LOCUS       NZ_CP148412             4585 bp    DNA     circular CON 05-APR-2024
DEFINITION  Escherichia coli strain Z1323CEC0017 plasmid pZ1323CEC0017-4,
            complete sequence.
ACCESSION   NZ_CP148412
VERSION     NZ_CP148412.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40441584
            Assembly: GCF_037561805.1
KEYWORDS    RefSeq.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 4585)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Complete genome sequence of Escherichia coli isolated from humans,
            companion animals, industrial animals and wild animals
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4585)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-MAR-2024) Division of biotechnology, Jeonbuk National
            University, kobongro, Iksan 54596, South Korea
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.4.9
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 106X
            Sequencing Technology :: Illumina NovaSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037561805.1-RS_2024_04_05
            Annotation Date                   :: 04/05/2024 20:14:49
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,463
            CDSs (total)                      :: 5,336
            Genes (coding)                    :: 4,993
            CDSs (with protein)               :: 4,993
            Genes (RNA)                       :: 127
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 94
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 112 of 343
            Pseudo Genes (incomplete)         :: 243 of 343
            Pseudo Genes (internal stop)      :: 51 of 343
            Pseudo Genes (multiple problems)  :: 59 of 343
            Pseudo Genes (short protein)      :: 4 of 343
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP148412.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4585
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /strain="Z1323CEC0017"
                     /host="Chicken"
                     /db_xref="taxon:562"
                     /plasmid="pZ1323CEC0017-4"
                     /geo_loc_name="South Korea"
                     /collection_date="2023-04-19"
     gene            87..422
                     /locus_tag="WHU09_RS27230"
                     /old_locus_tag="WHU09_27230"
     CDS             87..422
                     /locus_tag="WHU09_RS27230"
                     /old_locus_tag="WHU09_27230"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_012512992.1"
                     /translation="MKRIVFSILLPLSFHANAYYLSCEQVGKIAVAVTTSSNEKATQND
                     TKYGDIQKNNLSKIENHAVLFCQEVRKFKVTPETADSWAEYTSLKAELDSEMKNNIKII
                     TRLSVIQ"
                     /name="hypothetical protein"
     gene            complement(474..797)
                     /locus_tag="WHU09_RS27235"
                     /old_locus_tag="WHU09_27235"
     CDS             complement(474..797)
                     /locus_tag="WHU09_RS27235"
                     /old_locus_tag="WHU09_27235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016240325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000152444.1"
                     /translation="MTIIFNSDKQTDSESAFEKWLLHHPDGFVVNLRKAANGLSGKSDK
                     HKTFIHSASCHCLSSTKGGFTNGEYQKICSSSFEKAEALAKYMTGLDEIKRCSFCFGKD
                     KEC"
                     /name="hypothetical protein"
     gene            complement(889..2424)
                     /locus_tag="WHU09_RS27240"
                     /old_locus_tag="WHU09_27240"
     CDS             complement(889..2424)
                     /locus_tag="WHU09_RS27240"
                     /old_locus_tag="WHU09_27240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001624483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobA/MobL family protein"
                     /protein_id="WP_000179379.1"
                     /translation="MASYHCTVKTGAKGAALKHADYISRSGEYKSYKSREDLEFSSSGN
                     MPSWAKKNPAELWKAADEFERKNGTAYREIEIALPRELTREQRIELVEDFVQKELGNRH
                     AYQYAIHNPPGAIDGKEQPHAHIMFCERINDGIERDPQQFFKRANSKSPERGGAKKASI
