LOCUS       NZ_CP148338             2208 bp    DNA     circular CON 15-APR-2024
DEFINITION  Escherichia coli strain Z1323HEC0423 plasmid pZ1323HEC0423-5,
            complete sequence.
ACCESSION   NZ_CP148338
VERSION     NZ_CP148338.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40441601
KEYWORDS    RefSeq.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 2208)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Complete genome sequence of Escherichia coli isolated from humans,
            companion animals, industrial animals and wild animals
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2208)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-MAR-2024) Division of biotechnology, Jeonbuk National
            University, kobongro, Iksan 54596, South Korea
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method              :: Unicycler v. v0.4.9
            Genome Representation        :: Full
            Expected Final Version       :: Yes
            Genome Coverage              :: 127X
            Sequencing Technology :: Illumina NovaSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI RefSeq
            Annotation Name              :: GCF_038096625.1-RS_2024_04_15
            Annotation Date              :: 04/15/2024 11:23:58
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision :: 6.7
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                :: 2
            CDSs (total)                 :: 2
            Genes (coding)               :: 2
            CDSs (with protein)          :: 2
            Genes (RNA)                  :: 0
            tRNAs                        :: 0
            ncRNAs                       :: 0
            Pseudo Genes (total)         :: 0
            CDSs (without protein)       :: 0
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP148338.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2208
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /strain="Z1323HEC0423"
                     /host="Homo sapiens"
                     /db_xref="taxon:562"
                     /plasmid="pZ1323HEC0423-5"
                     /geo_loc_name="South Korea"
                     /collection_date="2023-05-20"
     gene            complement(join(1816..2208,1..42))
                     /locus_tag="WHU62_RS00005"
                     /old_locus_tag="WHU62_25310"
     CDS             complement(join(1816..2208,1..42))
                     /locus_tag="WHU62_RS00005"
                     /old_locus_tag="WHU62_25310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000031238.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_004193480.1"
                     /translation="MSNRITQIDTATGEEVGSFVAVIRPKQKSAFERHFTMNQDALKIL
                     AKTLTGEQFKVLMMLLADLDYENYIQIAQADIADALGMQKTNVSRSVKALIDLSVILQG
                     PKVGRSYSYRLNPQFGWKGTVSNHKKALKNGLSVIQGGRT"
                     /name="helix-turn-helix domain-containing protein"
     gene            804..1754
                     /gene="mobV"
                     /locus_tag="WHU62_RS00010"
                     /old_locus_tag="WHU62_25305"
     CDS             804..1754
                     /gene="mobV"
                     /locus_tag="WHU62_RS00010"
                     /old_locus_tag="WHU62_25305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000024818.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006310 - DNA recombination [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobV family relaxase"
