLETRPRNVAFNYIVRAD"
                     /name="phage tail protein"
     gene            complement(1540..2151)
                     /locus_tag="WHU09_RS27300"
                     /old_locus_tag="WHU09_27300"
     CDS             complement(1540..2151)
                     /locus_tag="WHU09_RS27300"
                     /old_locus_tag="WHU09_27300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001057728.1"
                     /GO_process="GO:0098004 - virus tail fiber assembly
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber assembly protein"
                     /protein_id="WP_000367945.1"
                     /translation="MDNAILNSELIAIQAGNIIVYNYDGGNREYISASTEYLAVGVGIP
                     ANSCLDAPGSHKAGYAILRSEDLSSWEYVPDHRGETVYSIDTGNPEEITVLGDYPENTT
                     TIAPLTPYDKWDGEKWVVDTEAQHSAAVEAAETKRQSLIDTAMDSISLIQLKLRAGRKL
                     TQAETTQLNSVLDYIDELNAMDLTTAPDLNWPEKQLSTAS"
                     /name="tail fiber assembly protein"
     gene            complement(2151..>2414)
                     /locus_tag="WHU09_RS27305"
                     /old_locus_tag="WHU09_27305"
                     /pseudo=""
     CDS             complement(2151..>2414)
                     /locus_tag="WHU09_RS27305"
                     /old_locus_tag="WHU09_27305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000503763.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /name="phage tail protein"
ORIGIN
        1 ttggtttggg ggaaggctca gcattgcctg ttggcgtacc tgttccatgg ccctcagcca
       61 ctccgccaac aggctggcta aaatgcaacg gagcagcttt ttctgctgaa gaatacccag
      121 aactggcaaa ggcttatccc accaataaat taccggattt acgcggtgag tttattcgcg
      181 gctgggatga cggacgtggt gtggatgcgg ggagaacaat attatccgct caaggtgatg
      241 ccatacgtaa tatctatggt gagttcaaga ctgtaaatac tgaaaattat tcaatatggg
      301 aatcagtagg ctcgtttaag ggggcagtgg tgcctttaac tccctcaaca aacaatagtt
      361 atttttcctt agtcagaagt atggtgacag aaaggacaga cggcgctgtt tacccaaaag
      421 tgattggcct tgatgcttca aaaattgttc caactgcaaa cgaaaaccgc ccacgcaaca
      481 ttgcgtttaa ttacatcgta agggcagcat gaaaacgttg gtttagggga aggctcggcg
      541 ctgcccgttg gtgtacctgt tccatggccc ttagaaacac caccaacggg ctggctaaaa
      601 tgtaacggag cagcattttc ttctgaaaag tacccaaatc tggcaaaggt ttacccaacg
      661 ttaaaattac ctgatttacg cggtgagttt atccgtggtt gggatgattc gagagggatt
      721 gatacagggc gttcattgct aagtggtcag actgcaacat ttattcgtac agctttgcag
      781 gattattacg gtgtcgatct gactactaat gtcaaagtag gtatcgctta tgctactgct
      841 gattctgtta taactgttgg aaaccctgct aatcctaaag caggagataa tagcgattat
      901 gttccagcat catcagataa ctccataaca ggcactcaaa ggacggcaga ggataatttt
      961 accggggcat ggatatcaat gcgcccccgc aacgttgctt ttaattacat cgtaagggca
     1021 gcatgaaaac gttggtttag gggaaggctc ggcgctgccc gttggcgtgc ctgttccatg
     1081 gccctcagcc acacctccaa cggggtggct gaaatgcaat ggtgcagcat tttcttctga
     1141 aaagtaccca aatctggcaa aggtttaccc aacgttaaaa ttacctgatt tacgcggtga
     1201 gtttatccgt ggttgggatg atgggcgagg gattgactct ggtcgctcta ttttaagcga
     1261 gcaaggatat gcaacggagg atcatgctca cggattaccg tcaaaatcaa ccgtagcaac
     1321 tgaccgctca attaatttct actttgacga ggcatgggct actagtggta atacgggagt
     1381 tatcagatgg gggaacacaa gcgatgcagg attgccagcc cctaattatg gaacttttaa
     1441 aacatataaa cagtccgtag ctaatttagg tactgctggc ttagaaaccc gccctcgtaa
     1501 tgttgcattt aattatattg tgagggcgga ttaattatat caactggctg tagaaagttg
     1561 tttttcaggc cagttgagat ctggtgccgt ggttaaatcc atcgcgttca gctcgtctat
     1621 ataatctagc acggagttaa gctgcgtggt ttctgcctgc gtcaacttcc gtccagcccg
     1681 taatttcaac tgaatcagac taatggaatc catcgcagta tcaatcaatg actgacgttt
     1741 tgtttctgct gcctctacag ctgcactatg ttgagcctca gtatcaacca cccatttctc
     1801 tccatcccat ttgtcgtatg gtgttagcgg ggcgatagtg gttgtatttt ccggatagtc
     1861 acccaacacc gtgatttctt cgggattccc agtgtcaatg ctatagacag tttcgccacg
     1921 atgatctggc acatactccc atgaacttaa atcctctgaa cggagaatcg cataacctgc
     1981 tttatgtgag cctggagcat ccaaacaaga atttgccgga ataccaacgc caacagcaag
     2041 atattcagtt gatgcagaaa tatattcccg attaccacca tcatagttat aaacgataat
     2101 gtttcctgcc tgtatggcta taagttcgct atttaatatc gcattatcca ttatgctgct
     2161 ctcacaatat aattgaaggc aatgttacgt gggcgggttt cattcccccc agataactcc
     2221 gttctgtatt gactggtaaa tttaccatta atcgctcctt cttggacggc gttatctgtc
     2281 gacaacagac tatccccccc tctgtcattt ggcaccaata ccgtgttatc ccacgcgtcc
     2341 catgaccgaa tattatgata atgacttcct gttaaccacc cctgtatgct taagatgacc
     2401 cttcccgcat ccaca
//
