LOCUS       NZ_CP148046             1860 bp    DNA     circular CON 05-APR-2024
DEFINITION  Morganella morganii strain DZ1 plasmid pDZc, complete sequence.
ACCESSION   NZ_CP148046
VERSION     NZ_CP148046.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40447594
            Assembly: GCF_037482145.1
KEYWORDS    RefSeq.
SOURCE      Morganella morganii (Proteus morganii)
  ORGANISM  Morganella morganii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Morganellaceae; Morganella.
REFERENCE   1  (bases 1 to 1860)
  AUTHORS   Cao,G.
  TITLE     Complete genome of Morganella morganii DZ1
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1860)
  AUTHORS   Cao,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-MAR-2024) College of Biomedical Sciences, Shandong
            First Medical University, 6699 QINGDAO ROAD, Jinan 250117, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Canu v. 02-2024
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 854.0x
            Sequencing Technology             :: Oxford Nanopore; BGI
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037482145.1-RS_2024_04_05
            Annotation Date                   :: 04/05/2024 19:22:05
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,059
            CDSs (total)                      :: 3,952
            Genes (coding)                    :: 3,897
            CDSs (with protein)               :: 3,897
            Genes (RNA)                       :: 107
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 81
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 55
            CDSs (without protein)            :: 55
            Pseudo Genes (ambiguous residues) :: 0 of 55
            Pseudo Genes (frameshifted)       :: 18 of 55
            Pseudo Genes (incomplete)         :: 45 of 55
            Pseudo Genes (internal stop)      :: 10 of 55
            Pseudo Genes (multiple problems)  :: 15 of 55
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP148046.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1860
                     /organism="Morganella morganii"
                     /mol_type="genomic DNA"
                     /strain="DZ1"
                     /isolation_source="water"
                     /db_xref="taxon:582"
                     /plasmid="pDZc"
                     /geo_loc_name="China:Jinan"
                     /collection_date="2023-09-07"
     gene            join(1168..1860,1..12)
                     /locus_tag="WEU31_RS20290"
                     /old_locus_tag="WEU31_20290"
     CDS             join(1168..1860,1..12)
                     /locus_tag="WEU31_RS20290"
                     /old_locus_tag="WEU31_20290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005221000.1"
                     /GO_function="GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /GO_process="GO:0006313 - DNA transposition [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS6-like element IS26 family transposase"
                     /protein_id="WP_338857773.1"
                     /translation="MNPFKGRHFQRDIILWAVRWYCKYGISYRELQEMLAERGVNVDHS
                     TIYRWVQRYAPEMEKRLRWYWRSPSDLCPWHMDETYVKVNGRWAYLYRAVDSRGRTVDF
                     YLSSRRNSKAAYRFLGKILNNVKKWQIPRFINTDKAPAYGRALALLKREGRCPSDVEHR
                     QIKYRNNVIECDHGKLKRIINATLGFKSMKTAYATIKGIEVMRALRKGQASAFYYGDPL
                     GEMRLVSRVFEM"
                     /name="IS6-like element IS26 family transposase"
     gene            complement(202..1017)
                     /locus_tag="WEU31_RS20295"
                     /old_locus_tag="WEU31_20295"
