LOCUS       NZ_CP148273             4615 bp    DNA     circular CON 05-APR-2024
DEFINITION  Escherichia coli strain Z1323PEC0013 plasmid pZ1323PEC0013-5,
            complete sequence.
ACCESSION   NZ_CP148273
VERSION     NZ_CP148273.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40441620
            Assembly: GCF_037526635.1
KEYWORDS    RefSeq.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 4615)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Complete genome sequence of Escherichia coli isolated from humans,
            companion animals, industrial animals and wild animals
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4615)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-MAR-2024) Division of biotechnology, Jeonbuk National
            University, kobongro, Iksan 54596, South Korea
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.4.9
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 111X
            Sequencing Technology :: Illumina NovaSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037526635.1-RS_2024_04_05
            Annotation Date                   :: 04/05/2024 20:12:17
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,957
            CDSs (total)                      :: 4,840
            Genes (coding)                    :: 4,495
            CDSs (with protein)               :: 4,495
            Genes (RNA)                       :: 117
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 345
            CDSs (without protein)            :: 345
            Pseudo Genes (ambiguous residues) :: 0 of 345
            Pseudo Genes (frameshifted)       :: 117 of 345
            Pseudo Genes (incomplete)         :: 253 of 345
            Pseudo Genes (internal stop)      :: 48 of 345
            Pseudo Genes (multiple problems)  :: 65 of 345
            Pseudo Genes (short protein)      :: 4 of 345
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP148273.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4615
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /strain="Z1323PEC0013"
                     /host="Dog"
                     /db_xref="taxon:562"
                     /plasmid="pZ1323PEC0013-5"
                     /geo_loc_name="South Korea"
                     /collection_date="2023-02-16"
     gene            86..472
                     /locus_tag="WHT88_RS24750"
                     /old_locus_tag="WHT88_24715"
     CDS             86..472
                     /locus_tag="WHT88_RS24750"
                     /old_locus_tag="WHT88_24715"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001598756.1"
                     /translation="MRAFNYSPRYANAVRVLNRLLDKEFLSAEEIRLYDDQGRVIEYIN
                     NRLLVPVLSMKISRDGEYVRVWYLSQEAIDDYYNRREYQFSQQRHAVAVARQHRKASTA
                     ARLLLSLGETVPESIRMILAANDD"
                     /name="hypothetical protein"
     gene            832..1014
                     /locus_tag="WHT88_RS24755"
                     /old_locus_tag="WHT88_24720"
     CDS             832..1014
                     /locus_tag="WHT88_RS24755"
                     /old_locus_tag="WHT88_24720"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_174785313.1"
                     /translation="MSKELSLNRISNRVSSSLKEGIVHERVVHGNVYDLELELLRRKRE
                     EAIKRIIEDSKSLKW"
                     /name="hypothetical protein"
     gene            1069..2652
                     /locus_tag="WHT88_RS24760"
                     /old_locus_tag="WHT88_24725"
     CDS             1069..2652
                     /locus_tag="WHT88_RS24760"
                     /old_locus_tag="WHT88_24725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000951932.1"
                     /GO_function="GO:0019239 - deaminase activity [Evidence