                     /protein_id="WP_341484586.1"
                     /translation="MRCKKLTGMGSVASALQHCYRERETPNADAERTPENYCSVSQSAD
                     EAMGKLRELLPEKRRKDAVLAVEYVMTASPEWWNEATPRQQAEFFARSEQWLEKKYGKD
                     RVVAAVVHRDEATPHLSAFVVPLTQDGRLSAKEFIGGRSKMREDQSTYAESVKKLGLER
                     GIEGSRATHQTVQHYYESINRGTRSQVSISPEALEPRVLRKGIFTKDVEDQAAIAKRLS
                     HAVNDGFAGTIAMASQSAQNAKRARELQKTMDAQQKRLQSVTEPFKGLSREQMTEILMM
                     AQRFKQQNQEKEKQQRIEREKQRQTRSRGMGGMER"
                     /name="mobV"
     Typing          739..1751
                     /name="MOBV"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="96.45"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 ttcccctgta gcagtgtcta tctgagtaat tcggttactc atttaagagg ctctcccaaa
       61 aaaatagtta tcaataatga taacaacgtt atcaataatg ataactatcg tcaagcgaga
      121 gccgcgcccc acaagggctg agagaaggct ctcttctgta tcttatagcg agcgtagcga
      181 gtgccatacc taaagtacga ttagtacttg agatgagtac gattagtact tgaggtgagt
      241 acgattagta cttgaggtga gtacgattct tctctctagc ccttggtgtg cgcgggttcc
      301 cgtatctata tctatatatt aaggggggaa ataaaggctg aaaaacgcca tttttaaaca
      361 tcgaaaaacg agcttttttg agtctggagc gtacggattt ctatgtccgg ggagtggaaa
      421 ttccgcttcc tcgatcggac agactcgcgg cgttgccgct ccctaatccg atctgcggcg
      481 agcggttcct gctctttcaa aagcgatatc cagatcctga tttcgtcaag ggcgagcgga
      541 gcgagtgcat ttcacccttg acgacgcaca aataaaacag gcttggcagt ggtgggaggt
      601 gacgcggagc gacgccttcc acctgccaga ccgccgttga ttttgacctt ctggcagctt
      661 gctgcccgaa cgattttgcg aagcaaagtc tagtgagtac actatcatcc tgatagtggc
      721 ccgccggagg catcgcaatg cgatcccccg actggccgga tggacgccgg aacgaggggg
      781 taagcatggc gaattacgcg ataatgcgct gcaaaaagct gacgggaatg ggcagtgtgg
      841 ccagcgcgtt gcagcactgc tacagggagc gtgagacgcc gaatgctgac gctgaacgga
      901 caccagaaaa ctactgctct gtgtctcagt cggcagatga ggcgatggga aagctgcggg
      961 agctgttgcc ggaaaaacgc cgtaaagatg cggtactggc tgttgaatac gttatgacgg
     1021 caagccctga gtggtggaac gaggccacac cgcggcagca ggcggagttt ttcgcccgct
     1081 ctgagcaatg gctggagaag aaatacggga aggatcgtgt tgtggcggcg gtggttcacc
     1141 gggacgaggc caccccgcac ctgtctgcgt tcgtggtgcc attgacgcag gatggacggc
     1201 tgtccgcgaa agagtttatt ggcgggcggt caaagatgcg tgaagatcag agcacctacg
     1261 ctgaatcagt aaaaaaactg ggtcttgagc gcggcatcga gggaagccgc gccacgcatc
     1321 agacagttca gcactactac gaatcgataa accgtggcac ccgtagccag gtatcgatct
     1381 cgccggaggc gctggagccg cgtgtattgc ggaagggcat tttcaccaaa gacgtggaag
     1441 atcaggcagc catagccaaa cgtctaagcc acgcagtgaa cgatggcttt gcaggaacca
     1501 tcgctatggc ctctcagagc gcccagaacg caaaaagagc gcgtgagcta cagaagacta
     1561 tggatgcgca gcagaaacgc ctacagagcg ttacagagcc ttttaagggg ctttccagag
     1621 agcagatgac cgaaatcctg atgatggctc agcggtttaa gcagcaaaac caggaaaagg
     1681 aaaaacagca gcgtattgaa cgtgaaaaac agcgacagac gcgatcgcgt ggcatgggtg
     1741 gtatggagcg ttagttttga tgcgatgcag gatagggcta acgccgcaaa gtgacgtcat
     1801 ttgcggcatt ccagattagg ttctgccgcc ctgtataacg ctgaggccgt tttttagtgc
     1861 tttcttgtgg ttgctgacag tacctttcca gccaaactga gggttcagac ggtaactgta
     1921 actgcgccct acttttgggc cttgaagaat cacggatagg tcaattagcg ccttaaccga
     1981 acggcttaca ttggttttct gcatacctaa agcgtcggca atatcggctt gggcaatttg
     2041 gatgtaattt tcataatcga gatcagctaa cagcatcatc aagactttga attgctcccc
     2101 tgtgagggtc ttagcaagga tctttaaagc gtcttggttc atagtgaaat gcctctcaaa
     2161 agctgacttc tgtttgggtc ggataactgc gacaaaacta cctacctc
//
