LOCUS       NZ_CP148274             4073 bp    DNA     circular CON 05-APR-2024
DEFINITION  Escherichia coli strain Z1323PEC0013 plasmid pZ1323PEC0013-6,
            complete sequence.
ACCESSION   NZ_CP148274
VERSION     NZ_CP148274.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40441620
            Assembly: GCF_037526635.1
KEYWORDS    RefSeq.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 4073)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Complete genome sequence of Escherichia coli isolated from humans,
            companion animals, industrial animals and wild animals
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4073)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-MAR-2024) Division of biotechnology, Jeonbuk National
            University, kobongro, Iksan 54596, South Korea
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.4.9
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 111X
            Sequencing Technology :: Illumina NovaSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037526635.1-RS_2024_04_05
            Annotation Date                   :: 04/05/2024 20:12:17
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,957
            CDSs (total)                      :: 4,840
            Genes (coding)                    :: 4,495
            CDSs (with protein)               :: 4,495
            Genes (RNA)                       :: 117
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 345
            CDSs (without protein)            :: 345
            Pseudo Genes (ambiguous residues) :: 0 of 345
            Pseudo Genes (frameshifted)       :: 117 of 345
            Pseudo Genes (incomplete)         :: 253 of 345
            Pseudo Genes (internal stop)      :: 48 of 345
            Pseudo Genes (multiple problems)  :: 65 of 345
            Pseudo Genes (short protein)      :: 4 of 345
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP148274.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4073
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /strain="Z1323PEC0013"
                     /host="Dog"
                     /db_xref="taxon:562"
                     /plasmid="pZ1323PEC0013-6"
                     /geo_loc_name="South Korea"
                     /collection_date="2023-02-16"
     gene            complement(459..653)
                     /locus_tag="WHT88_RS24770"
                     /old_locus_tag="WHT88_24735"
     CDS             complement(459..653)
                     /locus_tag="WHT88_RS24770"
                     /old_locus_tag="WHT88_24735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001041627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_001041633.1"
                     /translation="MNKQQQTALNMARFIKSQSLTLLEKLDALDADEQAAMCERLHELA
                     EELQNSIQVRFETESETGT"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            complement(1426..2019)
                     /locus_tag="WHT88_RS24775"
                     /old_locus_tag="WHT88_24740"
     CDS             complement(1426..2019)
                     /locus_tag="WHT88_RS24775"
                     /old_locus_tag="WHT88_24740"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_012537770.1"
                     /translation="MSGRKFGRLPNWWARSSWLVNNVRSNEIGGGIASMKCLLALSVLI
                     DFHSRTASVSFTGMERLTGLSRPMIVKGVAKLEKDGLIKIDREMFVNSYELTVQPNDDR
                     WAKVPVDTIRKKLNTISNRGMAPFVALKLYLTIISLRYQSNNTVKVTHETLRSYTGVQP
                     NQIRFGLDVLYCSRLIHLQPKEDRESNIYEIIGL"
                     /name="hypothetical protein"
     gene            complement(2613..3533)
                     /locus_tag="WHT88_RS24780"
                     /old_locus_tag="WHT88_24745"