                     IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anti-phage dCTP deaminase"
                     /protein_id="WP_223351761.1"
                     /translation="MSSANEDISGRDSIDQITSRQSMDIIIGFCGAVGSGIKSIVDVTE
                     EELEDLGYEVYRIRVSDLMQKLFSEWCGDTSTPFKRYNSLQDFGDSLRCKYYPHILAEA
                     VIHEIKIEKNLEGKSKELKKRAFLIDQLKHQDEIELLRMVYQHNFYLLGVIRSETERKR
                     NLRDEGLSKSEVDIIIHHDRKSEHPYGQQTAKAILDADYFVKNNQGQRAHLKSKVKRFL
                     GLIHGLNGLTPNAHEKGMYAAHSASLQSACLSRQVGAAILDIKGNLIAVGRNDVPKFNG
                     GLYSADDGVNDHRCVYKGGKCYNEVRKLKIKDKIQQILLSDKVKELSVQLTQEQAEKVA
                     GIIYEGTPVSSIIEYSRSIHAEMDAITSLARLGNGGFEDKVLYTTTFPCHNCARHIVAV
                     GINKVVYIEPYEKSLALELHDDAITEVNESGKVLFESFEGVSPRRYHKFFFSTDERKDS
                     KGNAEKYSTKYKNHIDIQFIDSYVDFENRVADIFISNTKTDAEAQVAVPSGTPVNPLLP
                     PIPPTPPTSV"
                     /name="anti-phage dCTP deaminase"
     gene            complement(2857..2970)
                     /locus_tag="WHT88_RS24765"
                     /old_locus_tag="WHT88_24730"
     CDS             complement(2857..2970)
                     /locus_tag="WHT88_RS24765"
                     /old_locus_tag="WHT88_24730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001354639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_071594735.1"
                     /translation="MHEPPVQSDRCACPGNYRLESNPRRHDKAPLAAATGN"
                     /name="replication initiation protein"
     Typing          complement(2854..3243)
                     /name="rep_cluster_2373"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="96.164"
                     /coverage="91.0"
                     /evalue="0.0"
ORIGIN
        1 attttgtgct gtgcaggcat taccattctt tctatgcaca aacgtgccgc gtcttgcatt
       61 ctgcttttgt atgcggaggt gctcaatgag agcttttaac tactcccctc gttatgctaa
      121 cgccgttcgt gttttaaacc gccttctcga taaagagttt ctgagtgctg aagaaattcg
      181 cctttacgat gatcaagggc gggtgattga gtacatcaac aacaggcttc ttgttcctgt
      241 tttgagcatg aagatcagcc gcgatggtga gtatgttcgt gtctggtatt tgtctcaaga
      301 agccattgat gactattaca accgtcgtga gtatcagttt agtcagcaga ggcatgctgt
      361 cgctgttgct cgtcagcata gaaaagcctc tacggccgct cgtttgcttt tatcgctagg
      421 tgaaactgtc ccagaaagta tccgtatgat tcttgctgct aatgatgatt aggaggatat
      481 tatgtttctg gggttatttg ttgtttttgc tggctttctc tacctattag agagcttggg
      541 gtttcttcct ggaaacgttg aatggggagt gcctctcgcc atgatttgtt ttgggcttca
      601 tctggtctat gaagcagtca gggagagagt gcttaagcac gatgtttagg tcttaaacta
      661 gactaaaaag ctcgcaatat gcgagctttt ttatttattt catagacttg tgtagttttc
      721 actctttttt gcctggtgtt ctaagcaaaa aaaacttctg cgcattacgc ctgtttgtgg
      781 ttgcctgtta taaagataac agtaaaatcc atgcgtttcg caggagaaaa tatgagcaaa
      841 gagctatcac taaatcgtat ttccaataga gtttcgtcct ctttgaaaga ggggatagtt
      901 catgaaagag tggttcatgg aaatgtttat gatttggagt tggagttatt aaggcgcaaa
      961 agagaagaag ctataaaaag gataattgaa gattctaaat cattaaaatg gtgattgaga
     1021 ggcgttatga gcacagctag gaagttaaag gaaaaaaaga gcactccaat gagtagtgcc
     1081 aatgaagata tttctggtcg tgatagtata gatcagatta catctaggca atccatggat
     1141 attattatag gtttctgtgg ggctgttggt tccggtatta agtcaattgt agatgtaacc
     1201 gaagaagaac tggaagattt aggatacgaa gtatatagga taagagttag cgatcttatg
     1261 cagaaacttt tttctgagtg gtgtggggat acatctactc cattcaaaag atataattcc
     1321 ttgcaggatt ttggtgattc cttaagatgt aagtactacc cacacatact agctgaagct
     1381 gtaattcatg aaataaagat agaaaaaaat ctagaaggaa aatcaaaaga gttaaagaaa
     1441 cgagctttcc ttatagatca actaaagcac caagatgaaa ttgagttgct tagaatggtc
     1501 tatcaacata atttctattt attaggtgtt attaggagcg agactgaaag aaaaagaaat
     1561 cttcgagatg agggtttaag caaatctgaa gttgatataa tcatccatca tgacaggaag
