LOCUS       NZ_CP148280             4615 bp    DNA     circular CON 05-APR-2024
DEFINITION  Escherichia coli strain Z1323PEC0011 plasmid pZ1323PEC0011-4,
            complete sequence.
ACCESSION   NZ_CP148280
VERSION     NZ_CP148280.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40441618
            Assembly: GCF_037528475.1
KEYWORDS    RefSeq.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 4615)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Complete genome sequence of Escherichia coli isolated from humans,
            companion animals, industrial animals and wild animals
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4615)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-MAR-2024) Division of biotechnology, Jeonbuk National
            University, kobongro, Iksan 54596, South Korea
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.4.9
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 118X
            Sequencing Technology :: Illumina NovaSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037528475.1-RS_2024_04_05
            Annotation Date                   :: 04/05/2024 20:10:28
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,881
            CDSs (total)                      :: 4,763
            Genes (coding)                    :: 4,455
            CDSs (with protein)               :: 4,455
            Genes (RNA)                       :: 118
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 308
            CDSs (without protein)            :: 308
            Pseudo Genes (ambiguous residues) :: 0 of 308
            Pseudo Genes (frameshifted)       :: 107 of 308
            Pseudo Genes (incomplete)         :: 218 of 308
            Pseudo Genes (internal stop)      :: 46 of 308
            Pseudo Genes (multiple problems)  :: 55 of 308
            Pseudo Genes (short protein)      :: 4 of 308
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP148280.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4615
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /strain="Z1323PEC0011"
                     /host="Dog"
                     /db_xref="taxon:562"
                     /plasmid="pZ1323PEC0011-4"
                     /geo_loc_name="South Korea"
                     /collection_date="2023-02-16"
     gene            join(4574..4615,1..345)
                     /locus_tag="WHU34_RS24370"
                     /old_locus_tag="WHU34_24370"
     CDS             join(4574..4615,1..345)
                     /locus_tag="WHU34_RS24370"
                     /old_locus_tag="WHU34_24370"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001598756.1"
                     /translation="MRAFNYSPRYANAVRVLNRLLDKEFLSAEEIRLYDDQGRVIEYIN
                     NRLLVPVLSMKISRDGEYVRVWYLSQEAIDDYYNRREYQFSQQRHAVAVARQHRKASTA
                     ARLLLSLGETVPESIRMILAANDD"
                     /name="hypothetical protein"
     gene            705..887
                     /locus_tag="WHU34_RS24375"
                     /old_locus_tag="WHU34_24375"
     CDS             705..887
                     /locus_tag="WHU34_RS24375"
                     /old_locus_tag="WHU34_24375"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_174785313.1"
                     /translation="MSKELSLNRISNRVSSSLKEGIVHERVVHGNVYDLELELLRRKRE
                     EAIKRIIEDSKSLKW"
                     /name="hypothetical protein"
     gene            942..2525
                     /locus_tag="WHU34_RS24380"
                     /old_locus_tag="WHU34_24380"
     CDS             942..2525
                     /locus_tag="WHU34_RS24380"
                     /old_locus_tag="WHU34_24380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000951932.1"
                     /GO_function="GO:0019239 - deaminase activity [Evidence