     CDS             complement(2613..3533)
                     /locus_tag="WHT88_RS24780"
                     /old_locus_tag="WHT88_24745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000571803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Abi family protein"
                     /protein_id="WP_338913135.1"
                     /translation="MDMPNTIHYPHVIPFISQGKINAIKSTFGNNLSDRECYGIYIWSQ
                     KASSAIYPLLQQLEVTLRNSIDKEATKLIGQKWWDNVYTDTSKSKHGDFIHNINKAIRR
                     YENEFKKKNPSMANTKIIAPHDDIIAHTDFYTWQAVLSDAFHTQSRSEASRALWPRLTY
                     RVLKGLDRSKDEGTARIDFLNELNEIRNYRNRLSHNDCIWIKIHSKNLQSAVETIREKI
                     NKIEGLIKTINPQVHLSLTKWGSFYHAKRICSQKEAELHLGKGIINSTTDEMNTILDQL
                     YALTADGKLTGVVKRNTNNIAFHKF"
                     /name="Abi family protein"
     gene            complement(3753..3866)
                     /locus_tag="WHT88_RS24785"
                     /old_locus_tag="WHT88_24750"
     CDS             complement(3753..3866)
                     /locus_tag="WHT88_RS24785"
                     /old_locus_tag="WHT88_24750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_071531573.1"
                     /translation="MHEPPVQPDRCALSGNYRLESNPVRHALTPLAAATGN"
                     /name="replication initiation protein"
     Typing          292..378
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.43e-38"
     Typing          690..788
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="98.0"
                     /coverage="100.0"
                     /evalue="1.35e-41"
     Typing          913..1168
                     /name="MOBF"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="93.411"
                     /coverage="89.0"
                     /evalue="2.67e-103"
     Typing          complement(2..281)
                     /name="rep_cluster_2350"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="92.226"
                     /coverage="100.0"
                     /evalue="1.93e-107"
     Typing          complement(3717..4073)
                     /name="rep_cluster_2370"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="93.855"
                     /coverage="100.0"
                     /evalue="6.72e-151"
ORIGIN
        1 gcgtcggttt ttgtgatgct cgtcaggggg gcggagccta tggaaaaacg ccagcggcgc
       61 ggcctttttt cctggctttg ccttgttgct cacatgttct ttccggtctt atcccctgat
      121 tctgtggata actgtgttac cgtttttgtg tgagtcagta ccgctcgccg cagccgaacg
      181 accgagcgta gcgagtcagt gagcgaggaa gcggaaaagc gcccggacgt gcattttctc
      241 cttacgcatc tgtgcggcat ttcacacccg gcatggggca cttttcatac aatccgcact
      301 gatgccgcat ggttaagcca gtatacactc cgctatcgct acgtgactgg gtcatggctg
      361 cgccccgaca cccgctaaaa ccccctgacg cgccctgacg ggcttgtctg ctgccgaaaa
      421 cgctcgcgga caagccgtga gcgcctccgt cagcttcgtt atgttcctgt ttcactttcg
      481 gtctcaaagc gaacctggat gctgttctgg agttcttccg cgagttcgtg cagtcgttcg
      541 cacatggctg cctgttcgtc ggcatccaga gcatccagtt tttcaagcag tgtcaggctc
      601 tggcttttga taaatcgcgc catattcagc gcagtttgtt gttgtttgtt caccttccgt
      661 tgttctccgt cagttccggg tgtcgggggg accctgagca gctggtaatt gtaagacgtt
      721 gcgggcgacg gtattacaat tgcacatcct gtcctgtttt tttaggacgt atcatggcac
      781 agcatatcaa ctgataaata atccctgtgc agtgcagccg ctgttgcata aaatttcgct
      841 ctgcgtcgag tgtttcttaa tcaataattc cgctgatact ccggaaaaac gcgagtctgt
      901 tctcattcct gaaatgccca caccccacgc aaaaacaagt ttttgctgat ttttctttat
      961 aaatagagag ttatgaaaaa ttagtttctc ttgctctctt tgcgatattt aaaaaagcgg
     1021 tgccggcgca gctacaacac cgcgccgaca ccgctttgta ggggtggtac tgactatttt
     1081 tataaaaaac atcattttat atcaggggtg ctgctagcgg cgcggtgtgt ttttttacag
