LOCUS       NZ_CP148045             2683 bp    DNA     circular CON 05-APR-2024
DEFINITION  Morganella morganii strain DZ1 plasmid pDZb, complete sequence.
ACCESSION   NZ_CP148045
VERSION     NZ_CP148045.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40447594
            Assembly: GCF_037482145.1
KEYWORDS    RefSeq.
SOURCE      Morganella morganii (Proteus morganii)
  ORGANISM  Morganella morganii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Morganellaceae; Morganella.
REFERENCE   1  (bases 1 to 2683)
  AUTHORS   Cao,G.
  TITLE     Complete genome of Morganella morganii DZ1
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2683)
  AUTHORS   Cao,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-MAR-2024) College of Biomedical Sciences, Shandong
            First Medical University, 6699 QINGDAO ROAD, Jinan 250117, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Canu v. 02-2024
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 854.0x
            Sequencing Technology             :: Oxford Nanopore; BGI
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037482145.1-RS_2024_04_05
            Annotation Date                   :: 04/05/2024 19:22:05
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,059
            CDSs (total)                      :: 3,952
            Genes (coding)                    :: 3,897
            CDSs (with protein)               :: 3,897
            Genes (RNA)                       :: 107
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 81
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 55
            CDSs (without protein)            :: 55
            Pseudo Genes (ambiguous residues) :: 0 of 55
            Pseudo Genes (frameshifted)       :: 18 of 55
            Pseudo Genes (incomplete)         :: 45 of 55
            Pseudo Genes (internal stop)      :: 10 of 55
            Pseudo Genes (multiple problems)  :: 15 of 55
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP148045.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2683
                     /organism="Morganella morganii"
                     /mol_type="genomic DNA"
                     /strain="DZ1"
                     /isolation_source="water"
                     /db_xref="taxon:582"
                     /plasmid="pDZb"
                     /geo_loc_name="China:Jinan"
                     /collection_date="2023-09-07"
     gene            136..576
                     /locus_tag="WEU31_RS20280"
                     /old_locus_tag="WEU31_20280"
     CDS             136..576
                     /locus_tag="WEU31_RS20280"
                     /old_locus_tag="WEU31_20280"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_015063446.1"
                     /translation="MSQLFRLASPEDYEYIEELNLWELSFDKRPVQGVRCEDPVIGAEK
                     YNQGREKFKALASRHKKHWKPNGLTFSELIRWAIECGTPEQCQLVLALYHCTNDDDYQA
                     MGIQLSRSIDNANVSPIIFFTGKNQRLLGDISMLKQLEEKVR"
                     /name="hypothetical protein"
     gene            1537..2181
                     /locus_tag="WEU31_RS20285"
                     /old_locus_tag="WEU31_20285"
     CDS             1537..2181
                     /locus_tag="WEU31_RS20285"
                     /old_locus_tag="WEU31_20285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032495680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinolone resistance pentapeptide repeat protein
                     QnrD1"
                     /protein_id="WP_012634451.1"
                     /translation="MEKHFINEKFSRDQFTGNRVKNIAFSNCDFSGVDLTDTEFVDCSF
                     YDRNSLEGCDFNRAKLKNASFKSCDLSMSNFKNISALGLEISECLAQGADFRGANFMNM
                     ITTRSWFCSAYITKTNLSYANFSRVILEKCELWENRWNGTVITGAVFRGSDLSCGEFSS
                     FDWSLADFTGCDLTGGALGELDARRINLDGVKLDGEQALQLVESLGVIVHR"
                     /name="quinolone resistance pentapeptide repeat protein
                     QnrD1"
     ARG             1538..2178