                     IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anti-phage dCTP deaminase"
                     /protein_id="WP_223351761.1"
                     /translation="MSSANEDISGRDSIDQITSRQSMDIIIGFCGAVGSGIKSIVDVTE
                     EELEDLGYEVYRIRVSDLMQKLFSEWCGDTSTPFKRYNSLQDFGDSLRCKYYPHILAEA
                     VIHEIKIEKNLEGKSKELKKRAFLIDQLKHQDEIELLRMVYQHNFYLLGVIRSETERKR
                     NLRDEGLSKSEVDIIIHHDRKSEHPYGQQTAKAILDADYFVKNNQGQRAHLKSKVKRFL
                     GLIHGLNGLTPNAHEKGMYAAHSASLQSACLSRQVGAAILDIKGNLIAVGRNDVPKFNG
                     GLYSADDGVNDHRCVYKGGKCYNEVRKLKIKDKIQQILLSDKVKELSVQLTQEQAEKVA
                     GIIYEGTPVSSIIEYSRSIHAEMDAITSLARLGNGGFEDKVLYTTTFPCHNCARHIVAV
                     GINKVVYIEPYEKSLALELHDDAITEVNESGKVLFESFEGVSPRRYHKFFFSTDERKDS
                     KGNAEKYSTKYKNHIDIQFIDSYVDFENRVADIFISNTKTDAEAQVAVPSGTPVNPLLP
                     PIPPTPPTSV"
                     /name="anti-phage dCTP deaminase"
     gene            complement(2730..2843)
                     /locus_tag="WHU34_RS24385"
                     /old_locus_tag="WHU34_24385"
     CDS             complement(2730..2843)
                     /locus_tag="WHU34_RS24385"
                     /old_locus_tag="WHU34_24385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001354639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_071594735.1"
                     /translation="MHEPPVQSDRCACPGNYRLESNPRRHDKAPLAAATGN"
                     /name="replication initiation protein"
     Typing          complement(2727..3116)
                     /name="rep_cluster_2373"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="96.164"
                     /coverage="91.0"
                     /evalue="0.0"
ORIGIN
        1 cgtgttttaa accgccttct cgataaagag tttctgagtg ctgaagaaat tcgcctttac
       61 gatgatcaag ggcgggtgat tgagtacatc aacaacaggc ttcttgttcc tgttttgagc
      121 atgaagatca gccgcgatgg tgagtatgtt cgtgtctggt atttgtctca agaagccatt
      181 gatgactatt acaaccgtcg tgagtatcag tttagtcagc agaggcatgc tgtcgctgtt
      241 gctcgtcagc atagaaaagc ctctacggcc gctcgtttgc ttttatcgct aggtgaaact
      301 gtcccagaaa gtatccgtat gattcttgct gctaatgatg attaggagga tattatgttt
      361 ctggggttat ttgttgtttt tgctggcttt ctctacctat tagagagctt ggggtttctt
      421 cctggaaacg ttgaatgggg agtgcctctc gccatgattt gttttgggct tcatctggtc
      481 tatgaagcag tcagggagag agtgcttaag cacgatgttt aggtcttaaa ctagactaaa
      541 aagctcgcaa tatgcgagct tttttattta tttcatagac ttgtgtagtt ttcactcttt
      601 tttgcctggt gttctaagca aaaaaaactt ctgcgcatta cgcctgtttg tggttgcctg
      661 ttataaagat aacagtaaaa tccatgcgtt tcgcaggaga aaatatgagc aaagagctat
      721 cactaaatcg tatttccaat agagtttcgt cctctttgaa agaggggata gttcatgaaa
      781 gagtggttca tggaaatgtt tatgatttgg agttggagtt attaaggcgc aaaagagaag
      841 aagctataaa aaggataatt gaagattcta aatcattaaa atggtgattg agaggcgtta
      901 tgagcacagc taggaagtta aaggaaaaaa agagcactcc aatgagtagt gccaatgaag
      961 atatttctgg tcgtgatagt atagatcaga ttacatctag gcaatccatg gatattatta
     1021 taggtttctg tggggctgtt ggttccggta ttaagtcaat tgtagatgta accgaagaag
     1081 aactggaaga tttaggatac gaagtatata ggataagagt tagcgatctt atgcagaaac
     1141 ttttttctga gtggtgtggg gatacatcta ctccattcaa aagatataat tccttgcagg
     1201 attttggtga ttccttaaga tgtaagtact acccacacat actagctgaa gctgtaattc
     1261 atgaaataaa gatagaaaaa aatctagaag gaaaatcaaa agagttaaag aaacgagctt
     1321 tccttataga tcaactaaag caccaagatg aaattgagtt gcttagaatg gtctatcaac
     1381 ataatttcta tttattaggt gttattagga gcgagactga aagaaaaaga aatcttcgag
     1441 atgagggttt aagcaaatct gaagttgata taatcatcca tcatgacagg aagtctgagc
     1501 acccttatgg ccagcaaaca gcaaaagcta tacttgatgc tgactatttt gttaaaaata
     1561 atcaaggcca gagagctcac cttaaatcta aagttaaacg ctttcttggt ctaattcatg