     1141 gacgcccctg ggggcgctgc caggggtgtc tgttcagata tgtagcaatg agtcagggat
     1201 tcacgaactg aaaatgtccg aaaatgtgtc tcatgggcac cgtatgcgcc caaaccgttc
     1261 gtcattcatt ttcatgcata gctatgcagt gggctgaaaa cgatcctgac gcattttttc
     1321 ggttttcact gggtaaaaca tctctttttg cggtatctgc gtcagaatcg cgttcagtgc
     1381 gttttagcgg tgcgcgtaat gcgacgttat ggtaaatgca tttcctcata ggccgattat
     1441 ttcatagatg tttgactctc tatcttcttt tggttgcaga tgtatcaggc gactacagta
     1501 cagtacatct aagccgaacc taatctggtt tggctggaca cctgtatagc ttctcagtgt
     1561 ttcatgtgtc accttaacag tattatttga ctgataacga aggcttataa ttgttaaata
     1621 tagttttaat gccacaaatg gggccatccc cctgttcgat atggtgttta gttttttcct
     1681 gatagtatct actggtactt ttgcccacct atcatcattt ggctgtactg ttaattcata
     1741 ggagttaaca aacatctctc tatctatctt tataagacca tctttctcaa gtttggctac
     1801 tcctttcact atcatggggc ggcttagtcc agtcagtctt tccattccgg taaatgatac
     1861 tgaggctgtt cttgaatgga aatcaatcaa gacggataga gctaacaagc atttcattga
     1921 tgcaatgccg ccccctatct catttgaacg aacattgttt acaagccatg agcttcgggc
     1981 ccaccagttt ggaagcctgc caaattttct accgctcatt tttaccccat tttcggtcaa
     2041 ggagagatat aaatagcttt attatcatat acatgaaaac cattgcacct aaagatacaa
     2101 cagaaaccaa aacctccggc tttgcggaag ttagcgttac cagcaaattg ttgagggttt
     2161 ccaattggtc ctccagtcgc atactaagtt gttgtgtttt aactttatat acgcttatta
     2221 gaataaatct agataaagca atatttggtg gtttcttgtt ttcccatata aaacatgatg
     2281 ttatcttgtt tttatcgttt tttaactggt aaatgtaaat ttgataatgc tggtttaatc
     2341 ggcgttttta gttatttttg ttgtgtgttt tttgatctat tggtaaatgg tggatggtaa
     2401 gctttggcgt gatcatggga aatagtttgc tctttttcct gatgatgatg tatcatgtat
     2461 ggcagtgaag ccttgagctt tcgctttaat gcattgtgaa atttttatag attcacaatg
     2521 acattaaggc cacgctccac cgaaaggtga taatggcaag agatttggat gaggctcgac
     2581 aggaaactgt cgggcctttt ctattttgtg atctaaaact tgtgaaatgc gatattgttg
     2641 gtatttcgtt ttacaacacc cgttagcttt ccgtcagcag ttagtgcgta tagttgatct
     2701 agaattgtgt tcatctcatc tgttgtgcta ttgattattc ctttgcctag atgcaattcg
     2761 gcctcttttt gagaacatat tcttttggcg tgataaaagg aaccccactt cgttaatgat
     2821 aggtgtacct gtgggtttat cgtttttatc agtccttcta ttttgtttat tttttctctt
     2881 attgtttcta ctgcagattg caaattttta gagtgtattt ttatccatat gcaatcatta
     2941 tgcgataacc tatttctgta gtttctgatc tcattcagct cgtttaagaa atcaattctg
     3001 gctgtgcctt catctttgct tctatctaat cccttcagta ctctgtaggt gagcctgggc
     3061 cataaggctc ttgatgcttc agatcttgat tgtgtatgaa aagcatcgct caaaaccgct
     3121 tgccatgtgt aaaaatctgt gtgtgcaatg atgtcatcat gaggtgcaat tattttggta
     3181 tttgccattg atgggttttt tttcttgaat tcattctcat atcttcttat tgctttgttt
     3241 atattatgta tgaagtcacc gtgtttgctt tttgatgtgt cggtgtatac attatcccac
     3301 catttttggc ctattagttt tgtcgcttct ttatcaatcg agtttctcaa agtaacttcg
     3361 agttgttgca gtaatggata tatggcagat gaggctttct ggctccatat atatatcccg
     3421 tagcactccc tatcagacag gttattacca aacgtgcttt ttatagcatt tatttttcct
     3481 tgggatataa atggtattac atgagggtaa tgaattgtat ttggcatatc catctctatc
     3541 atacacttag tggtgattgg atgttgccat acacgtatgg atagttgtag agtgttaaac
     3601 gaaaaaaccg ccttggcggg cggtttttcg aaggttcaaa gagttggcgc tctgtgaacc
     3661 aaggtaactg gcttggagga gcgcagtcac caaaatctgt tctttcagtt tagccttaac
     3721 aggtgcataa cttcaagaca aactcctcta aatcagttac cagtggctgc tgccagtggc
     3781 gttaaggcgt gccttaccgg gttggactca agacgatagt taccggataa ggcgcagcgg
     3841 tcgggctgaa cggggggttc gtgcacacag cccagcttgg agcgaacgac ctacaccgaa
     3901 ctgagatacc aacagcgtga gctatgagaa agcgccacgc ttcccgaagg gagaaaggcg
     3961 gacaggtatc cggtaagcgg cagggtcgga acaggagagc gcacgaggga gcttccaggg
     4021 ggaaacgcct ggtatcttta tagtcctgtc gggtttcgcc acctctgact tga
//