     CDS             complement(202..1017)
                     /locus_tag="WEU31_RS20295"
                     /old_locus_tag="WEU31_20295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032492145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside O-phosphotransferase APH(3')-Ia"
                     /protein_id="WP_000018329.1"
                     /translation="MSHIQRETSCSRPRLNSNMDADLYGYKWARDNVGQSGATIYRLYG
                     KPDAPELFLKHGKGSVANDVTDEMVRLNWLTEFMPLPTIKHFIRTPDDAWLLTTAIPGK
                     TAFQVLEEYPDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDA
                     SDFDDERNGWPVEQVWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGI
                     ADRYQDLAILWNCLGEFSPSLQKRLFQKYGIDNPDMNKLQFHLMLDEFF"
                     /name="aminoglycoside O-phosphotransferase APH(3')-Ia"
     ARG             complement(206..1017)
                     /name="aph(3')-Ia"
                     /gene="aph(3')-Ia"
                     /gene_name="aminoglycoside O-phosphotransferase APH(3')-Ia"
                     /tool="amrfinderplus"
                     /drug_class="AMINOGLYCOSIDE"
                     /identity="100.0"
                     /coverage="100.0"
ORIGIN
        1 tttgaaatgt aaggcctttg aataagacaa aaggctgcct catcgctaac tttgcaacag
       61 tgccaattta tgagtaaagg attatgtcca cgataagcac ctgggtcgat tcctgggagg
      121 cggccatgag ggtagggaag cgccgtcccg tcaagtcagc gtaatgctct gccagtgtta
      181 caaccaatta accaattctg attagaaaaa ctcatcgagc atcaaatgaa actgcaattt
      241 attcatatca ggattatcaa taccatattt ttgaaaaagc cgtttctgta atgaaggaga
      301 aaactcaccg aggcagttcc ataggatggc aagatcctgg tatcggtctg cgattccgac
      361 tcgtccaaca tcaatacaac ctattaattt cccctcgtca aaaataaggt tatcaagtga
      421 gaaatcacca tgagtgacga ctgaatccgg tgagaatggc aaaagcttat gcatttcttt
      481 ccagacttgt tcaacaggcc agccattacg ctcgtcatca aaatcactcg catcaaccaa
      541 accgttattc attcgtgatt gcgcctgagc gagacgaaat acgcgatcgc tgttaaaagg
      601 acaattacaa acaggaatcg aatgcaaccg gcgcaggaac actgccagcg catcaacaat
      661 attttcacct gaatcaggat attcttctaa tacctggaat gctgttttcc cggggatcgc
      721 agtggtgagt aaccatgcat catcaggagt acggataaaa tgcttgatgg tcggaagagg
      781 cataaattcc gtcagccagt ttagtctgac catctcatct gtaacatcat tggcaacgct
      841 acctttgcca tgtttcagaa acaactctgg cgcatcgggc ttcccataca atcgatagat
      901 tgtcgcacct gattgcccga cattatcgcg agcccattta tacccatata aatcagcatc
      961 catgttggaa tttaatcgcg gcctcgagca agacgtttcc cgttgaatat ggctcataac
     1021 accccttgta ttactgttta tgtaagcaga cagttttatt gttcatgatg atatattttt
     1081 atcttgtgca atgtaacatc agagggcact gttgcaaata gtcggtggtg ataaacttat
     1141 catccccttt tgctgatgga gctgcacatg aacccattca aaggccggca ttttcagcgt
     1201 gacatcattc tgtgggccgt acgctggtac tgcaaatacg gcatcagtta ccgtgagctg
     1261 caggagatgc tggctgaacg cggagtgaat gtcgatcact ccacgattta ccgctgggtt
     1321 cagcgttatg cgcctgaaat ggaaaaacgg ctgcgctggt actggcgtag cccttccgat
     1381 ctttgcccgt ggcacatgga tgaaacctac gtgaaggtca atggccgctg ggcgtatctg
     1441 taccgggccg tcgacagccg gggccgcact gtcgattttt atctctcctc ccgtcgtaac
     1501 agcaaagctg cataccggtt tctgggtaaa atcctcaaca acgtgaagaa gtggcagatc
     1561 ccgcgattca tcaacacgga taaagcgccc gcctatggtc gcgcgcttgc tctgctcaaa
     1621 cgcgaaggcc ggtgcccgtc tgacgttgaa caccgacaga ttaagtaccg gaacaacgtg
     1681 attgaatgcg atcatggcaa actgaaacgg ataatcaacg ccacgctggg atttaaatcc
     1741 atgaagacgg cttacgccac catcaaaggt attgaggtga tgcgtgcact acgcaaaggc
     1801 caggcctcag cattttatta tggtgatccc ctgggcgaaa tgcgcctggt aagcagagtt
//