     1621 ggcttaatgg ccttacgcca aacgcgcatg agaagggcat gtacgcagct cattctgcct
     1681 ctttacaatc tgcatgtctt tccagacagg taggtgctgc tattttagat ataaaaggaa
     1741 atttaattgc cgttgggcgc aatgatgttc ctaaatttaa cggtggcctt tatagtgctg
     1801 atgatggagt gaatgatcat cgctgtgtct acaaaggtgg caaatgttac aatgaagtaa
     1861 gaaaattaaa aataaaagat aaaatacagc aaatattgct ttctgataag gttaaggagt
     1921 tgtctgttca gttaactcaa gaacaagcag aaaaggttgc tggaataatc tacgaaggta
     1981 ctcctgtatc atcaatcatt gagtactctc gctctattca tgctgaaatg gatgctatta
     2041 catctcttgc tagactcggg aatggtggtt ttgaagataa ggttttatat acaactacgt
     2101 tcccctgtca taattgtgcg agacatattg ttgctgttgg tatcaataaa gttgtttaca
     2161 ttgaacctta tgaaaaaagc ttagctttag agttgcacga tgatgcaata actgaagtta
     2221 acgaaagtgg taaggtttta tttgagtcct ttgaaggggt ttcaccaagg agatatcata
     2281 agttcttctt ttctacagat gaaaggaagg atagtaaagg taatgcggag aaatattcaa
     2341 cgaagtataa gaatcatatt gatatacagt ttattgatag ttatgtggat tttgaaaatc
     2401 gtgtggcgga tattttcatt agtaacacaa aaacagatgc tgaagctcaa gtagccgttc
     2461 catctgggac gccagttaat ccgcttctgc caccgattcc tccgacgcca ccaacatcgg
     2521 tatgaagatc tattgactct gatgttacac agagcttaat cttgtcttgc aaaagaaaaa
     2581 accaccgcta ccaacggtgg tttttcaagg ttctctgagc taccaactct ttgaaccgag
     2641 gtaactggct tggaggagct cagtcaccaa aacttgttct ttcagtttag ccttaacagg
     2701 cgcacaactt caagactaac tcctctaaat cagttaccag tggctgctgc cagtggcgct
     2761 ttgtcgtgcc ttctcgggtt ggactcaaga cgatagttac cggggcaggc gcagcggtcg
     2821 gactgaacgg ggggttcgtg catacagtcc agcttggagc gaactgccta cccggaactg
     2881 agtgtcaggc gtggaatgag acaaacgcgg ccataacagc ggaatgacac cggtaaaccg
     2941 aaaggcagga acaggagagc gcacgaggga gctaccaggg ggaaacgcct gggatcttta
     3001 tagtcctgtc gggtttcgcc accactgatt tgagcgtcag attctgtgat gcttgtcagg
     3061 ggggcggagc ctatggaaaa ccggcaacgc cgcggccttt cttgttgctt ctccattctc
     3121 tctcattgcc tatggcttaa tgtctctgtt ccctccgctc gccgcagccg aacgaccgag
     3181 cggagcgagt cagtgagcga ggaagcggaa tatctgcggg cttctctttg gcaccgtacg
     3241 cgccatagct gcatttttta atacgatgca ggatagggcg aacgccgcaa agtgacgtca
     3301 cctgacgttc ctggattaca aaggttaaag cagcggacag gaaatgtttt gtgcccacag
     3361 ctatgctggc ttattcacaa aacagcggga caagatgtgt ttttggagta ccgccggccc
     3421 gctaaagact cctggttagc tcccgcatgt ttgctaccat tttgctactt ttttgctatc
     3481 tccagagtct tctggtcttt cggttgctat ccttttgcta cttttttgct atcaaaatgc
     3541 tacctctccc ttcttgcaat aaatgaccaa ggcacgttag cgatgtatac atcgccgcgc
     3601 cgcaagggtg ccccttccga atcccgttca tcactgtgtg ctgattaatc caggttaaat
     3661 ccgaccccct tagcaataaa tcctgccatg cctgacggcc tggccaacgc ctcacggtcg
     3721 cacagtaaac tgcgcaccct ttcaccgtta tcggtggggt tcgtggtggc tttcagggcg
     3781 ctcgccggat tttagccgct aaaatgacgt ccatgcgttc gtgtgcatag ccatgcagac
     3841 gcgaagaaat catcaggcgc gttttttcac gatatggaca gggaaagatg ccggaaatag
     3901 gcaggaggac gcagaaatgc cctgagggag tctgagatgg tgcgggcaac ggatgttatg
     3961 gtaaatagct tccgttggta agtatgccaa tgcaagtttt tcagggtttg agactcgttt
     4021 agaacatcta aaaaaaagca catgaatgct gctataagaa gcgactgttt gatggttcat
     4081 ggtttaccat taaggtagat gaaaactcaa tacagcgcta tttagggcgc ttaaatggca
     4141 ttcttgtatt tttttaacga tgcagagtaa caggctctag ctaggttatg gtacactcga
     4201 aaagttccct tatagggaca aaacaaaagg gactttgaag ctacgcaacc gccaagaagc
     4261 tcgcttcaaa gtccctgtac cgcagctata ttgcatgggt ttggttaaga catacgtcat
     4321 gtctttgggg gcatattatg gtgaaaaacg cgttcgcgtc tacaccaata tttatacatt
     4381 tctcttcaat attgacgccg tttccagcca acttttgcta tatgggtgac aattttcgct
     4441 tttaaaacgg agatgtctcc atgattgagc atgatcctaa aaatctgcat tttgtgctgt
     4501 gcaggcatta ccattctttc tatgcacaaa cgtgccgcgt cttgcattct gcttttgtat
     4561 gcggaggtgc tcaatgagag cttttaacta ctcccctcgt tatgctaacg ccgtt
//