     1621 tctgagcacc cttatggcca gcaaacagca aaagctatac ttgatgctga ctattttgtt
     1681 aaaaataatc aaggccagag agctcacctt aaatctaaag ttaaacgctt tcttggtcta
     1741 attcatgggc ttaatggcct tacgccaaac gcgcatgaga agggcatgta cgcagctcat
     1801 tctgcctctt tacaatctgc atgtctttcc agacaggtag gtgctgctat tttagatata
     1861 aaaggaaatt taattgccgt tgggcgcaat gatgttccta aatttaacgg tggcctttat
     1921 agtgctgatg atggagtgaa tgatcatcgc tgtgtctaca aaggtggcaa atgttacaat
     1981 gaagtaagaa aattaaaaat aaaagataaa atacagcaaa tattgctttc tgataaggtt
     2041 aaggagttgt ctgttcagtt aactcaagaa caagcagaaa aggttgctgg aataatctac
     2101 gaaggtactc ctgtatcatc aatcattgag tactctcgct ctattcatgc tgaaatggat
     2161 gctattacat ctcttgctag actcgggaat ggtggttttg aagataaggt tttatataca
     2221 actacgttcc cctgtcataa ttgtgcgaga catattgttg ctgttggtat caataaagtt
     2281 gtttacattg aaccttatga aaaaagctta gctttagagt tgcacgatga tgcaataact
     2341 gaagttaacg aaagtggtaa ggttttattt gagtcctttg aaggggtttc accaaggaga
     2401 tatcataagt tcttcttttc tacagatgaa aggaaggata gtaaaggtaa tgcggagaaa
     2461 tattcaacga agtataagaa tcatattgat atacagttta ttgatagtta tgtggatttt
     2521 gaaaatcgtg tggcggatat tttcattagt aacacaaaaa cagatgctga agctcaagta
     2581 gccgttccat ctgggacgcc agttaatccg cttctgccac cgattcctcc gacgccacca
     2641 acatcggtat gaagatctat tgactctgat gttacacaga gcttaatctt gtcttgcaaa
     2701 agaaaaaacc accgctacca acggtggttt ttcaaggttc tctgagctac caactctttg
     2761 aaccgaggta actggcttgg aggagctcag tcaccaaaac ttgttctttc agtttagcct
     2821 taacaggcgc acaacttcaa gactaactcc tctaaatcag ttaccagtgg ctgctgccag
     2881 tggcgctttg tcgtgccttc tcgggttgga ctcaagacga tagttaccgg ggcaggcgca
     2941 gcggtcggac tgaacggggg gttcgtgcat acagtccagc ttggagcgaa ctgcctaccc
     3001 ggaactgagt gtcaggcgtg gaatgagaca aacgcggcca taacagcgga atgacaccgg
     3061 taaaccgaaa ggcaggaaca ggagagcgca cgagggagct accaggggga aacgcctggg
     3121 atctttatag tcctgtcggg tttcgccacc actgatttga gcgtcagatt ctgtgatgct
     3181 tgtcaggggg gcggagccta tggaaaaccg gcaacgccgc ggcctttctt gttgcttctc
     3241 cattctctct cattgcctat ggcttaatgt ctctgttccc tccgctcgcc gcagccgaac
     3301 gaccgagcgg agcgagtcag tgagcgagga agcggaatat ctgcgggctt ctctttggca
     3361 ccgtacgcgc catagctgca ttttttaata cgatgcagga tagggcgaac gccgcaaagt
     3421 gacgtcacct gacgttcctg gattacaaag gttaaagcag cggacaggaa atgttttgtg
     3481 cccacagcta tgctggctta ttcacaaaac agcgggacaa gatgtgtttt tggagtaccg
     3541 ccggcccgct aaagactcct ggttagctcc cgcatgtttg ctaccatttt gctacttttt
     3601 tgctatctcc agagtcttct ggtctttcgg ttgctatcct tttgctactt ttttgctatc
     3661 aaaatgctac ctctcccttc ttgcaataaa tgaccaaggc acgttagcga tgtatacatc
     3721 gccgcgccgc aagggtgccc cttccgaatc ccgttcatca ctgtgtgctg attaatccag
     3781 gttaaatccg acccccttag caataaatcc tgccatgcct gacggcctgg ccaacgcctc
     3841 acggtcgcac agtaaactgc gcaccctttc accgttatcg gtggggttcg tggtggcttt
     3901 cagggcgctc gccggatttt agccgctaaa atgacgtcca tgcgttcgtg tgcatagcca
     3961 tgcagacgcg aagaaatcat caggcgcgtt ttttcacgat atggacaggg aaagatgccg
     4021 gaaataggca ggaggacgca gaaatgccct gagggagtct gagatggtgc gggcaacgga
     4081 tgttatggta aatagcttcc gttggtaagt atgccaatgc aagtttttca gggtttgaga
     4141 ctcgtttaga acatctaaaa aaaagcacat gaatgctgct ataagaagcg actgtttgat
     4201 ggttcatggt ttaccattaa ggtagatgaa aactcaatac agcgctattt agggcgctta
     4261 aatggcattc ttgtattttt ttaacgatgc agagtaacag gctctagcta ggttatggta
     4321 cactcgaaaa gttcccttat agggacaaaa caaaagggac tttgaagcta cgcaaccgcc
     4381 aagaagctcg cttcaaagtc cctgtaccgc agctatattg catgggtttg gttaagacat
     4441 acgtcatgtc tttgggggca tattatggtg aaaaacgcgt tcgcgtctac accaatattt
     4501 atacatttct cttcaatatt gacgccgttt ccagccaact tttgctatat gggtgacaat
     4561 tttcgctttt aaaacggaga tgtctccatg attgagcatg atcctaaaaa tctgc
//
