LOCUS       NZ_CP148348             1177 bp    DNA     circular CON 05-APR-2024
DEFINITION  Escherichia coli strain Z1323HEC0422 plasmid pZ1323HEC0422-10,
            complete sequence.
ACCESSION   NZ_CP148348
VERSION     NZ_CP148348.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40441600
            Assembly: GCF_037543915.1
KEYWORDS    RefSeq.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 1177)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Complete genome sequence of Escherichia coli isolated from humans,
            companion animals, industrial animals and wild animals
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1177)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-MAR-2024) Division of biotechnology, Jeonbuk National
            University, kobongro, Iksan 54596, South Korea
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.4.9
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 99X
            Sequencing Technology :: Illumina NovaSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037543915.1-RS_2024_04_05
            Annotation Date                   :: 04/05/2024 20:17:03
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,593
            CDSs (total)                      :: 5,467
            Genes (coding)                    :: 5,136
            CDSs (with protein)               :: 5,136
            Genes (RNA)                       :: 126
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 97
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 331
            CDSs (without protein)            :: 331
            Pseudo Genes (ambiguous residues) :: 0 of 331
            Pseudo Genes (frameshifted)       :: 121 of 331
            Pseudo Genes (incomplete)         :: 209 of 331
            Pseudo Genes (internal stop)      :: 62 of 331
            Pseudo Genes (multiple problems)  :: 55 of 331
            Pseudo Genes (short protein)      :: 3 of 331
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP148348.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1177
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /strain="Z1323HEC0422"
                     /host="Homo sapiens"
                     /db_xref="taxon:562"
                     /plasmid="pZ1323HEC0422-10"
                     /geo_loc_name="South Korea"
                     /collection_date="2023-05-18"
     gene            271..597
                     /locus_tag="WHU23_RS27965"
                     /old_locus_tag="WHU23_27970"
     CDS             271..597
                     /locus_tag="WHU23_RS27965"
                     /old_locus_tag="WHU23_27970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000776994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_159126608.1"
                     /translation="MKLSAPVAELSRVRSPSSQLPQPQTVFANTQASAKKGFFSGVWGG
                     CEAEKFLKNTEGSCKLNELVSVAVNNRLHRNIEEVENLNEPEEARLMAGFFRSTLPDER
                     SQVK"
                     /name="hypothetical protein"
ORIGIN
        1 tggtgaaagg ttggagggaa cggcaacaac tcacccctcc cagtgaaggg acgggtagtt
       61 tgccgctctc gatatgccgg acggagccaa ggccatcgat cacggggcgc gtcagtggaa
      121 gaacccgcgc ctgcgtgacg tatgcgtctt cgccgcacca tctcacccgt cacgccacca
      181 cataccggga actgccgcca aggtctaact caaccaatct agccgcgcta catacggttt
      241 ttgtggcaac tcatcaggtg tccgctgtcg atgaaactct ctgcgccggt agcggaactc
      301 tcacgcgtgc ggtcgccgtc gtcacagctc ccccaaccgc aaacggtctt tgcaaacacg
      361 caagcatctg caaaaaaagg atttttttcg ggtgtctggg gaggctgtga ggcggaaaaa
      421 ttcttgaaga atacagaagg ttcatgcaaa ctgaatgaac tggtttctgt cgccgtgaac
      481 aacagactcc acaggaacat tgaggaggtc gaaaacctca atgaacccga agaagctcgc
      541 ctaatggcgg gcttttttcg ttctacgctc cccgacgaaa gatcgcaagt gaaataacga
      601 gatttttcac gtctttacgc tcaaaaagca aaaaaaccat gttttcccct ggctgaatcc
      661 ccaaaaacgc gtcagaaagc ttctgagtgc gttgcatagc tatgcacgga acagattcac
      721 gatcgatttc gcgcgttccg tgcatcaaac aggtcaaaat tgcacgtttc cctctctgga
      781 aacggtgaac ggggcgcgaa attttttcgc gtgccgtgag gcgttgagca agcggaagcg
      841 cgccagtcat ctcaacgccg accgacgcgt tggctgccgt tcagccctcc gcaggagcgc
      901 actgtttctc gacgaaggag agaaacatat aagtgcgctt cctgctaatt ttacgaattt
      961 gagagatgaa accgcaaaaa catgaggcaa aagagcgtat gtgctcaaac cccgctaccg
     1021 gttctcttcc gcttcctcgt cgattcgctc gctccgctcg gtcatcgact tgcggcgagc
     1081 ggtgggatca cactcgttgt gatgcagatc cgtttttttt ttttgcactg gagttatcag
     1141 gagttgcggt gcacatggga tcgtgcgata tgccgga
//