                     PQTAGERKAALVALRSRWADVQNEHLARHGHESRVDHRSLKEQGIKRTPEVHLGPVHAA
                     NLNEGQIAAIQEHRAARQQERAARNPAPERQQELEQKQKIRTVERSPELLAQYRKVMKT
                     VIQGEERLARLGDANPDALKEHKLLQNAKAKKESLSEWSRRIYEGARYLDKLGRNVVSA
                     QRELRELQEQRNALNGIRGLFRGADKREIDARILEQKSVLETAEHERNEFRNKLQQAES
                     EWDKENAAFKRTEGYKYVGDLDRYREREILAAASLENTRQKVAEEVSVARSQMLSLEPE
                     LSMSGDEKAQMRHELLAEMAQERQQQEEYARRIQQSLARGMLNSKERDQGIER"
                     /name="MobA/MobL family protein"
     gene            2596..3042
                     /locus_tag="WHU09_RS27245"
                     /old_locus_tag="WHU09_27245"
     CDS             2596..3042
                     /locus_tag="WHU09_RS27245"
                     /old_locus_tag="WHU09_27245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000184721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraD"
                     /protein_id="WP_000184721.1"
                     /translation="MTNREDWLSAKIAYINGLKSPSEQQRLLVLLAEKKNRTTTDEKTL
                     SALIRAEKTAEKAAAAKARVTAIIAAERKAAARAERKARDHELYKAAGLMIVAGLVDSK
                     TGKPKFSAAELVGALAGIAELPRNHPKWQEWEKRGKELLTKDSA"
                     /name="conjugal transfer protein TraD"
     gene            complement(3236..4171)
                     /locus_tag="WHU09_RS27250"
                     /old_locus_tag="WHU09_27250"
     CDS             complement(3236..4171)
                     /locus_tag="WHU09_RS27250"
                     /old_locus_tag="WHU09_27250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011666805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_050954360.1"
                     /translation="MSAALQYFEENLPRRPYHTDDLAFGLRISGKGRALLARYIQQNQP
                     HAQFWLVFDVDREGAAIDWSDRNAPAPNITVKNPVNGHAHLLYALNIAVRTAPDASVKA
                     LKYAAAVERSLCEKLCADVNYSGLICKNPFHLEWQVMEWREEAYTLDELADYLDLSASA
                     RRSIDKHYGMGRNCHLFEMTRKWAYRAIRQGWPAFSQWLDAVIQRVEMYNASLPVPLSP
                     PECRAIGKSIAKYTHRNFTPETFAQYVANTHTPEIQAKRGRKGGIAKGEAYADKRFMAL
                     CMLENGYSQKAIAAMLEVSTRTIRNWKSGK"
                     /name="replication initiation protein"
     Typing          complement(3237..4171)
                     /name="Col156"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="99.893"
                     /coverage="100.0"
                     /evalue="0.0"
     Typing          complement(893..2424)
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 cgttagaaaa atactaagaa ttgcaaaata cgtatttgta aatgtagtat ctacatgttt
       61 tttttattaa aaacgagaca cctataatga aaagaatagt attctcaata ttattgccat
      121 tgtcatttca tgccaacgcg tactatttaa gttgcgagca agttggaaaa atagcagtag
      181 cggtaaccac ctcatcaaat gaaaaggcaa ctcaaaatga cacaaaatat ggagatattc
      241 aaaaaaacaa tttatcaaaa atagaaaatc atgctgtttt attttgccaa gaagttagaa
      301 aatttaaagt cactccagaa actgccgata gctgggcaga atatacatcc cttaaagctg
      361 aattagattc agaaatgaaa aacaacataa aaattataac acgactatct gtaatccaat
      421 aaataaaaag atcgcgataa aaatcgcgat cttaccaata ataaagtagc atattagcac
      481 tctttatctt taccaaagca gaagctgcaa cgttttatct catctagccc agtcatatat
      541 ttagctaacg cctctgcttt ctcaaaagaa gatgagcata ttttctgata ttctccatta
      601 gtaaatccac ctttcgtaga agagagacaa tgacaactag cactgtgaat aaaagtttta
      661 tgtttatcac ttttacccga caaaccatta gcagcttttc tcaaattaac aacaaagcca
      721 tcaggatggt gaagcaacca tttctcgaaa gctgactcgc tatcagtttg tttatcgctg
      781 ttaaagataa tagtcattta atttatcttc catcacaatc aatttcatct actcgttaac
      841 tatttttagt taattcagaa aaatttcttt accagagtaa atacaacatt atcgttcaat
      901 accctgatca cgctccttac tatttaacat tcctctagcc aaagattgct gtatacgccg
      961 tgcgtattct tcttgttgct gcctttcctg tgccatttct gccagtaact catgtcgcat
     1021 ttgagctttt tcatctccag acatactgag ttcaggctcc agagataaca tctggctacg
     1081 ggcaacggat acttcttcag caaccttttg cctggtattc tctaaagatg ccgcggccag
     1141 aatctcacgt tctctgtacc tgtccagatc cccaacgtac ttatatccct cggtacgctt
     1201 aaaagcagcg ttttctttgt cccactcgga ttcggcttgc tgtagcttgt tcctgaattc
     1261 attcctttca tgttcagcgg tttccagcac acttttttgc tccagaatac gcgcatcaat