                     /name="qnrD1"
                     /gene="qnrD1"
                     /gene_name="quinolone resistance pentapeptide repeat
                     protein QnrD1"
                     /tool="amrfinderplus"
                     /drug_class="QUINOLONE"
                     /identity="100.0"
                     /coverage="100.0"
     Typing          1288..1443
                     /name="Col3M"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.089"
                     /coverage="100.0"
                     /evalue="2.29e-71"
ORIGIN
        1 tctggagctt ggtaaacctc ataaattcaa ttcgcaacgc tcgccgcaag gcgtgaactt
       61 gtttcacgtc gaggaagcgg aatttctcga aagccttata ctgtctccgt tcacacatga
      121 tcggagggtg tctctatgtc tcaattattt cgtttggcat cgccagaaga ttacgaatac
      181 atcgaagaat taaatttatg ggaattgtca tttgataagc gaccggttca aggggttcgt
      241 tgtgaagatc cggtgatcgg ggcagaaaaa tataatcaag ggcgtgaaaa atttaaggcg
      301 ttagcgtcac ggcataaaaa acactggaaa ccgaacggat tgaccttttc ggagttgatc
      361 cgctgggcaa tagaatgcgg aactccagaa caatgtcagc ttgttttagc gttataccat
      421 tgcacaaacg atgatgatta tcaggcgatg ggaattcagt taagccgaag tattgataat
      481 gcaaatgtca gtccgatcat ctttttcaca ggtaaaaatc aacggttatt aggtgatatt
      541 tcgatgctaa aacagctcga agaaaaggtg cgctgacgtt aggtttacct attattttat
      601 gtattatcct atctattatt ctatctctta ttttatctat ttcgtctgta ataggtagaa
      661 taatacatag aataagatac agaataatag atagacacaa gatgacgttg tgttatttct
      721 tacccattaa tccacctgtt attctaccta ttactttacc cgttattgca cccaatttag
      781 gtataacggg cagaataacg ggtgaaataa tgggtagaat catagtttta ctaacttgca
      841 ccccatgata ctttcagtat caatgccact cattttctgg acgaaaatga atgacataag
      901 gctccgccct ctggctattt tcttcggctg gacgcctgcg aaaaaaacca ttcacccaag
      961 cccgtcaaac tcactgcgtt cgtctgacca cccccttttt tcgcccctgt atttggtcgc
     1021 tcaaaaatgt ggtggtcaga cgcttcgctt gacggggggc tttgccccca aaacgaaaca
     1081 cgttcactgg ggttcacttg ccatcgctgg ggcgtgtcat ttcgtttcgg ctccccctgt
     1141 ttttcccttt cttcgctgga cgctcatcag gataaaaaca aaaagcctac cgccctcgtt
     1201 ttactcggtt ggtcaaatcg cttcttgcca caaaacaagt ttgtgacttt cagcgatttc
     1261 gcatcgtttt acttgtcagt ttgcacgatg ttaaaaacgc actcagaagc ccgcaaaacc
     1321 gttctaaact ttcagcgtag atttgggtgt tttatagggt gatcgtgtct taaaatcgtt
     1381 tcgaggggct ttaatgggga tgaacgggag gtttttgcta actaactcgc ccgtttaaca
     1441 taaaagggat tgtatgaatc aattttagct agagtttaag gttgttcaaa ttaatgtaca
     1501 atgattgcac tgtataaata accaggtgta gcatgtatgg aaaagcactt tatcaatgaa
     1561 aagttttcac gagatcaatt tacggggaat agagttaaaa atattgcctt ttcaaattgt
     1621 gatttttcag gggttgattt aactgatact gaatttgttg attgtagttt ttacgacagg
     1681 aatagcttgg aagggtgtga ttttaataga gccaaactaa aaaacgctag ctttaaaagc
     1741 tgcgatttat caatgagtaa ttttaaaaac attagcgcct taggtcttga aattagtgag
     1801 tgtttagctc aaggagctga ttttcgaggg gctaatttta tgaatatgat aactacaagg
     1861 tcatggtttt gtagtgctta tataaccaag acaaatctta gttacgctaa tttttctaga
     1921 gtcatattag aaaagtgcga actgtgggaa aatcgctgga atggcactgt gataactggc
     1981 gccgtgtttc gtggctccga tctttcttgt ggggagtttt catcgtttga ttggtctttg
     2041 gctgatttta ctggttgtga tttaacgggt ggggcgcttg gcgagcttga tgcaaggcga
     2101 attaatttag atggagtgaa gttggatgga gagcaggcgc ttcagcttgt tgagagttta
     2161 ggtgttattg ttcaccgata aaatctaggt aaaaaacgcc taatgcccca atgtggtact
     2221 aatcaaaacg gagcgaagcg acatcttcat cttgtctttg cttttctcca tgatcagtta
     2281 ttgggtcatg gtctcttagc tcgttaatct ggctaagttt ggttaggttg ggcttctttc
     2341 gacacttcgc aatccaagaa atccctagtc cgttgattgg tgctcttatc aggtacgcac
     2401 tgtaatcttt cgataccgca gcgtgattcg gaggtagagc cggaatttcg ttttccggta
     2461 cgttttacta ccacaatttg cctgtttatc ctttcggaga ccgggctaag tccgagtcaa
     2521 tcaagtggtg catttgggtt aatgtcgttg gctggtattt aatgagaacg tgacaagcgc
     2581 ctctcacgtt gctaagattg gattgcgacg tctaatctta gcaacgaatg cacaagattt
     2641 agagtaccag agccctgtga tgctgtcacg gggctttgtt aca
//