     1321 ctcccttttg tcagcccccc gaaacaggcc acgaatccca ttcaaagcat tgcgttgttc
     1381 ctgtagctcc cgcagctccc tttgtgcgga aacaacatta cgccccagtt tgtctaaata
     1441 ccgtgcccct tcatatattc gcctgctcca ttcggaaaga gattcttttt tagctttcgc
     1501 attctgaagc agcttatgtt ctttgagcgc atcggggttg gcatccccta aacgagcaag
     1561 cctttcctct ccctgaatga ccgttttcat aaccttgcgg tactgagcca gtaactccgg
     1621 tgaacgctca actgtcctga ttttttgctt ttgctccagt tcctgttggc gctctggcgc
     1681 tgggttgcgt gctgcgcgtt cttgctgacg cgccgccctg tgctcctgaa ttgccgcgat
     1741 ctgcccctcg ttcagattgg cggcgtgaac agggccaaga tgaacttccg gcgtgcgctt
     1801 gatgccctgt tctttcagcg aacgatgatc tacgcgcgac tcgtgaccgt gtcgcgcaag
     1861 gtgctcattc tgcacatcag cccagcggga acgtagcgca acaagggcgg cttttcgctc
     1921 tccggcggtc tggggaatac tcgccttttt tgcgcctccc cgctccggtg atttgctgtt
     1981 ggcgcgttta aaaaattgct gcggatcgcg ttcaatacca tcattaatcc gctcgcaaaa
     2041 catgatatgc gcgtgtggct gttcctttcc gtcgattgca cctggcggat tgtggatcgc
     2101 gtactggtag gcatggcgat tgccaagttc cttttgcacg aaatcttcaa caagttctat
     2161 ccgttgttcg cgtgtcagtt cacgcggtaa tgcgatctca atttcacggt atgccgtccc
     2221 gttttttcgt tcaaattcat ctgcggcttt ccacagttct gcgggatttt tcttcgccca
     2281 tgatggcatg ttaccggatg acgaaaactc cagatcctcc cgcgatttgt agctcttata
     2341 ttcgccggat ctggaaatgt aatcagcatg ttttaaggct gcgccttttg ctccggtttt
     2401 aacggtacaa tggtagcttg ccatctgcct tttagccctc cgcaggagcg cacagtttct
     2461 tgatgaaatc gagaaactac taagtgcgca tccctgaata aatcagggat gattttacgt
     2521 tctcacacgc aggcagacaa ggtgatatta tgcacaataa caactcacat taacggcaaa
     2581 agtgcagagg taaggatgac aaatcgtgaa gactggttaa gtgcaaaaat tgcctacatc
     2641 aacggactga aatcaccgtc agagcagcag agattacttg tgttactggc agagaaaaaa
     2701 aaccgaacaa cgacggatga aaaaacgttg tccgcactga tacgagcaga aaaaaccgca
     2761 gagaaagcag ccgcagcaaa agccagagta acggcaatca tagcggcaga acggaaggca
     2821 gccgcaaggg cggaacgaaa ggcacgagat catgaactct acaaggccgc aggcctcatg
     2881 attgtggcag gactggtgga cagcaaaacc ggaaaaccaa agtttagtgc tgccgaactg
     2941 gtaggcgcac tcgcaggaat cgcagagcta ccgcgcaacc atccaaaatg gcaggaatgg
     3001 gaaaaacgcg ggaaagagct actcaccaaa gacagtgcgt aagagcctcc gttcacgttc
     3061 cggttccctg gtgcttcctc gctcattcgc tcgctacgct cggtcatgag actgtggcga
     3121 gcacgaccac ctcaatcata cggcaagccg caccattgct gggctgaaag gagaaaaccg
     3181 ccggaaagcc cgctgctcaa aaagacgccg aaaaggcgct gttatctgat ataggctatt
     3241 ttccgctttt ccaattccga atagttcgag tggaaacctc caacatcgcc gcgatagctt
     3301 tctgagaata tccattctcc agcatacata gagccatgaa acgcttgtca gcgtaggctt
     3361 cgcctttagc gatgccacct ttcctgcctc tcttggcctg tatttctggc gtgtgcgtat
     3421 tagccacata ctgtgcgaaa gtttccggcg tgaagttcct gtgcgtgtat ttcgcaatgc
     3481 tcttgccaat agcccgacat tcaggcggag aaagcggaac gggaagcgat gcgttgtaca
     3541 tttcgacacg ctgaatcacg gcatcaagcc actgtgagaa tgctggccag ccctgacgaa
     3601 tcgccctgta agcccatttg cgcgtcattt cgaacaggtg gcagtttcgc cccatcccgt
     3661 aatgtttatc gatgctacga cgcgctgagg cgctcaaatc gagataatca gccagttcat
     3721 cgagggtata ggcttcctcg cgccactcca tcacctgcca ttccaggtgg aacggatttt
     3781 tgcaaatcag tccgctgtag ttcacatcag cacaaagttt ctcacacagc gaacgttcaa
     3841 ccgctgcggc atatttcagc gccttaaccg acgcatcagg cgcggttctc acggcgatat
     3901 tgagtgcata gagcaggtga gcgtgtccgt tcacaggatt tttaacggtg atgttcggcg
     3961 cgggggcgtt ccggtcgctc cagtcaatcg ctgccccctc gcggtcaacg tcaaaaacca
     4021 gccagaactg cgcatgaggc tggttctgct ggatgtaccg cgcaagcagc gcacgccctt
     4081 tgccggagat gcgaagacca aaagcgagat catccgtgtg atagggacgg cggggtaaat
     4141 tttcttcgaa gtattgaagc gcggcgctca tgtgttacga ttccttccag gttatcgacc
     4201 gacatcgccc ctgtattttc gtgacagtct tggcggatag acacgaattt caggggcgtt
     4261 tgtttttcag tcgcttacac tacccccaac gacaaaacct gtcgagtctt cccgcaaacc
     4321 cgatccattt accataactc ctgttgtgtg caccccttaa aacgccctca gacgctttct
     4381 gacgcaaaaa actcaaaaag acaagtaaac accaggcaga accagaaaaa cgcgtcagaa
     4441 ttgtttctag gaagctgcat aactatgcac aaaagcgatt cgcgaacagt ttcgaccgtt
     4501 tagaagggcg aacgggtcaa aacggcaaac tttccccatc agaaaacgcc tcacagggag
     4561 cgaaatcttt tcgctccctg tgagg
//
